mRNA_H-elongata_contig67796.14389.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67796.14389.1
Unique NamemRNA_H-elongata_contig67796.14389.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67796.14389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67796contigH-elongata_contig67796:1770..2956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size928
Cds size546
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67796.14389.1prot_H-elongata_contig67796.14389.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67796 2272..2956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.3118503-UTR-H-elongata_contig67796:1769..19521622931069.3118503-UTR-H-elongata_contig67796:1769..1952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67796 1770..1952 +
1691679685.066796-UTR-H-elongata_contig67796:1769..19521691679685.066796-UTR-H-elongata_contig67796:1769..1952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67796 1770..1952 +
1622931069.3342178-UTR-H-elongata_contig67796:1974..21521622931069.3342178-UTR-H-elongata_contig67796:1974..2152Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67796 1975..2152 +
1691679685.0744915-UTR-H-elongata_contig67796:1974..21521691679685.0744915-UTR-H-elongata_contig67796:1974..2152Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67796 1975..2152 +
1622931069.3497083-UTR-H-elongata_contig67796:2252..22711622931069.3497083-UTR-H-elongata_contig67796:2252..2271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67796 2253..2271 +
1691679685.08224-UTR-H-elongata_contig67796:2252..22711691679685.08224-UTR-H-elongata_contig67796:2252..2271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67796 2253..2271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.3638678-CDS-H-elongata_contig67796:2271..23041622931069.3638678-CDS-H-elongata_contig67796:2271..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67796 2272..2304 +
1691679685.0899146-CDS-H-elongata_contig67796:2271..23041691679685.0899146-CDS-H-elongata_contig67796:2271..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67796 2272..2304 +
1622931069.3804357-CDS-H-elongata_contig67796:2443..29561622931069.3804357-CDS-H-elongata_contig67796:2443..2956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67796 2444..2956 +
1691679685.0978472-CDS-H-elongata_contig67796:2443..29561691679685.0978472-CDS-H-elongata_contig67796:2443..2956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67796 2444..2956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67796.14389.1

>prot_H-elongata_contig67796.14389.1 ID=prot_H-elongata_contig67796.14389.1|Name=mRNA_H-elongata_contig67796.14389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MDAAPTLFSVNDWNLEEKANLEQNEYFARVERSTGGVAKAKQQRKERETA
ADKKESAAKAKRQQEERKAVVAKAVAEADEKEAMAKPASETAEKGAATKA
KRQRAEREAAASKAVADMAEKEAAAMAKRNRGETETAKAAAETAEKEAIA
KVKQQREERETEAAKAAAETMKRQRKEREMAA
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mRNA from alignment at H-elongata_contig67796:1770..2956+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67796.14389.1 ID=mRNA_H-elongata_contig67796.14389.1|Name=mRNA_H-elongata_contig67796.14389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1187bp|location=Sequence derived from alignment at H-elongata_contig67796:1770..2956+ (Himanthalia elongata Himel1 dioecious)
ACCAAGTACCATTCCCAGGACATCTAGGGGAAGCATGATTTCCGCGATAT
GTTTGGGATGGCCCGGCTGTACCAAGTACAACTATCACTTTATGCTGATG
GACTCCATCGATGAACTCTGCCCGGGGTGTGTCTGGGGTGGTGACTTGAC
GGCGCTCATGACAGCCCAGGCGCTAGGGATCAAAGTGAAGCAGTTGGTAC
CGACGGACAGATAAAAGGCGTCCCCTCAGAGTGAAGCAGTTGGTACCGGG
AGGCACGGTTCTAAATATGAAGACTATCGTCACTCTCAGACCTTTCTGTC
CAATGAGGGGCAGTCTGGTGCGTGCGTCGACAAGAGGCCCGAATCATCGA
ATAGGTCACCATCGCTTTGATTCCTCACTGCGCGCGTGCCGCTTCATCTG
ACGTCACCAACATCCCCGAGGTGGACAAGGACACAGGGTGTAGTCGCCTG
TCACTTCGCGGCGATCACGATATAAGATGGCAGTACCCCTCCATTCCGAG
TCATGGACGCGGCGCCTACGCTGTTCTCAGTCAATGTGAGCTAGCTTATT
CTGTCCTACTTCTTGTTCGTATGTTGTCGTGGTACAGTCAATGTACCCGA
GACATAACAAACGTATTACCTGGGAATGCGCATGCCAATGAACACGCTCG
TATCCTTACTCACCAAACGTTCAGGATTGGAACCTGGAGGAAAAGGCCAA
CCTCGAGCAAAATGAGTACTTCGCAAGGGTAGAGCGCAGTACGGGGGGGG
TGGCAAAGGCTAAGCAGCAACGCAAGGAGAGGGAGACGGCGGCAGACAAA
AAAGAATCGGCGGCAAAGGCCAAGCGGCAGCAGGAGGAGAGGAAGGCGGT
GGTGGCGAAAGCGGTCGCTGAGGCCGACGAGAAAGAAGCGATGGCGAAAC
CGGCCTCTGAGACCGCCGAGAAAGGAGCGGCGACAAAGGCCAAGCGGCAG
CGGGCGGAGAGGGAGGCAGCGGCGTCGAAAGCAGTCGCTGATATGGCCGA
AAAAGAAGCGGCGGCAATGGCTAAGCGGAATCGGGGGGAGACGGAGACGG
CGAAAGCGGCCGCCGAGACAGCCGAGAAAGAAGCGATTGCAAAGGTCAAG
CAGCAGCGGGAAGAGAGGGAGACGGAGGCGGCGAAAGCGGCCGCCGAGAC
GATGAAGCGTCAAAGGAAGGAGAGGGAGATGGCGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig67796:1770..2956+

>mRNA_H-elongata_contig67796.14389.1 ID=mRNA_H-elongata_contig67796.14389.1|Name=mRNA_H-elongata_contig67796.14389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig67796:1770..2956+ (Himanthalia elongata Himel1 dioecious)
ATGGACGCGGCGCCTACGCTGTTCTCAGTCAATATGGACGCGGCGCCTAC
GCTGTTCTCAGTCAATGATTGGAACCTGGAGGAAAAGGCCAACCTCGAGC
AAAATGAGTACTTCGCAAGGGTAGAGCGCAGTACGGGGGGGGTGGCAAAG
GCTAAGCAGCAACGCAAGGAGAGGGAGACGGCGGCAGACAAAAAAGAATC
GGCGGCAAAGGCCAAGCGGCAGCAGGAGGAGAGGAAGGCGGTGGTGGCGA
AAGCGGTCGCTGAGGCCGACGAGAAAGAAGCGATGGCGAAACCGGCCTCT
GAGACCGCCGAGAAAGGAGCGGCGACAAAGGCCAAGCGGCAGCGGGCGGA
GAGGGAGGCAGCGGCGTCGAAAGCAGTCGCTGATATGGCCGAAAAAGAAG
CGGCGGCAATGGCTAAGCGGAATCGGGGGGAGACGGAGACGGCGAAAGCG
GCCGCCGAGACAGCCGAGAAAGAAGCGATTGCAAAGGTCAAGCAGCAGCG
GGAAGAGAGGGAGACGGAGGCGGCGAAAGCGGCCGCCGAGACGATGAAGC
GTCAAAGGAAGGAGAGGGAGATGGCGGCGGATTGGAACCTGGAGGAAAAG
GCCAACCTCGAGCAAAATGAGTACTTCGCAAGGGTAGAGCGCAGTACGGG
GGGGGTGGCAAAGGCTAAGCAGCAACGCAAGGAGAGGGAGACGGCGGCAG
ACAAAAAAGAATCGGCGGCAAAGGCCAAGCGGCAGCAGGAGGAGAGGAAG
GCGGTGGTGGCGAAAGCGGTCGCTGAGGCCGACGAGAAAGAAGCGATGGC
GAAACCGGCCTCTGAGACCGCCGAGAAAGGAGCGGCGACAAAGGCCAAGC
GGCAGCGGGCGGAGAGGGAGGCAGCGGCGTCGAAAGCAGTCGCTGATATG
GCCGAAAAAGAAGCGGCGGCAATGGCTAAGCGGAATCGGGGGGAGACGGA
GACGGCGAAAGCGGCCGCCGAGACAGCCGAGAAAGAAGCGATTGCAAAGG
TCAAGCAGCAGCGGGAAGAGAGGGAGACGGAGGCGGCGAAAGCGGCCGCC
GAGACGATGAAGCGTCAAAGGAAGGAGAGGGAGATGGCGGCG
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