mRNA_H-elongata_contig67674.14374.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI) HSP 1 Score: 223 bits (568), Expect = 1.470e-64 Identity = 119/158 (75.32%), Postives = 125/158 (79.11%), Query Frame = 1
Query: 1 HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAMHEG---GRAPEAGGVRRGGDGGTPEVCDGFSLPRSAASPGTASPDRPLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNK 465
HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAM +G G A G GDGG E + P + G DRP T+RATERIG+LLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAV+EALM G LNSSMVWLLHYNK
Sbjct: 276 HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGTGGGGGTTAAGSFGAGDGGDDEASGDEARPSPSLPEGD---DRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVVEALMGGCLNSSMVWLLHYNK 430
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE) HSP 1 Score: 213 bits (543), Expect = 3.430e-61 Identity = 117/158 (74.05%), Postives = 123/158 (77.85%), Query Frame = 1
Query: 1 HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAMHEG---GRAPEAGGVRRGGDGGTPEVCDGFSLPRSAASPGTASPDRPLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNK 465
HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAM +G G GDGG E + P S + P DRP T+RATERIG+LLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETAR V+EALM G LNSSMVWLLHYNK
Sbjct: 329 HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAMRDGTGGXXXXXXXGSFGAGDGGDDEPSGDEARP-SPSLP--EDDDRPQTKRATERIGKLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARTVVEALMGGCLNSSMVWLLHYNK 483
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: A0A1E7FHH9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHH9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.310e-20 Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 10 FVKLCVDAGLPSNLVHCLRIMRVVEFESAMHEGGRAPEAGGVRRGGDGGTPEVCDGFSLPRSAASPGTASPDRPLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNKV 468
FV C++ LP N++HCLR++RV+E + A + A T P +P++ RAT ++ +LL TLC+D+S VGEQ++PHL GLL+L+ ++YP +G HV + A VI A L++S+VW LH K+
Sbjct: 91 FVMRCLENELPPNMIHCLRLLRVLELQHAAQ--------------------------TYKEYEAQGKTDQPIKPISSRATGKVSQLLCTLCTDQS--VGEQLRPHLFGLLALSGASYPRSGVHVAKAASQVIIAFAQYCLSNSLVWFLHDRKM 215
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: B5Y3B7_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3B7_PHATC) HSP 1 Score: 94.7 bits (234), Expect = 1.170e-19 Identity = 61/167 (36.53%), Postives = 88/167 (52.69%), Query Frame = 1
Query: 1 HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAMHEGGRAPEAGGVRRGG----DGGTPEVCDGFSLPRSAASP-GTASPD------RPLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNKV 468
H FV CV+ LP NLVHCLR++RV+E + A E A E+ + +G E + + +P G D +P+ AT+++ +LL LC D S VGEQ++PHL GL +L+ ++YPP+G HV A VI A LN +VW +H K+
Sbjct: 148 HEKFVLRCVENELPPNLVHCLRLLRVLELQHASGEVENAKESQVTKHDSVENEEGTADEAMEKEDQHQEEENPVGEIESDTSSAVLQPIGLVATQKVSKLLCQLCRDPS--VGEQLRPHLFGLFALSGASYPPSGLHVALAASDVIVAFSEHCLNRQLVWFIHDRKM 312
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: A0A7S3Q415_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q415_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.460e-17 Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 10 FVKLCVDAGLPSNLVHCLRIMRVVEFESAMHEGGRAPEAGGVRRGGDGGTPEVCDGFSLPRSAASPGTASPDRPLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLH 456
F+ C++ LP NL+HC+R++RVVE ++A + R +++ ATE++ +LL LC D A VGEQ++PHL GLL+L+ + YP NG HV A VI + G L++S+VW LH
Sbjct: 219 FILRCMENELPPNLIHCMRLLRVVELKAAHSQSAXXXXXXXXXX--------XXXXXXXXXXXXXXXXPQKVRSVSKAATEKVQKLLSLLCGD--ASVGEQLRPHLFGLLALSGARYPINGVHVARAASKVIVSFSKGCLSTSLVWFLH 357
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: A0A448Z2Q0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2Q0_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 6.420e-15 Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = 1
Query: 10 FVKLCVDAGLPSNLVHCLRIMRVVEFESAMHEGGRAPEAGGVRRGGDGGTPEVCDGFSLPRSAASPGTASPDRPLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNKV 468
++ C++ LP N++HCLR++RV+E + A G V + P +P++ RAT ++ +LL LC++ S VGEQ++ HL GLL+L+ ++YP +G HV A VI A L++S+V LH K+
Sbjct: 146 YLMRCLENELPPNMIHCLRLLRVLELQHAAETYKEYEAQGKVDQ--------------------------PIKPISSRATAKVSQLLCNLCTNPS--VGEQLRLHLFGLLALSGASYPSSGVHVARAASQVIIAFAQNCLSNSLVLFLHDRKM 270
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: A0A7S4S7R3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7R3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.400e-13 Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1
Query: 196 AASPGTASPDR-PLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNKV 468
A S T PD P++ AT ++ RLL LCSD S VGEQ++PHL GLL+L+ ++YPP+G H+ A +VI + L++S+VW LH K+
Sbjct: 75 AHSVSTPQPDPGPVSTLATAKVARLLCLLCSDPS--VGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKM 164
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: A0A7S1YSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSP2_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.810e-12 Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 244 ATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNKV 468
AT ++ RLL LCSD S VGEQ++PHL GLL+L+ ++YPP+G H+ A +VI + L++S+VW LH K+
Sbjct: 4 ATAKVTRLLCLLCSDPS--VGEQLRPHLFGLLALSGASYPPSGIHIASAASSVILSFSENCLSASLVWFLHDRKM 76
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Match: A0A7S1CTZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTZ4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 5.640e-12 Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 220 PDRPLTQRATERIGRLLVTLCSDKSAGVGEQIKPHLPGLLSLAVSAYPPNGAHVQETARAVIEALMAGSLNSSMVWLLHYNKV 468
P PL+ +A ++ +LL LCSD S VGEQ++PHL GLL+L+ ++YP +G H+ A VI A L++S+VW LH K+
Sbjct: 7 PASPLSTQAAAKVSKLLCLLCSDPS--VGEQLRPHLFGLLALSGASYPNSGVHIAAAASDVILAFSRSCLSASLVWFLHDRKM 87 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67674.14374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67674.14374.1 >prot_H-elongata_contig67674.14374.1 ID=prot_H-elongata_contig67674.14374.1|Name=mRNA_H-elongata_contig67674.14374.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp HPAFVKLCVDAGLPSNLVHCLRIMRVVEFESAMHEGGRAPEAGGVRRGGDback to top mRNA from alignment at H-elongata_contig67674:2609..3076+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67674.14374.1 ID=mRNA_H-elongata_contig67674.14374.1|Name=mRNA_H-elongata_contig67674.14374.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at H-elongata_contig67674:2609..3076+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67674:2609..3076+ >mRNA_H-elongata_contig67674.14374.1 ID=mRNA_H-elongata_contig67674.14374.1|Name=mRNA_H-elongata_contig67674.14374.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig67674:2609..3076+ (Himanthalia elongata Himel1 dioecious)back to top |