mRNA_H-elongata_contig67792.14387.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67792.14387.1
Unique NamemRNA_H-elongata_contig67792.14387.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67792.14387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67792contigH-elongata_contig67792:1820..2293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.2274547-CDS-H-elongata_contig67792:1819..22931622931069.2274547-CDS-H-elongata_contig67792:1819..2293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67792 1820..2293 +
1691679685.045495-CDS-H-elongata_contig67792:1819..22931691679685.045495-CDS-H-elongata_contig67792:1819..2293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67792 1820..2293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67792.14387.1prot_H-elongata_contig67792.14387.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67792 1820..2293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67792.14387.1

>prot_H-elongata_contig67792.14387.1 ID=prot_H-elongata_contig67792.14387.1|Name=mRNA_H-elongata_contig67792.14387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
QGGGGGGGAEEESGVFVFGRRGRRGASSSSTDDMMQSFGLQRQTDQEMMN
TIRTPEGGGGQSSLLAIGGGGSGGGEGGDSGDGMGLGGVGGGMDVMHAYM
RRQQRQRLEQRRQQRRQQPTERPGLDMNAILTPLSGGGDAPGVPGRADGG
NRGVGGRH
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mRNA from alignment at H-elongata_contig67792:1820..2293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67792.14387.1 ID=mRNA_H-elongata_contig67792.14387.1|Name=mRNA_H-elongata_contig67792.14387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig67792:1820..2293+ (Himanthalia elongata Himel1 dioecious)
CAGGGAGGTGGAGGGGGAGGTGGCGCTGAAGAAGAGAGTGGTGTGTTTGT
TTTCGGCAGAAGAGGCAGAAGAGGTGCCAGCAGCAGCAGCACGGATGACA
TGATGCAGTCCTTCGGGTTACAGCGACAGACGGACCAGGAAATGATGAAC
ACAATCCGGACGCCGGAAGGGGGCGGTGGACAGAGCAGCTTGTTAGCTAT
TGGAGGAGGAGGCAGCGGTGGAGGCGAGGGCGGTGATAGCGGGGACGGGA
TGGGATTAGGAGGTGTGGGTGGGGGCATGGACGTCATGCATGCCTACATG
CGACGCCAACAGCGACAGCGGCTGGAGCAGCGAAGACAGCAACGGCGGCA
GCAACCAACGGAGCGGCCGGGTCTTGACATGAACGCGATCCTGACGCCGT
TGTCGGGTGGCGGTGACGCTCCGGGGGTACCAGGAAGAGCGGACGGTGGT
AATAGAGGAGTCGGGGGGAGGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig67792:1820..2293+

>mRNA_H-elongata_contig67792.14387.1 ID=mRNA_H-elongata_contig67792.14387.1|Name=mRNA_H-elongata_contig67792.14387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig67792:1820..2293+ (Himanthalia elongata Himel1 dioecious)
CAGGGAGGTGGAGGGGGAGGTGGCGCTGAAGAAGAGAGTGGTGTGTTTGT
TTTCGGCAGAAGAGGCAGAAGAGGTGCCAGCAGCAGCAGCACGGATGACA
TGATGCAGTCCTTCGGGTTACAGCGACAGACGGACCAGGAAATGATGAAC
ACAATCCGGACGCCGGAAGGGGGCGGTGGACAGAGCAGCTTGTTAGCTAT
TGGAGGAGGAGGCAGCGGTGGAGGCGAGGGCGGTGATAGCGGGGACGGGA
TGGGATTAGGAGGTGTGGGTGGGGGCATGGACGTCATGCATGCCTACATG
CGACGCCAACAGCGACAGCGGCTGGAGCAGCGAAGACAGCAACGGCGGCA
GCAACCAACGGAGCGGCCGGGTCTTGACATGAACGCGATCCTGACGCCGT
TGTCGGGTGGCGGTGACGCTCCGGGGGTACCAGGAAGAGCGGACGGTGGT
AATAGAGGAGTCGGGGGGAGGCACCAGGGAGGTGGAGGGGGAGGTGGCGC
TGAAGAAGAGAGTGGTGTGTTTGTTTTCGGCAGAAGAGGCAGAAGAGGTG
CCAGCAGCAGCAGCACGGATGACATGATGCAGTCCTTCGGGTTACAGCGA
CAGACGGACCAGGAAATGATGAACACAATCCGGACGCCGGAAGGGGGCGG
TGGACAGAGCAGCTTGTTAGCTATTGGAGGAGGAGGCAGCGGTGGAGGCG
AGGGCGGTGATAGCGGGGACGGGATGGGATTAGGAGGTGTGGGTGGGGGC
ATGGACGTCATGCATGCCTACATGCGACGCCAACAGCGACAGCGGCTGGA
GCAGCGAAGACAGCAACGGCGGCAGCAACCAACGGAGCGGCCGGGTCTTG
ACATGAACGCGATCCTGACGCCGTTGTCGGGTGGCGGTGACGCTCCGGGG
GTACCAGGAAGAGCGGACGGTGGTAATAGAGGAGTCGGGGGGAGGCAC
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