mRNA_H-elongata_contig118614.1437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118614.1437.1
Unique NamemRNA_H-elongata_contig118614.1437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: A0A105T3N9_9PSED (Uncharacterized protein n=5 Tax=Pseudomonas TaxID=286 RepID=A0A105T3N9_9PSED)

HSP 1 Score: 48.1 bits (113), Expect = 3.040e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVD 132
            ++Q + GDV + KG+  QG    G+ HRSP ++ G+RRL+LT+D
Sbjct:  170 IKQLNTGDVALLKGEKWQGNEGAGLIHRSPALQAGERRLILTLD 213
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BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: A0A418XJX3_9PSED (DUF1826 domain-containing protein n=1 Tax=Pseudomonas cavernicola TaxID=2320866 RepID=A0A418XJX3_9PSED)

HSP 1 Score: 48.1 bits (113), Expect = 3.090e-5
Identity = 19/44 (43.18%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVD 132
            ++Q + G+V +FKG+   G    G+ HRSP + +G+RRL+LT+D
Sbjct:  173 IQQLASGEVALFKGEKWLGNEGYGIVHRSPQLADGERRLILTLD 216
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BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: A0A4R6WYP9_9GAMM (Uncharacterized protein DUF1826 n=5 Tax=Marinomonas TaxID=28253 RepID=A0A4R6WYP9_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 4.300e-5
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVDI 135
            ++Q + GDV + KG+  +G    G+ HRSP +E+GQ+RL+LT+D+
Sbjct:  175 IQQITVGDVALLKGERWEGNEGRGIVHRSPGVEQGQQRLLLTLDM 219
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BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: A0A1A8TM83_9GAMM (Uncharacterized protein n=1 Tax=Marinomonas aquimarina TaxID=295068 RepID=A0A1A8TM83_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 4.300e-5
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVDI 135
            ++Q S GDV + KG+  +G    G+ HRSP +E GQ RL+LT+D+
Sbjct:  175 IQQISVGDVALLKGERWEGNEGCGIVHRSPGVENGQYRLLLTLDM 219
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BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: A0A6B3NXW9_9PSED (DUF1826 domain-containing protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A6B3NXW9_9PSED)

HSP 1 Score: 47.4 bits (111), Expect = 5.230e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVD 132
            VRQ +  DV + KG+   G    G+ HRSP + +GQRRL+LT+D
Sbjct:  153 VRQLASADVALLKGEKWLGNEGAGLVHRSPQLPDGQRRLILTLD 196
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BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: UPI001951B3FB (DUF1826 domain-containing protein n=1 Tax=Marinomonas ostreistagni TaxID=359209 RepID=UPI001951B3FB)

HSP 1 Score: 47.4 bits (111), Expect = 6.050e-5
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVDI 135
            ++Q S GDV + KG+  +G    G+ HRSP +E GQ+RL++T+D+
Sbjct:  178 IQQISAGDVALLKGERWEGNEGRGIVHRSPGVEAGQQRLLMTLDM 222
[Close]
BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: A0A089YLN3_9PSED (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A089YLN3_9PSED)

HSP 1 Score: 47.0 bits (110), Expect = 7.620e-5
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   19 GDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVD 132
            GDV +FKG+  +G    G+ HRSP +E G+RRL++T+D
Sbjct:  166 GDVALFKGERWEGNEGCGIIHRSPQVESGERRLIMTLD 203
[Close]
BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Match: A0A1U9RGF1_9GAMM (Uncharacterized protein n=3 Tax=Halomonas TaxID=2745 RepID=A0A1U9RGF1_9GAMM)

HSP 1 Score: 46.6 bits (109), Expect = 9.880e-5
Identity = 18/44 (40.91%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVD 132
            +++   GD+ + KG   +G    G+ HRSP +E+GQ+RL+LT+D
Sbjct:  151 IQRMQAGDIALIKGSGWEGCEERGLVHRSPSLEQGQKRLLLTID 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118614.1437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A105T3N9_9PSED3.040e-545.45Uncharacterized protein n=5 Tax=Pseudomonas TaxID=... [more]
A0A418XJX3_9PSED3.090e-543.18DUF1826 domain-containing protein n=1 Tax=Pseudomo... [more]
A0A4R6WYP9_9GAMM4.300e-544.44Uncharacterized protein DUF1826 n=5 Tax=Marinomona... [more]
A0A1A8TM83_9GAMM4.300e-546.67Uncharacterized protein n=1 Tax=Marinomonas aquima... [more]
A0A6B3NXW9_9PSED5.230e-547.73DUF1826 domain-containing protein n=2 Tax=Pseudomo... [more]
UPI001951B3FB6.050e-544.44DUF1826 domain-containing protein n=1 Tax=Marinomo... [more]
A0A089YLN3_9PSED7.620e-550.00Uncharacterized protein n=2 Tax=Pseudomonas TaxID=... [more]
A0A1U9RGF1_9GAMM9.880e-540.91Uncharacterized protein n=3 Tax=Halomonas TaxID=27... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118614contigH-elongata_contig118614:679..813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.439983-CDS-H-elongata_contig118614:678..8131622929693.439983-CDS-H-elongata_contig118614:678..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118614 679..813 -
1691679121.3410432-CDS-H-elongata_contig118614:678..8131691679121.3410432-CDS-H-elongata_contig118614:678..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118614 679..813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118614.1437.1prot_H-elongata_contig118614.1437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118614 679..813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118614.1437.1

>prot_H-elongata_contig118614.1437.1 ID=prot_H-elongata_contig118614.1437.1|Name=mRNA_H-elongata_contig118614.1437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
VRQASEGDVLIFKGQPPQGAGSIGVAHRSPDMEEGQRRLVLTVDI
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mRNA from alignment at H-elongata_contig118614:679..813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118614.1437.1 ID=mRNA_H-elongata_contig118614.1437.1|Name=mRNA_H-elongata_contig118614.1437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig118614:679..813- (Himanthalia elongata Himel1 dioecious)
GTTCGACAAGCTAGCGAAGGCGACGTACTCATCTTCAAGGGGCAGCCGCC
GCAGGGCGCAGGATCAATCGGCGTTGCACACCGCTCCCCGGACATGGAGG
AAGGCCAAAGGAGACTCGTGCTCACAGTTGACATC
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Coding sequence (CDS) from alignment at H-elongata_contig118614:679..813-

>mRNA_H-elongata_contig118614.1437.1 ID=mRNA_H-elongata_contig118614.1437.1|Name=mRNA_H-elongata_contig118614.1437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig118614:679..813- (Himanthalia elongata Himel1 dioecious)
GTTCGACAAGCTAGCGAAGGCGACGTACTCATCTTCAAGGGGCAGCCGCC
GCAGGGCGCAGGATCAATCGGCGTTGCACACCGCTCCCCGGACATGGAGG
AAGGCCAAAGGAGACTCGTGCTCACAGTTGACATCGTTCGACAAGCTAGC
GAAGGCGACGTACTCATCTTCAAGGGGCAGCCGCCGCAGGGCGCAGGATC
AATCGGCGTTGCACACCGCTCCCCGGACATGGAGGAAGGCCAAAGGAGAC
TCGTGCTCACAGTTGACATC
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