mRNA_H-elongata_contig67720.14384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67720.14384.1
Unique NamemRNA_H-elongata_contig67720.14384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67720.14384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67720contigH-elongata_contig67720:2..2951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size337
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67720.14384.1prot_H-elongata_contig67720.14384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67720 54..2930 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.8833284-UTR-H-elongata_contig67720:1..531622931068.8833284-UTR-H-elongata_contig67720:1..53Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67720 2..53 +
1691679684.9351907-UTR-H-elongata_contig67720:1..531691679684.9351907-UTR-H-elongata_contig67720:1..53Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67720 2..53 +
1622931068.991259-UTR-H-elongata_contig67720:2930..29511622931068.991259-UTR-H-elongata_contig67720:2930..2951Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67720 2931..2951 +
1691679684.9842722-UTR-H-elongata_contig67720:2930..29511691679684.9842722-UTR-H-elongata_contig67720:2930..2951Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67720 2931..2951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.906472-CDS-H-elongata_contig67720:53..1611622931068.906472-CDS-H-elongata_contig67720:53..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 54..161 +
1691679684.9450483-CDS-H-elongata_contig67720:53..1611691679684.9450483-CDS-H-elongata_contig67720:53..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 54..161 +
1622931068.929526-CDS-H-elongata_contig67720:911..9901622931068.929526-CDS-H-elongata_contig67720:911..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 912..990 +
1691679684.9558604-CDS-H-elongata_contig67720:911..9901691679684.9558604-CDS-H-elongata_contig67720:911..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 912..990 +
1622931068.954779-CDS-H-elongata_contig67720:1314..13761622931068.954779-CDS-H-elongata_contig67720:1314..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 1315..1376 +
1691679684.9668736-CDS-H-elongata_contig67720:1314..13761691679684.9668736-CDS-H-elongata_contig67720:1314..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 1315..1376 +
1622931068.9718342-CDS-H-elongata_contig67720:2915..29301622931068.9718342-CDS-H-elongata_contig67720:2915..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 2916..2930 +
1691679684.975941-CDS-H-elongata_contig67720:2915..29301691679684.975941-CDS-H-elongata_contig67720:2915..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67720 2916..2930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67720.14384.1

>prot_H-elongata_contig67720.14384.1 ID=prot_H-elongata_contig67720.14384.1|Name=mRNA_H-elongata_contig67720.14384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MALAKGRTLAAGPLPKDEDLTVSSAPTLESAGSSTPAANPASGGGAPQGG
PDFTKGHPEALGARERSAEKTTVRPGDILEVPTEAGP*
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mRNA from alignment at H-elongata_contig67720:2..2951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67720.14384.1 ID=mRNA_H-elongata_contig67720.14384.1|Name=mRNA_H-elongata_contig67720.14384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2950bp|location=Sequence derived from alignment at H-elongata_contig67720:2..2951+ (Himanthalia elongata Himel1 dioecious)
AAGACGAATAATCTGTTGAGATAGTTGAGATCGATCGATCGATCACGTCA
TCATGGCGCTCGCGAAAGGCAGAACGCTGGCGGCCGGTCCTTTGCCCAAG
GACGAAGATCTGACGGTGTCTTCTGCGCCGACCTTGGAGAGCGCGGGTTC
TTCCACTCCGGCAAGCAGCAAGAGCAGCACACAACAGCATTAGCTGTAGA
TGTAGCAGCAGCAGCAGTTCTTCTTCTTCTTTTCTGTTTGTATGATTCGA
TTTCCACCCTCGGTTGCAGTTTTTGTAGCGAAGCTCGTTCGAGCTGTCCT
GCTTTTTGTTGTTGTTGCCCCCCTTTCGGCCCCCTACCCCTCCCCTTTCC
CCCCCTCGTCGTCAGCGGGTGCGGTAGGGTAGAATAAAGCCGTTTTGCCC
CTTCCCTCCCTCCCTCCCTCCCTCGGGTGTCGTTAGGTTTGTTTGCGACG
AAAGGGTTGTTAACGTTGTAGACACCACTAAGAGAAAAAGCATCTTAGAA
AGCGTTTCGGTGGTTAGCAATGGGAGTAACGGGAGTTGCATTAGCAGCAG
CAACAGCAACAGTGTTGATGCAAGATGCAAGGTAAATCTTACAGTGCGCG
TACGATCTTCCATCTTCCATCTTCCATCGTGCAGCATATTATTTTACCGT
GGTGCAGCTGACAACCCTCGCCTTTCTCTCGTGCCAGTTGACATTATGCC
AGGAAAAGCTGTAATGTGGGAGTAGTAGAATACCAACATTTTTCCTCCCA
AGCCCCGCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGTCAC
ATTCTCTCTCTCCCTCTCTCTCCTCGTAGATCTGATTCGCGTCGCCCACG
CCCTCCCTCCCTGAACGCGTCAAACGCCGCACTGTCGTGTCGTCTCCTCG
TGAAGTTCAGGCGGCAAACCCTGCGAGTGGGGGCGGTGCTCCGCAAGGTG
GACCTGACTTTACCAAGGGACACCCGGAAGCGCTCGGAGGTGATACGTTG
GGATGTGCCGAATTGAGCCCTTTCTTCGGCAGCCGAGCAGAGCAATCGTG
TTGCCCCCTTGATGTGGGCGAGGGAAGGAGGGAAAAGCGGATAACGAATT
GCGGCACGGCCTGAAAGCTGATCTCTCCGGCTTGACGCACGCCCCCGCCC
ACCCCCAGACCCAGATCCGTATCGAGCGTAAAATGTTTTTACGTACACGG
AGAGTCACTCGAAAATATATTTAGACTAAAAGTTTATCTCGATCCGTCTT
ATGACTAATCCGCTTCTCTCTTGATTCGGTCTTTTGTCCATGCTGATTTT
GGTTTTCAAGCAGCCAGAGAAAGGAGCGCCGAAAAAACGACCGTGAGGCC
AGGAGATATACTAGAGGTTCCAACGGTATGTGTTCGTATTGTGTTATTTT
TGTGTCTTGTGTTTGTTTGTGTGGTGAAAAAGCGGTAACCGCACGTAGGG
GAGCCCGTGGTTTGCTCTTGGCTGTAGCTTACTCTCATTGGCCATGTGCC
CTATTTTCTTGGTCTGGGGATGAAAATCCGTTGTGGTCGTGATGCAAACA
CTTAAGTCCTCGTTCGTTGGCCCGTTGACCACGCCTTTTTTTGCCACGCC
GCTTGCTGAAACGCTTCTTTCGATACACCTTTCCCCTTCTCTGGTGTATT
TCTCAAGGAAATATCCGGGATGAGCCTCGTGTGCACGGGTGTCTGTGTGT
GTGTGTGTGTGTTTGTGTGTTTGGTCATACACGGCCTTCCGTCGCCGTGT
ATGGCCAATGCGTCTCGATTTTTTTCCAAACCCGCCTATGGTTCGCACGC
AGAAAAGGTTTTTGTATTGAGCTCCGCAGCATGTTTTTGGCTTGTCGAGG
TGTTTCCTGTGTTTGTGTCCGCTCCTTCGTCGCGGAGCCGGCTCACGACG
TACTCGGTTAGTTGAGGTTTGAGTTGAGGTAACGGTGCTAATTGATGTCG
CGCATTCCCCCTTTTTGTGTTTGGGAGATGATGACCGATGAATGACCGGC
TTCATGTGTGTGTATGTGTATGTGTGTGTATGTGTGTGTGTGTGTATGTT
TTATTAAATTACACATAACCGCGCAGTCCGGCCCTGTCGTCCTAGTCCTT
TTATGCCACTCGTATTGATCCTCCTAGGGGGGGATCAATGATACTTATTT
CGAAAACCTCTGATCAAACGAGACAAAGGGGACACACTCTCGCTACTTGT
ACAATTCCTACTTGAAATCTGCGTAACTTGCCCCCCCCCCTGCTCCCTTC
TTACTCTCTAGATTGTCTGGGTTGGCAACTACTGAACCGATCCTTTTCTA
CGTTTTTTCCTCCTTCCTCCAGAGTCTCCTCCATTTCCTGCATGGCTTTT
ACAACTATTTTCCGACTTCTTGCGCTTTTTCACCTCGCTTCCGCCCTTCC
CGATCCTATCATCGTTAGCGTTCCCGGCTCCGCTTCCGTCCCCGTTCCCG
TCCCCGCTCCCCTCCGGTGTTCGTCTGCGGGTCTCTACCCCCGTCCCCGT
TCCCCCCCCGTCCCCACCCTGTGTTCCTTCGTTCGCCTCCACCCCCGTTC
CCGCTCCGTCCCCGTCCCCATGACCGTTCGTATCCCCGTTACCGTCTCCG
ATCCCACCTCCGACTCCAATACCACTCGCAACCCCGTTCGCTTCTCCCTT
TCCCTCCGACCCGGTTATCCCCACGGTACGATGCGCTTGTACGGATGCCC
ATCCTTGTGAACAAGGCTGTCGGTTGCTCACAAGCGTCACCCCCTCTCTT
CCACCCTCCCGGATTCTATCCTTGTGTGTGTGTGTGTGTGTTCTGAGAGG
GTGTGCGCGCGGGCGTGTGTACTTGGATGCGCTTAAACCAATGTCCAAAC
AAATCCTGCCGTTTCTTTCGTTGAAGTTTCTGCAAACTTTCCGATTCCCC
CCCCCGTCCAACAGGAAGCTGGACCTTGAACACCGACCACGAGCGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig67720:2..2951+

>mRNA_H-elongata_contig67720.14384.1 ID=mRNA_H-elongata_contig67720.14384.1|Name=mRNA_H-elongata_contig67720.14384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig67720:2..2951+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCTCGCGAAAGGCAGAACGCTGGCGGCCGGTCCTTTGCCCAAGGA
CGAAGATCTGACGGTGTCTTCTGCGCCGACCTTGGAGAGCGCGGGTTCTT
CCACTCCGATGGCGCTCGCGAAAGGCAGAACGCTGGCGGCCGGTCCTTTG
CCCAAGGACGAAGATCTGACGGTGTCTTCTGCGCCGACCTTGGAGAGCGC
GGGTTCTTCCACTCCGGCGGCAAACCCTGCGAGTGGGGGCGGTGCTCCGC
AAGGTGGACCTGACTTTACCAAGGGACACCCGGAAGCGCTCGGAGGCGGC
AAACCCTGCGAGTGGGGGCGGTGCTCCGCAAGGTGGACCTGACTTTACCA
AGGGACACCCGGAAGCGCTCGGAGCCAGAGAAAGGAGCGCCGAAAAAACG
ACCGTGAGGCCAGGAGATATACTAGAGGTTCCAACGCCAGAGAAAGGAGC
GCCGAAAAAACGACCGTGAGGCCAGGAGATATACTAGAGGTTCCAACGGA
AGCTGGACCTTGAGAAGCTGGACCTTGA
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