mRNA_H-elongata_contig67693.14377.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67693.14377.1
Unique NamemRNA_H-elongata_contig67693.14377.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67693.14377.1 vs. uniprot
Match: D8LJW6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW6_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.770e-5
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 YGETSHTQVANLLLGAGADVEFTTDQLFTPLLIASFNGNLRLAK 132
            + E  H + A +LL AGA++E TTDQLFTPLLIA FNG L L+K
Sbjct:  129 FEECGHMKAARVLLKAGANLESTTDQLFTPLLIAVFNGKLGLSK 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67693.14377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW6_ECTSI4.770e-561.36Inversin protein alternative isoform n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67693contigH-elongata_contig67693:574..2586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_009930.1
Exons5
Model size753
Cds size753
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67693.14377.1prot_H-elongata_contig67693.14377.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67693 574..2586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.193556-CDS-H-elongata_contig67693:573..6811622931068.193556-CDS-H-elongata_contig67693:573..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 574..681 -
1691679684.6918302-CDS-H-elongata_contig67693:573..6811691679684.6918302-CDS-H-elongata_contig67693:573..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 574..681 -
1622931068.2096143-CDS-H-elongata_contig67693:1104..12421622931068.2096143-CDS-H-elongata_contig67693:1104..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 1105..1242 -
1691679684.7053273-CDS-H-elongata_contig67693:1104..12421691679684.7053273-CDS-H-elongata_contig67693:1104..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 1105..1242 -
1622931068.2251215-CDS-H-elongata_contig67693:1655..18021622931068.2251215-CDS-H-elongata_contig67693:1655..1802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 1656..1802 -
1691679684.7152185-CDS-H-elongata_contig67693:1655..18021691679684.7152185-CDS-H-elongata_contig67693:1655..1802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 1656..1802 -
1622931068.2396498-CDS-H-elongata_contig67693:1984..20991622931068.2396498-CDS-H-elongata_contig67693:1984..2099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 1985..2099 -
1691679684.7261062-CDS-H-elongata_contig67693:1984..20991691679684.7261062-CDS-H-elongata_contig67693:1984..2099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 1985..2099 -
1622931068.255844-CDS-H-elongata_contig67693:2341..25861622931068.255844-CDS-H-elongata_contig67693:2341..2586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 2342..2586 -
1691679684.7372413-CDS-H-elongata_contig67693:2341..25861691679684.7372413-CDS-H-elongata_contig67693:2341..2586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67693 2342..2586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67693.14377.1

>prot_H-elongata_contig67693.14377.1 ID=prot_H-elongata_contig67693.14377.1|Name=mRNA_H-elongata_contig67693.14377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
YGETSHTQVANLLLGAGADVEFTTDQLFTPLLIASFNGNLRLAKRLVSAG
ANLEAKNEQHFTAACIAAQQGHTKLLGFLLDRGADIESRTATMLTPLLVA
AQEGRAPAVQLLLLRGANFEARNDRHLSPLALASDFGKIEVVRQLVDTGV
ETERRDFRGNTAIMHASREGHAQVVVELLKACADPSITNNDEVSPLSLAV
KHGHDDVVVLLLDGGANVKSANKSGFTALLRAAEGGRTDIYQVGIPDREC
Y
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mRNA from alignment at H-elongata_contig67693:574..2586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67693.14377.1 ID=mRNA_H-elongata_contig67693.14377.1|Name=mRNA_H-elongata_contig67693.14377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2013bp|location=Sequence derived from alignment at H-elongata_contig67693:574..2586- (Himanthalia elongata Himel1 dioecious)
TACGGTGAAACGTCACACACACAGGTGGCAAACCTTCTACTCGGTGCCGG
AGCGGACGTGGAGTTTACCACCGATCAGCTCTTCACCCCTCTTCTCATCG
CCTCCTTCAATGGAAACTTAAGGCTTGCGAAACGTCTTGTGTCCGCCGGA
GCAAACCTCGAGGCCAAGAACGAGCAGCACTTCACTGCAGCGTGCATCGC
GGCACAGCAGGGGCATACCAAGCTCTTGGGCTTCCTCTTGGACAGGTCAG
GTCGGCGACAAGCTTGCCAGGGGGGAAGAAGAGAAGTCTCGAGTAATAGG
CTCACTGGTTCGTTACCTGGTACACCACCCTAGGGGTGTTATGACGTTTG
CGGAGTCTTTGCGGCTAGCCTCCCTTACGTTGAAGATTCTGCCCTGATCG
GTGACCAAAATAATGAAATGGCGAGACTAATGAACTGCCTGCAACTGACT
GCGCGTGTGTCGGAACTGTATGAACCTTGATCTCCAGGGGCGCGGATATT
GAGTCGCGTACGGCCACCATGCTGACTCCACTTTTGGTGGCAGCGCAGGA
GGGGAGGGCGCCAGCGGTCCAATTGCTTCTTTTGCGTGGGGCAAATTTTG
AGGTCAAATAAAACGCGCCGAGTCGAGGAAAAGCTTTTAGAGTCTTAAAT
ACTATGCATAATTCGGAGATAAAACACAAAGTTGATTTGAATGGGATGCC
GCTCCCCGAGGTCTTGTATGTCATGCGTACGACCGTGATAAGGGCCTTAT
CATGTCGCTTGTCTACGCGCGTTTCCCTATCAAGGCGAGAAACGATCGAC
ATCTCAGCCCGCTGGCCCTCGCGAGCGACTTCGGGAAGATTGAGGTGGTT
CGTCAGCTAGTTGATACCGGCGTCGAAACAGAAAGACGGGACTTCCGGGG
CAACACAGCGATCATGCATGCCTCTCGCGAGGTATCCCCTGTGGGGCTTA
CTGTTTCGAGGTTTCCAGCAACTGGTTGCTAGCAACTGCTTGCCTCGCTT
ACTGGAAAAGTTATCTGAAGCGCAAATGAAAATATGACTGAGTTGCGTCA
CCATAATTATGCAGTTGCGGCAATGATAAGGCGCTGAATAGACAACACAT
AAATTTTCAACCACAAAAACAACAAACATCCAATCTCATCGATCGAATCC
GAGACTTTTGTACCTGTGTGGCATTTGTGGGGGCGAGGGGAGGGGTTGCC
TACTCGTCAAGTCCCATCCTCGTCGAAAATGATACGCTGGACGGCTCCGC
CAGGTGGGGCCGTCTTGTAGAGAATCTCCCAAACCTCGTCAAATCCATGC
ATACTCCTTGGAAAATATCCTCGTGTGCGTACACCGGAATCCAGGGACAC
GCTCAAGTGGTGGTCGAGCTCCTAAAGGCGTGCGCGGACCCGTCGATCAC
AAATAATGATGAGGTCTCGCCGCTCTCCCTGGCGGTGAAGCATGGGCACG
ATGATGTCGTGGTATTGCTACTCGATGGAGGGGTAAGTCGTCATGCTGAG
CTTTGGGTGACGCTACGTTTAACAACCCTTCGAAACGTCCACACCGAATC
GGGCGCGGTGTGCCGTAGATAGCGACATGCGCGGATGCTTCTCCAAATAA
CCAAAATTGGATGTCAACGTATTGAGTCAATCAAGTTTGCGCCCACTTTT
TAACGGTATCGCACGAGTGCGCGGACAAATTAATTTTCCATTTCTTTACA
ATGAACAGACCGGATCGGGCGACACGGACGTATTGCTTGTCAGTCATCGG
TGGCACGTAGGCTGTTTTTCTCTTCGTCGAGCGGTCGAGGTTCCGACCAT
TTTATAGTCTTGTTGATGGGGATGGGTTTTTTTCTCCTTGCCTTTTATTG
AAAGTCTCTTGAATGTCTTGCGGCCAAGCGTTTGCCCCCTTCGATGTCCT
GACAGGCCAACGTAAAGTCGGCAAACAAGAGTGGCTTCACGGCGCTGCTG
AGGGCTGCGGAAGGCGGGCGCACCGATATATACCAGGTGGGCATTCCTGA
CAGAGAATGTTAT
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Coding sequence (CDS) from alignment at H-elongata_contig67693:574..2586-

>mRNA_H-elongata_contig67693.14377.1 ID=mRNA_H-elongata_contig67693.14377.1|Name=mRNA_H-elongata_contig67693.14377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig67693:574..2586- (Himanthalia elongata Himel1 dioecious)
TACGGTGAAACGTCACACACACAGGTGGCAAACCTTCTACTCGGTGCCGG
AGCGGACGTGGAGTTTACCACCGATCAGCTCTTCACCCCTCTTCTCATCG
CCTCCTTCAATGGAAACTTAAGGCTTGCGAAACGTCTTGTGTCCGCCGGA
GCAAACCTCGAGGCCAAGAACGAGCAGCACTTCACTGCAGCGTGCATCGC
GGCACAGCAGGGGCATACCAAGCTCTTGGGCTTCCTCTTGGACAGTACGG
TGAAACGTCACACACACAGGTGGCAAACCTTCTACTCGGTGCCGGAGCGG
ACGTGGAGTTTACCACCGATCAGCTCTTCACCCCTCTTCTCATCGCCTCC
TTCAATGGAAACTTAAGGCTTGCGAAACGTCTTGTGTCCGCCGGAGCAAA
CCTCGAGGCCAAGAACGAGCAGCACTTCACTGCAGCGTGCATCGCGGCAC
AGCAGGGGCATACCAAGCTCTTGGGCTTCCTCTTGGACAGGGGCGCGGAT
ATTGAGTCGCGTACGGCCACCATGCTGACTCCACTTTTGGTGGCAGCGCA
GGAGGGGAGGGCGCCAGCGGTCCAATTGCTTCTTTTGCGTGGGGCAAATT
TTGAGGGGCGCGGATATTGAGTCGCGTACGGCCACCATGCTGACTCCACT
TTTGGTGGCAGCGCAGGAGGGGAGGGCGCCAGCGGTCCAATTGCTTCTTT
TGCGTGGGGCAAATTTTGAGGCGAGAAACGATCGACATCTCAGCCCGCTG
GCCCTCGCGAGCGACTTCGGGAAGATTGAGGTGGTTCGTCAGCTAGTTGA
TACCGGCGTCGAAACAGAAAGACGGGACTTCCGGGGCAACACAGCGATCA
TGCATGCCTCTCGCGAGGCGAGAAACGATCGACATCTCAGCCCGCTGGCC
CTCGCGAGCGACTTCGGGAAGATTGAGGTGGTTCGTCAGCTAGTTGATAC
CGGCGTCGAAACAGAAAGACGGGACTTCCGGGGCAACACAGCGATCATGC
ATGCCTCTCGCGAGGGACACGCTCAAGTGGTGGTCGAGCTCCTAAAGGCG
TGCGCGGACCCGTCGATCACAAATAATGATGAGGTCTCGCCGCTCTCCCT
GGCGGTGAAGCATGGGCACGATGATGTCGTGGTATTGCTACTCGATGGAG
GGGGACACGCTCAAGTGGTGGTCGAGCTCCTAAAGGCGTGCGCGGACCCG
TCGATCACAAATAATGATGAGGTCTCGCCGCTCTCCCTGGCGGTGAAGCA
TGGGCACGATGATGTCGTGGTATTGCTACTCGATGGAGGGGCCAACGTAA
AGTCGGCAAACAAGAGTGGCTTCACGGCGCTGCTGAGGGCTGCGGAAGGC
GGGCGCACCGATATATACCAGGTGGGCATTCCTGACAGAGAATGTTATGC
CAACGTAAAGTCGGCAAACAAGAGTGGCTTCACGGCGCTGCTGAGGGCTG
CGGAAGGCGGGCGCACCGATATATACCAGGTGGGCATTCCTGACAGAGAA
TGTTAT
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