mRNA_H-elongata_contig67795.14388.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 117 bits (293), Expect = 3.070e-27 Identity = 74/184 (40.22%), Postives = 104/184 (56.52%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++TA+ AR DL T+NVRT++ G N GH ++ A +C++I +QETRR G+ I YVI SG G K G+ GVG+ +++++ ++G G E IS RL+KVR+ TF+VG APTETA K F L + I EV + DHL+++MDANARTG
Sbjct: 77 VKATAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDG--YVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTG 258
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 116 bits (290), Expect = 5.780e-27 Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+NVRT++ G N GH ++ + C++I +QETRR G+ +I YVI SG G K G+ GVG+ +++++ ++G +G E IS RL+KVR+ TF+VG APTET T K F L + I EV + DHL+++MDANARTG
Sbjct: 162 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDG--YVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 343
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 115 bits (289), Expect = 8.860e-27 Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+NVRT++ G N GH ++ + C++I +QETRR G+ +I YVI SG G K G+ GVG+ +++++ ++G +G E IS RL+KVR+ TF+VG APTET T K F L + I EV + DHL+++MDANARTG
Sbjct: 73 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDG--YVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 254
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.740e-26 Identity = 70/184 (38.04%), Postives = 103/184 (55.98%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+N+RT+ N GH ++ + C+++ +QE RRDG+ +I P YVI SG G K G+ GVG+ +++++ ++G +G E IS RL+KVR+ TF+VG APTET T K F L + I EV + DHL+++MDANARTG
Sbjct: 12 VKAAAKKKAREGDLSFGTFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSI--PHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTG 193
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.830e-26 Identity = 70/184 (38.04%), Postives = 103/184 (55.98%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+NVRT++ G N GH ++ + C++I +QETRR+G+ +I YVI SG G K G+ GVG+ +++++ ++G +G E I RL+KVR+ TF+V APTET T K F L + I EV + DHL+++MDANARTG
Sbjct: 135 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDG--YVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTG 316
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 114 bits (284), Expect = 4.980e-26 Identity = 71/184 (38.59%), Postives = 104/184 (56.52%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+NVRT++ G N GH ++ + C++I +QETRR+G+ +I YVI SG G K G+ GVG+ +++++ ++G +G E IS RL+KVR+ H +VG APTET T K F L + I EV + DHL+++MDANARTG
Sbjct: 120 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDG--YVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 301
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.600e-25 Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+NVRT++ G N GH ++ + C+++ + ETRR+G+ +I YVI SG G K G+ G+G+ +++ + ++G +G E IS RL+KVR+ TF+VG APTET T K F L + I EV + DHL+++MDANARTG
Sbjct: 24 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHDG--YVIIWSGARAGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 205
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 111 bits (277), Expect = 1.820e-25 Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+NVRT++ G N GH ++ + C++I +QETRR G+ +I YVI SG G K G+ GVG+ +++++ ++G +G E I RL+KVR+ F+VG APTET T K F L + I EV + DHL+++MDANARTG
Sbjct: 68 VKAAAKRKAREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDG--YVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 249
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 4.130e-25 Identity = 69/183 (37.70%), Postives = 102/183 (55.74%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANART 531
V++ A+ AR DL +NVRT++ G GH ++ + C++I +QETRR+G+ +I YVI SG G K G+ GVG+ +++++ ++G +G E IS RL+KVR+ TF+VG APTET T K F L + I EV + DHL+++MDANART
Sbjct: 46 VKAAAKKKAREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDG--YVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANART 226
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.490e-24 Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 1
Query: 4 VRSTARAAARSKDLVVATWNVRTMSERGTNGPGH-AEDLLMFAAKYECNIIAIQETRRDGRTTIQAPAADYVIHCSGHCDGDGGKPGILGVGLTVRQSIARALGPDGIVPEHISARLLKVRVIFKHKAATTFIVGCAPTETAATCH------KSRFCKELRSTIAEVPASDHLILMMDANARTG 534
V++ A+ AR DL T+NVRT++ G N GH ++ + C++I +QETRR+G+ +I YVI SG G K G+ GVG+ +++ + ++G +G E S RL+KVR+ TF+VG A TET T K F L + I EV + DHL+++MDANARTG
Sbjct: 807 VKAAAKKMAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDG--YVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 988 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67795.14388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67795.14388.1 >prot_H-elongata_contig67795.14388.1 ID=prot_H-elongata_contig67795.14388.1|Name=mRNA_H-elongata_contig67795.14388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp LVRSTARAAARSKDLVVATWNVRTMSERGTNGPGHAEDLLMFAAKYECNIback to top mRNA from alignment at H-elongata_contig67795:59..592- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67795.14388.1 ID=mRNA_H-elongata_contig67795.14388.1|Name=mRNA_H-elongata_contig67795.14388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig67795:59..592- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67795:59..592- >mRNA_H-elongata_contig67795.14388.1 ID=mRNA_H-elongata_contig67795.14388.1|Name=mRNA_H-elongata_contig67795.14388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig67795:59..592- (Himanthalia elongata Himel1 dioecious)back to top |