mRNA_H-elongata_contig67712.14382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67712.14382.1
Unique NamemRNA_H-elongata_contig67712.14382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A6H5JQI0_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQI0_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 9.260e-104
Identity = 138/162 (85.19%), Postives = 148/162 (91.36%), Query Frame = 1 
Query:    4 QVIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERRD 489
            +VIKAGRTL ++DLEADP+VMFQDSLDPWFALFMCF+LPA++    WGE FW+ FWVAGALRY VVLHFTW VNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASE+GV TQFNPTKM IDG A +GLVTNRKRA GAWSKLKERRD
Sbjct:  160 EVIKAGRTLSYADLEADPIVMFQDSLDPWFALFMCFVLPAMVANRGWGEDFWHGFWVAGALRYVVVLHFTWFVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEFGVSTQFNPTKMLIDGFAKLGLVTNRKRAVGAWSKLKERRD 321
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A835YYM0_9STRA (Stearoyl-CoA desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM0_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.090e-92
Identity = 129/162 (79.63%), Postives = 138/162 (85.19%), Query Frame = 1 
Query:    4 QVIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERRD 489
            +VI AGRTLDFSDLE DPVVMFQD LDPWFALFMCF  P L+ K+ WGE+FW  FWVAGALRYC VLH TW VNSAAHMFGDHPYD  SWP+ENP VSI A+GEGWHNWHHKYPFDYAASE+GV  QFNPTK+FID  A VGLV+ RKRATGAW KLKERRD
Sbjct:  169 EVIAAGRTLDFSDLERDPVVMFQDRLDPWFALFMCFFFPGLVAKYGWGENFWVGFWVAGALRYCWVLHCTWCVNSAAHMFGDHPYD-NSWPAENPVVSILAVGEGWHNWHHKYPFDYAASEFGVAAQFNPTKLFIDACANVGLVSKRKRATGAWEKLKERRD 329
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A835YKG8_9STRA (Stearoyl-CoA desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG8_9STRA)

HSP 1 Score: 278 bits (711), Expect = 2.000e-91
Identity = 125/161 (77.64%), Postives = 137/161 (85.09%), Query Frame = 1 
Query:    7 VIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERRD 489
            VI AGRTLDFSDLE DPVVMFQD LDPWFALFMCF  P L+ K  WG++FW  FWVAGALRYC VLH TW+VNSAAHMFGDHPYD  SWP+ENP VS+ ++GEGWHNWHHKYPFDYAASE+GVG Q+NPTK+FID  AA GLVT RKRA GAW KLK+RRD
Sbjct:  161 VIAAGRTLDFSDLERDPVVMFQDKLDPWFALFMCFFFPGLVAKFGWGDNFWVGFWVAGALRYCWVLHCTWMVNSAAHMFGDHPYD-ASWPAENPLVSLLSVGEGWHNWHHKYPFDYAASEFGVGAQYNPTKLFIDACAAAGLVTKRKRAAGAWEKLKQRRD 320
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A4D9CQB7_9STRA (FA_desaturase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQB7_9STRA)

HSP 1 Score: 270 bits (690), Expect = 3.060e-88
Identity = 114/161 (70.81%), Postives = 140/161 (86.96%), Query Frame = 1 
Query:    4 QVIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERR 486
            +V++ G+ LDFSDL ADPVV FQ   DPWFA FMCF++PAL+ +++WGE+FWNAFWVAG LRYC+VLHFTW+VNSAAH++GDHPYD   WP+ENP VS+ AIGEGWHNWHH+YP+DYAASE+G+  QFNPTK FID  AA+G+V+NRKRATGAW+KL+E R
Sbjct:  143 KVVEGGKQLDFSDLAADPVVRFQRDWDPWFAQFMCFVMPALVARYFWGEAFWNAFWVAGGLRYCLVLHFTWMVNSAAHLYGDHPYDPTIWPAENPLVSVVAIGEGWHNWHHRYPYDYAASEFGISRQFNPTKAFIDFFAAIGMVSNRKRATGAWAKLRESR 303
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A7S3UXY6_HETAK (Hypothetical protein n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXY6_HETAK)

HSP 1 Score: 266 bits (679), Expect = 7.350e-87
Identity = 118/161 (73.29%), Postives = 137/161 (85.09%), Query Frame = 1 
Query:    7 VIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERRD 489
            V+KAGR LDFSDL+AD  VMFQ  LDPWF LFMCF+ PAL+G + WGE FW  F+VAGA+RY  VLH TWLVNSAAH++GDHPYD +SWP+ENPFVS+ A+GEGWHNWHHKYPFDY+ASE+GV +QFNPTKM ID  AA G+VT+RKRA GAW KLKE+RD
Sbjct:  145 VVKAGRELDFSDLDADWTVMFQKKLDPWFTLFMCFVFPALVGTYGWGEDFWTGFYVAGAVRYIYVLHVTWLVNSAAHLYGDHPYDPQSWPAENPFVSLGALGEGWHNWHHKYPFDYSASEFGVSSQFNPTKMIIDLAAACGMVTDRKRANGAWGKLKEKRD 305
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A7S2C5X7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5X7_9STRA)

HSP 1 Score: 267 bits (682), Expect = 5.830e-86
Identity = 119/160 (74.38%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:    7 VIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERR 486
            V+ AGR LDFSDL  D  VMFQ  LDPWF LFM ++ P  + ++ WGE+FW A WVAGALRYC VLHFTW VNSAAH++GDHPYD  SWPSENPFVS+ AIGEGWHNWHHKYPFDYAASE+G+G QFNPTK+FID LA VGLVT RKRATGAW+KLKE+R
Sbjct:  178 VVAAGRLLDFSDLHEDGFVMFQKRLDPWFTLFMSYLFPGYVAQYCWGEAFWPAVWVAGALRYCCVLHFTWCVNSAAHIWGDHPYDPSSWPSENPFVSLGAIGEGWHNWHHKYPFDYAASEFGIGRQFNPTKLFIDSLAVVGLVTKRKRATGAWTKLKEKR 337
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: F0YLN3_AURAN (FA_desaturase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLN3_AURAN)

HSP 1 Score: 262 bits (669), Expect = 1.460e-85
Identity = 117/161 (72.67%), Postives = 135/161 (83.85%), Query Frame = 1 
Query:    7 VIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERRD 489
            ++  G+ LDFSDL  D  VMFQ  LDPWF LFMCF+ PAL+ K  WGE+FWNAFWVAGALRY VVLH TWLVNSAAH FGDHPYD + WP+ENPFVS+ +IGEGWHNWHHKYP+DYAASE+G+G+QFNPTK+FIDG AA+GLV NRKRAT AW + K +RD
Sbjct:  119 IMVEGKKLDFSDLSRDGFVMFQKHLDPWFTLFMCFVFPALVAKFGWGENFWNAFWVAGALRYVVVLHCTWLVNSAAHFFGDHPYDDQ-WPAENPFVSLASIGEGWHNWHHKYPYDYAASEFGIGSQFNPTKLFIDGAAALGLVWNRKRATSAWERSKVKRD 278
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A7S2UMM7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMM7_9STRA)

HSP 1 Score: 262 bits (670), Expect = 2.640e-85
Identity = 115/161 (71.43%), Postives = 135/161 (83.85%), Query Frame = 1 
Query:    7 VIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERRD 489
            V+ AGR LDFSDL  D  VMFQ  LDPWF L+MCF++PA +  H+WGE FWNAF+VAGALRY +VLHFTWLVNSAAH++GDHPYD+ S+PSENP VS C++GEGWHNWHHKYPFDYAASEYG+ +QFNP+K+FID LAAVGLV  RKR T AW+  + RRD
Sbjct:  146 VVAAGRQLDFSDLSEDAFVMFQKKLDPWFTLYMCFVMPAQVASHFWGEDFWNAFFVAGALRYVIVLHFTWLVNSAAHLYGDHPYDYLSYPSENPIVSFCSVGEGWHNWHHKYPFDYAASEYGISSQFNPSKLFIDILAAVGLVWGRKRGTAAWAHGRARRD 306
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BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A7S2DV71_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DV71_9STRA)

HSP 1 Score: 256 bits (655), Expect = 5.600e-85
Identity = 114/161 (70.81%), Postives = 134/161 (83.23%), Query Frame = 1 
Query:    7 VIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERRD 489
            V+KAGR LDFSDL  D +VMFQ  LDPWF L+MCF++PA +   +WGE FWNAF+VAG LRY VVLHFTWLVNSAAH++GDHPYD  S+P+ENP VS C++GEGWHNWHHKYPFDYAASE+G+ +QFNP+K+FID LAAVGLV  RKR T AW+  K RRD
Sbjct:    7 VVKAGRELDFSDLYEDSLVMFQKKLDPWFTLYMCFVMPAQVAAAFWGEEFWNAFFVAGCLRYAVVLHFTWLVNSAAHLYGDHPYDVLSYPAENPIVSFCSVGEGWHNWHHKYPFDYAASEFGISSQFNPSKLFIDMLAAVGLVWGRKRGTAAWAMGKARRD 167
[Close]
BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Match: A0A7S2UX82_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX82_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.810e-83
Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 1 
Query:    7 VIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGESFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSICAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKRATGAWSKLKERR 486
            VIKAG+ LDFSDL ADPVV+FQ   DPWFALFMCF+LP L+   W G++FWN +WVAGALRY  VLH TWLVNSAAH++GDHPYD KSWP+ENP VS  A+GEGWHNWHHKYPFDYAASEYG+  QFNPTK+ ID  A VG V+ RKRATGAW KLK+RR
Sbjct:  144 VIKAGKELDFSDLLADPVVVFQKRTDPWFALFMCFVLPGLVCTLW-GDNFWNGYWVAGALRYVYVLHCTWLVNSAAHLYGDHPYDPKSWPAENPMVSYAALGEGWHNWHHKYPFDYAASEYGLMAQFNPTKVLIDVCAMVGQVSQRKRATGAWEKLKDRR 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67712.14382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQI0_9PHAE9.260e-10485.19FA_desaturase domain-containing protein n=2 Tax=Ec... [more]
A0A835YYM0_9STRA2.090e-9279.63Stearoyl-CoA desaturase n=1 Tax=Tribonema minus Ta... [more]
A0A835YKG8_9STRA2.000e-9177.64Stearoyl-CoA desaturase n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CQB7_9STRA3.060e-8870.81FA_desaturase domain-containing protein n=3 Tax=Mo... [more]
A0A7S3UXY6_HETAK7.350e-8773.29Hypothetical protein n=6 Tax=Heterosigma akashiwo ... [more]
A0A7S2C5X7_9STRA5.830e-8674.38Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
F0YLN3_AURAN1.460e-8572.67FA_desaturase domain-containing protein n=1 Tax=Au... [more]
A0A7S2UMM7_9STRA2.640e-8571.43Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2DV71_9STRA5.600e-8570.81Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2UX82_9STRA1.810e-8373.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67712contigH-elongata_contig67712:1867..2821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.1
Seed ortholog evalue2.4e-81
Seed eggNOG ortholog2880.D8LSZ1
Preferred nameSCD5
KEGG rclassRC00917
KEGG koko:K00507,ko:K06227,ko:K15331,ko:K20641
KEGG ReactionR02222
KEGG Pathwayko01040,ko01212,ko03320,ko04152,ko04212,ko04341,map01040,map01212,map03320,map04152,map04212,map04341
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0001101,GO:0001676,GO:0002376,GO:0003674,GO:0003824,GO:0004768,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006723,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007049,GO:0007154,GO:0007272,GO:0007275,GO:0007399,GO:0007584,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008150,GO:0008152,GO:0008202,GO:0008361,GO:0008366,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009605,GO:0009607,GO:0009617,GO:0009743,GO:0009744,GO:0009889,GO:0009893,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010506,GO:0010817,GO:0010872,GO:0010873,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016053,GO:0016215,GO:0016491,GO:0016705,GO:0016717,GO:0018130,GO:0019098,GO:0019216,GO:0019218,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019748,GO:0019752,GO:0019953,GO:0022402,GO:0022414,GO:0030104,GO:0030154,GO:0030176,GO:0030258,GO:0031224,GO:0031227,GO:0031323,GO:0031325,GO:0031329,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032787,GO:0032896,GO:0033500,GO:0033559,GO:0033561,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034285,GO:0034433,GO:0034434,GO:0034435,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0040008,GO:0040014,GO:0040018,GO:0042175,GO:0042221,GO:0042335,GO:0042445,GO:0042446,GO:0042552,GO:0042592,GO:0042593,GO:0042594,GO:0042742,GO:0042759,GO:0042810,GO:0042811,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043588,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0043903,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045087,GO:0045444,GO:0045540,GO:0045570,GO:0045572,GO:0045793,GO:0045834,GO:0045926,GO:0045927,GO:0045940,GO:0046390,GO:0046394,GO:0046483,GO:0046486,GO:0046620,GO:0046622,GO:0046872,GO:0046890,GO:0046914,GO:0046949,GO:0048047,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048609,GO:0048638,GO:0048639,GO:0048731,GO:0048732,GO:0048733,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0050830,GO:0050872,GO:0050873,GO:0050878,GO:0050891,GO:0050896,GO:0051094,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051301,GO:0051704,GO:0051707,GO:0051716,GO:0055086,GO:0055088,GO:0055090,GO:0055114,GO:0060179,GO:0061640,GO:0062012,GO:0065007,GO:0065008,GO:0070013,GO:0070328,GO:0070542,GO:0070887,GO:0071496,GO:0071616,GO:0071704,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0080090,GO:0090066,GO:0090181,GO:0090407,GO:0097708,GO:0098542,GO:0098827,GO:0106118,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901700,GO:1902930,GO:1903047,GO:1903699,GO:1903964,GO:1903966,GO:2000026
EggNOG free text desc.oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
EggNOG OGsCOG1398@1,KOG1600@2759
EC1.14.19.1,2.1.1.35
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko03016,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.7362084-CDS-H-elongata_contig67712:1866..20261622931068.7362084-CDS-H-elongata_contig67712:1866..2026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67712 1867..2026 -
1691679684.902153-CDS-H-elongata_contig67712:1866..20261691679684.902153-CDS-H-elongata_contig67712:1866..2026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67712 1867..2026 -
1622931068.7591562-CDS-H-elongata_contig67712:2492..28211622931068.7591562-CDS-H-elongata_contig67712:2492..2821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67712 2493..2821 -
1691679684.9133558-CDS-H-elongata_contig67712:2492..28211691679684.9133558-CDS-H-elongata_contig67712:2492..2821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67712 2493..2821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67712.14382.1prot_H-elongata_contig67712.14382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67712 1867..2821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67712.14382.1

>prot_H-elongata_contig67712.14382.1 ID=prot_H-elongata_contig67712.14382.1|Name=mRNA_H-elongata_contig67712.14382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MQVIKAGRTLDFSDLEADPVVMFQDSLDPWFALFMCFMLPALIGKHWWGE
SFWNAFWVAGALRYCVVLHFTWLVNSAAHMFGDHPYDHKSWPSENPFVSI
CAIGEGWHNWHHKYPFDYAASEYGVGTQFNPTKMFIDGLAAVGLVTNRKR
ATGAWSKLKERRD
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mRNA from alignment at H-elongata_contig67712:1867..2821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67712.14382.1 ID=mRNA_H-elongata_contig67712.14382.1|Name=mRNA_H-elongata_contig67712.14382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=955bp|location=Sequence derived from alignment at H-elongata_contig67712:1867..2821- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGATCAAGGCCGGCCGGACTCTGGACTTCTCTGACCTTGAGGC
CGACCCGGTGGTGATGTTCCAGGACAGTTTGGATCCCTGGTTCGCACTTT
TCATGTGCTTTATGCTGCCCGCGCTGATTGGAAAGCACTGGTGGGGGGAG
AGCTTCTGGAACGCCTTTTGGGTGGCGGGAGCGCTTCGCTACTGCGTCGT
GCTTCACTTTACGTGGCTGGTGAACTCCGCCGCGCACATGTTCGGAGACC
ACCCGTACGACCACAAGTCCTGGCCCTCCGAGAACCCCTTCGTTTCCATC
TGCGCTATCGGGGAGGGGTGGCACAACTGGTGAGTTGTGGGAGGCGTTTT
TCACCGTCGAGGTGTGTGTTTTAACTCACCACCTTTGTATAAAAGCTTTT
AACTTGCAGTGTGCAAAAAATCCTTTGTATGAAAATTTACAGGCAAAACG
GTAAGACAGGTCGTGGATCTTGTACTGTAGCGTGGTCTGGCCTTGAGTCT
GAAAACATTGCCATACAACTGGGTGGAAGACGCGGAAACATCGAGCGTAG
AATTGAAACGGAATGGCCTCTTTTGTGTAGTTTGATGCGGAGGCAGCCCC
ACGCTCACACAAGAGTCATAGTAAACTTCACGCTCTTTCGAGGCTTGCGT
GACGCTTGTATGGCTCGCCGCTACTCGTATGATGCGCGAATAATGCCTTC
GGTCCGTGACTCTCTTGGTGTCTTCCTCTCTCGCTATCGTTCTCTCTCTC
TCGACCAAACAAACAAACAAACACCGTTACCTCGTTGTCGCTCAGGCACC
ACAAGTACCCCTTCGACTACGCAGCATCCGAGTATGGCGTTGGTACTCAG
TTCAACCCCACCAAGATGTTCATCGATGGTCTTGCCGCGGTCGGCCTCGT
GACCAACCGCAAGCGCGCGACGGGCGCGTGGTCGAAGTTAAAGGAACGCC
GCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig67712:1867..2821-

>mRNA_H-elongata_contig67712.14382.1 ID=mRNA_H-elongata_contig67712.14382.1|Name=mRNA_H-elongata_contig67712.14382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig67712:1867..2821- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGATCAAGGCCGGCCGGACTCTGGACTTCTCTGACCTTGAGGC
CGACCCGGTGGTGATGTTCCAGGACAGTTTGGATCCCTGGTTCGCACTTT
TCATGTGCTTTATGCTGCCCGCGCTGATTGGAAAGCACTGGTGGGGGGAG
AGCTTCTGGAACGCCTTTTGGGTGGCGGGAGCGCTTCGCTACTGCGTCGT
GCTTCACTTTACGTGGCTGGTGAACTCCGCCGCGCACATGTTCGGAGACC
ACCCGTACGACCACAAGTCCTGGCCCTCCGAGAACCCCTTCGTTTCCATC
TGCGCTATCGGGGAGGGGTGGCACAACTGATGCAGGTGATCAAGGCCGGC
CGGACTCTGGACTTCTCTGACCTTGAGGCCGACCCGGTGGTGATGTTCCA
GGACAGTTTGGATCCCTGGTTCGCACTTTTCATGTGCTTTATGCTGCCCG
CGCTGATTGGAAAGCACTGGTGGGGGGAGAGCTTCTGGAACGCCTTTTGG
GTGGCGGGAGCGCTTCGCTACTGCGTCGTGCTTCACTTTACGTGGCTGGT
GAACTCCGCCGCGCACATGTTCGGAGACCACCCGTACGACCACAAGTCCT
GGCCCTCCGAGAACCCCTTCGTTTCCATCTGCGCTATCGGGGAGGGGTGG
CACAACTGGCACCACAAGTACCCCTTCGACTACGCAGCATCCGAGTATGG
CGTTGGTACTCAGTTCAACCCCACCAAGATGTTCATCGATGGTCTTGCCG
CGGTCGGCCTCGTGACCAACCGCAAGCGCGCGACGGGCGCGTGGTCGAAG
TTAAAGGAACGCCGCGACGCACCACAAGTACCCCTTCGACTACGCAGCAT
CCGAGTATGGCGTTGGTACTCAGTTCAACCCCACCAAGATGTTCATCGAT
GGTCTTGCCGCGGTCGGCCTCGTGACCAACCGCAAGCGCGCGACGGGCGC
GTGGTCGAAGTTAAAGGAACGCCGCGAC
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