mRNA_H-elongata_contig67711.14381.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67711.14381.1
Unique NamemRNA_H-elongata_contig67711.14381.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: D8LLE4_ECTSI (PRLI-interacting factor L-like (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.940e-33
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCLVPE 255
            FN+FM +F++ENS +LFR KGVLAFKDQ +KFVFQ GVH+Q+ CEP+ N WA +G +R SKIVFIGL LDK+YITE  K C+VPE
Sbjct:    2 FNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQ-GVHEQIDCEPAINGWA-EGEERVSKIVFIGLDLDKDYITESFKACIVPE 84          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A6H5K110_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K110_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.380e-29
Identity = 56/85 (65.88%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCLVPE 255
            FN+FM +F++ENS +LFR KGVLAFKDQ +K+VFQ GVH+Q+ CEP+ N WA +G +RESKIVFIGL LD +YITE +K C+VPE
Sbjct:  415 FNKFMGEFLRENSANLFRSKGVLAFKDQERKYVFQ-GVHEQIDCEPAINGWA-EGEERESKIVFIGLDLDNDYITESLKACIVPE 497          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A7S3JV87_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV87_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.860e-14
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQ-KFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCLVPED 258
            FN FM + ++  + DL+R KGVL+F  Q   KFVFQ GVH+Q+   P+ + W  +   R SKIVFIG  LD++++ E I+ CLV  D
Sbjct:  263 FNLFMAELLQTRAADLYRTKGVLSFAGQGDTKFVFQ-GVHEQINFGPAQSPWQPN-EPRVSKIVFIGRNLDRKFLNESIRACLVSSD 347          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A6U2FXS0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2FXS0_HEMAN)

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-13
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGC 243
            FN FM   ++  + DL+R KGVL FK    KFVF  GVH+Q+   PS   WA  G     K+VFIG +LD+ ++T+ I GC
Sbjct:   51 FNTFMTSLLQTRANDLYRCKGVLKFKGNDDKFVFH-GVHEQIEFGPSEVGWAQ-GEKIMVKMVFIGRKLDRAFLTDGITGC 129          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A7S0VMP5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VMP5_9CRYP)

HSP 1 Score: 69.3 bits (168), Expect = 7.510e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGC 243
            FN FM + ++  + DL+R KGVL FK    KFVF  GVH+Q+   PS   WA  G     K+VFIG +LD+ ++T+ I GC
Sbjct:  441 FNMFMTNLLQTRANDLYRCKGVLKFKGNDDKFVFH-GVHEQIEFGPSEVGWAQ-GEKIMVKMVFIGRKLDRAFLTDGITGC 519          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A0K2D9W3_9HYPH (Cobalamin biosynthesis protein CobW n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A0K2D9W3_9HYPH)

HSP 1 Score: 63.5 bits (153), Expect = 7.190e-10
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGC 243
            F  ++ D ++    ++ R KG+LAF+D+P++FVFQ GVH  +       EW   G +R SKIVFIG  LDKE I E    C
Sbjct:  270 FLPWVNDLVQREGPNILRSKGILAFRDEPRRFVFQ-GVH-MILDGDLQREWKP-GEERRSKIVFIGRNLDKEAIREGFLAC 347          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A6M5YHV0_9BACT (Metal chaperone, involved in Zn homeostasis n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YHV0_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.920e-9
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    4 NEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
            N++M + ++    D+FR KGVL+ K++P +FVFQ GVH  +        W    + R +K+VFIG +LD+E +TE  K CL
Sbjct:  289 NKWMSELLQSKGPDIFRMKGVLSIKNEPNRFVFQ-GVH-MLFDGKLDKPWGK--TPRSNKLVFIGRKLDREALTEGFKSCL 365          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A2Z3H994_9BACT (Cobalamin biosynthesis protein CobW n=3 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3H994_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 3.610e-9
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    4 NEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
            N++M + ++E   D+FR KGVL+ K+ P +FVFQ GVH      P    W    + R +K++FIG  LD+  +TE  K CL
Sbjct:  292 NKWMMELLQEKGPDIFRMKGVLSIKNDPNRFVFQ-GVHMLFDGRPDK-PWGK--TPRSNKLIFIGRNLDRGALTEGFKSCL 368          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: UPI00036B32B1 (GTP-binding protein n=1 Tax=Zavarzinella formosa TaxID=360055 RepID=UPI00036B32B1)

HSP 1 Score: 61.2 bits (147), Expect = 5.190e-9
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    4 NEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
            N+++ D ++E  +D+FR KGVL+ K  P +FVFQ GVH      P   EW    + R +K+VFIG  LD++ + E    CL
Sbjct:  368 NKWLADLLQEKGQDIFRMKGVLSLKGDPNRFVFQ-GVHMTFDGRPD-REWG--DTPRSNKLVFIGRNLDRKALNEGFAKCL 444          
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A1B3E1L4_9PSED (Cobalamin biosynthesis protein n=1 Tax=Pseudomonas sp. TCU-HL1 TaxID=1856685 RepID=A0A1B3E1L4_9PSED)

HSP 1 Score: 60.8 bits (146), Expect = 6.650e-9
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
            F+ ++ +   E  ++LFR KG+LA KDQ Q++V Q GVH  +    ++  W      R SKIVFIG  LD+E + E+ + CL
Sbjct:  277 FHRWIAELRDEQGENLFRMKGILAVKDQDQRYVLQ-GVHSLIEFR-AAQPWG--NQPRSSKIVFIGRDLDREALNERFQACL 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLE4_ECTSI5.940e-3367.06PRLI-interacting factor L-like (ISS) n=1 Tax=Ectoc... [more]
A0A6H5K110_9PHAE2.380e-2965.88CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S3JV87_9STRA6.860e-1445.98Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6U2FXS0_HEMAN3.700e-1345.68Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0VMP5_9CRYP7.510e-1245.68Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A0K2D9W3_9HYPH7.190e-1043.21Cobalamin biosynthesis protein CobW n=6 Tax=Proteo... [more]
A0A6M5YHV0_9BACT1.920e-940.74Metal chaperone, involved in Zn homeostasis n=1 Ta... [more]
A0A2Z3H994_9BACT3.610e-940.74Cobalamin biosynthesis protein CobW n=3 Tax=Gemmat... [more]
UPI00036B32B15.190e-940.74GTP-binding protein n=1 Tax=Zavarzinella formosa T... [more]
A0A1B3E1L4_9PSED6.650e-940.24Cobalamin biosynthesis protein n=1 Tax=Pseudomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67711contigH-elongata_contig67711:1164..1662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog2880.D8LLE4
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
Ec32 orthologEc-27_002320.1
Exons2
Model size261
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67711.14381.1prot_H-elongata_contig67711.14381.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67711 1176..1662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.6255174-UTR-H-elongata_contig67711:1163..11751622931068.6255174-UTR-H-elongata_contig67711:1163..1175Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67711 1164..1175 +
1691679684.8758516-UTR-H-elongata_contig67711:1163..11751691679684.8758516-UTR-H-elongata_contig67711:1163..1175Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67711 1164..1175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.6488094-CDS-H-elongata_contig67711:1175..12681622931068.6488094-CDS-H-elongata_contig67711:1175..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67711 1176..1268 +
1691679684.8850377-CDS-H-elongata_contig67711:1175..12681691679684.8850377-CDS-H-elongata_contig67711:1175..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67711 1176..1268 +
1622931068.6739748-CDS-H-elongata_contig67711:1506..16621622931068.6739748-CDS-H-elongata_contig67711:1506..1662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67711 1507..1662 +
1691679684.893339-CDS-H-elongata_contig67711:1506..16621691679684.893339-CDS-H-elongata_contig67711:1506..1662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67711 1507..1662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67711.14381.1

>prot_H-elongata_contig67711.14381.1 ID=prot_H-elongata_contig67711.14381.1|Name=mRNA_H-elongata_contig67711.14381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAAD
GSDRESKIVFIGLRLDKEYITEKIKGCLVPED*
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mRNA from alignment at H-elongata_contig67711:1164..1662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67711.14381.1 ID=mRNA_H-elongata_contig67711.14381.1|Name=mRNA_H-elongata_contig67711.14381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=499bp|location=Sequence derived from alignment at H-elongata_contig67711:1164..1662+ (Himanthalia elongata Himel1 dioecious)
TTCAACGAATTCATGAGAGATTTCATGAAGGAGAATAGCAAAGATCTCTT CCGTCAAAAAGGGGTCCTCGCGTTTAAGGACCAGCCCCAGAAGTTCGTCT TTCAGGTGTGTTCGATGAATTTTACCGGAGTGTATGTTTTCTCGACGATC GCTCGCTCTTGTTGCTTTTCGAAAATAAAAAGAATATCGAACAGCCTGCC CGCGTAGCAAGTAGAATCTTAAAAAATATACTGATGATCTGTTTTTGATG TGTTACTCACGAGCTGCGCGCAGAAAGCATTGTAGTTAACTTTGTGCTCG CTCCCTTTTTTATTTTTATTTTTTCGTGATTTGCGTGGACGAGCAGGGCG TGCATGATCAAGTGACTTGCGAGCCTAGCAGCAACGAGTGGGCGGCAGAC GGCAGCGACCGCGAGAGCAAAATCGTGTTTATAGGTCTCCGCCTCGACAA AGAATATATTACCGAGAAGATCAAGGGATGCCTCGTCCCTGAGGATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig67711:1164..1662+

>mRNA_H-elongata_contig67711.14381.1 ID=mRNA_H-elongata_contig67711.14381.1|Name=mRNA_H-elongata_contig67711.14381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig67711:1164..1662+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGATTTCATGAAGGAGAATAGCAAAGATCTCTTCCGTCAAAAAGG
GGTCCTCGCGTTTAAGGACCAGCCCCAGAAGTTCGTCTTTCAGATGAGAG
ATTTCATGAAGGAGAATAGCAAAGATCTCTTCCGTCAAAAAGGGGTCCTC
GCGTTTAAGGACCAGCCCCAGAAGTTCGTCTTTCAGCAGGGCGTGCATGA
TCAAGTGACTTGCGAGCCTAGCAGCAACGAGTGGGCGGCAGACGGCAGCG
ACCGCGAGAGCAAAATCGTGTTTATAGGTCTCCGCCTCGACAAAGAATAT
ATTACCGAGAAGATCAAGGGATGCCTCGTCCCTGAGGATTAACAGGGCGT
GCATGATCAAGTGACTTGCGAGCCTAGCAGCAACGAGTGGGCGGCAGACG
GCAGCGACCGCGAGAGCAAAATCGTGTTTATAGGTCTCCGCCTCGACAAA
GAATATATTACCGAGAAGATCAAGGGATGCCTCGTCCCTGAGGATTAA
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