mRNA_H-elongata_contig67589.14368.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67589.14368.1
Unique NamemRNA_H-elongata_contig67589.14368.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: D8LL75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL75_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 2.830e-76
Identity = 108/128 (84.38%), Postives = 120/128 (93.75%), Query Frame = 1
Query:   13 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWDE 396
            Q+LL++ FEFDV+YTSMLKRAIKTAWVVLDEL+QQHVPV  DWHLNERCYGALVGREKKECVR +GA+QVK WRRS+D+PPPPID+SSKLWPGNNPRYKFL++DGES VPLHESLKDVM RSS YWDE
Sbjct:   61 QLLLSQEFEFDVIYTSMLKRAIKTAWVVLDELNQQHVPVTTDWHLNERCYGALVGREKKECVRSFGAEQVKIWRRSWDIPPPPIDKSSKLWPGNNPRYKFLMQDGESQVPLHESLKDVMSRSSAYWDE 188          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: A0A6H5L2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H5_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 5.640e-75
Identity = 109/128 (85.16%), Postives = 121/128 (94.53%), Query Frame = 1
Query:   13 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWDE 396
            Q+LL++ FEFDVVYTSMLKRAIKTAWVVLDEL+QQHVPV ADWHLNERCYGALVGREKKECVR +GA+QVK WRRS+D+PPPPID+SSKLWPGNNPRYKFL+K+GES VP+HESLKDVM RSS YWDE
Sbjct:  170 QLLLSQEFEFDVVYTSMLKRAIKTAWVVLDELNQQHVPVTADWHLNERCYGALVGREKKECVRSFGAEQVKIWRRSWDIPPPPIDKSSKLWPGNNPRYKFLMKNGESQVPVHESLKDVMSRSSAYWDE 297          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: A0A836CGX1_9STRA (Histidine phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX1_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.090e-53
Identity = 84/127 (66.14%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   13 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWD 393
            QVLLA G+EFD++YTS+LKR+IKTAWVV+DEL   HVPV+ DW LNERCYGALVGR KKECVR YG  QVK WRRS+DV PPPI   S LWPGNN +Y FL +   +L+P  ESL+D   RS   WD
Sbjct:   48 QVLLAAGYEFDIIYTSLLKRSIKTAWVVMDELGLHHVPVVTDWRLNERCYGALVGRNKKECVRVYGEDQVKLWRRSFDVRPPPISEDSSLWPGNNRKYDFLER---ALIPRTESLQDTQARSVDCWD 171          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: A0A4R5JU76_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=3 Tax=Candidatus Cloacimonetes TaxID=456828 RepID=A0A4R5JU76_9BACT)

HSP 1 Score: 146 bits (368), Expect = 3.060e-41
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   19 LLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWDE 396
            LL  GF+FDV +TS+LKRAI+T W++LDE+ + ++P+  DW LNER YGAL G  K E    YG +QVK WRRSYDVPPPP+D+    +PG +PRY  L  +    +P+ ESLKD  KR+  +W+E
Sbjct:   43 LLEAGFDFDVCWTSVLKRAIRTLWIILDEMDRMYLPIHNDWRLNERHYGALQGLNKAETAAKYGEEQVKLWRRSYDVPPPPLDKDDPRYPGKDPRYAHLSPEQ---IPVGESLKDTCKRTMPFWEE 165          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: A0A2N2P610_9CHLR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-10 TaxID=2013724 RepID=A0A2N2P610_9CHLR)

HSP 1 Score: 143 bits (360), Expect = 4.770e-40
Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   13 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWDE 396
            +VL  EG+ FD+ YTS+LKRAI+T W+VLDEL Q  VPVI DW LNER YGAL G  K E    YG  QVK WRRSYD+ PPP+++S   +PG++PRYK L    E  +P  E LKD + R    W++
Sbjct:   41 EVLKKEGYVFDIAYTSVLKRAIRTLWIVLDELDQMWVPVIRDWRLNERHYGALQGLNKAETAAKYGEDQVKIWRRSYDITPPPLEKSDPRFPGHDPRYKSL---SEEQLPATECLKDTVARFLPMWND 165          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: A0A7V2TTS0_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2TTS0_9BACT)

HSP 1 Score: 142 bits (358), Expect = 9.540e-40
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   28 EGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWDE 396
            EGFEFD+VYTS+LKRAI+T  +V+DEL Q  VPVI  W LNER YGAL G  K E    YG +QVK WRRSYD+PPP ++ S   WPG++ RY+ L ++    +PL ESLKD + R   YW++
Sbjct:   46 EGFEFDLVYTSVLKRAIRTMQIVMDELDQMWVPVIRHWRLNERHYGALQGLNKAETAAKYGEEQVKIWRRSYDIPPPALEPSDPRWPGHDRRYRGLSREE---LPLTESLKDTVARFVPYWEQ 165          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: I0ANS2_IGNAJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=4 Tax=Ignavibacteriaceae TaxID=795749 RepID=I0ANS2_IGNAJ)

HSP 1 Score: 142 bits (358), Expect = 9.540e-40
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   13 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWD 393
            +VL +EG+ FD+ YTS+LKRAI+T W+VLDE+    +PVI  W LNER YGAL G  K E  + YG +QVK WRRSYD+ PP +++S   +PG++PRYK L    ES +PL E LKD + R   YW+
Sbjct:   41 EVLKSEGYTFDIAYTSVLKRAIRTLWIVLDEMDLMWIPVIRHWRLNERHYGALQGLNKAETAKKYGEEQVKIWRRSYDIQPPALEKSDPRYPGHDPRYKDL---SESELPLTECLKDTVARFVPYWE 164          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: A0A1V6F903_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=2 Tax=unclassified Candidatus Cloacimonetes TaxID=1047068 RepID=A0A1V6F903_9BACT)

HSP 1 Score: 142 bits (358), Expect = 9.790e-40
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   28 EGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWDE 396
            EGF FD  +TS LKRAI+T W+VLDE+   H+PV  DW LNER YGAL G  K E    YG +QV  WRRSYDVPPP +++S   WPG+ PRY  L + G+  +PL ESLKD  KR+  +W+E
Sbjct:   46 EGFTFDEAWTSTLKRAIRTLWIVLDEMDLMHLPVHNDWRLNERHYGALQGLNKAETATKYGEEQVMLWRRSYDVPPPSLEKSDPRWPGHEPRYANL-QPGD--IPLAESLKDTCKRTLPFWEE 165          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: F3QHD3_9BURK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=8 Tax=Proteobacteria TaxID=1224 RepID=F3QHD3_9BURK)

HSP 1 Score: 142 bits (358), Expect = 9.790e-40
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 1
Query:   13 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWD 393
            ++L AEG+EFD+ YTS+LKRAI+T W+ LD+L   ++PVI DW LNER YGAL G  KKE   ++G +QV  WRRSYDVPPP +++ + +WPG +PRYK +  +    +PL E L D + R   YW+
Sbjct:   41 EILKAEGYEFDLCYTSVLKRAIRTLWITLDKLDAMYLPVIHDWRLNERHYGALQGLNKKETAANFGDEQVLIWRRSYDVPPPALEKDNPMWPGFDPRYKHVPAEE---LPLTECLADTVARVVPYWE 164          
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Match: A0A1C7HIQ3_9BURK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A1C7HIQ3_9BURK)

HSP 1 Score: 141 bits (355), Expect = 2.770e-39
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   13 QVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLNERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNPRYKFLIKDGESLVPLHESLKDVMKRSSTYWD 393
            Q+L  +GF FD+ YTS+LKRAI+T  + LDEL Q ++PVI DW LNER YGAL G  KKE    +G +QV  WRRSYDVPPP + + S +WP N  RY+  ++D E L+PL E LKD +KR   YW+
Sbjct:   41 QLLKKQGFVFDLCYTSVLKRAIRTLCIALDELDQLYLPVIKDWRLNERHYGALQGLNKKETAEKFGNEQVMIWRRSYDVPPPALSKESPMWPANQSRYR--LEDPE-LMPLTECLKDTVKRVVPYWE 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67589.14368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL75_ECTSI2.830e-7684.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H5_9PHAE5.640e-7585.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGX1_9STRA1.090e-5366.14Histidine phosphatase superfamily n=1 Tax=Tribonem... [more]
A0A4R5JU76_9BACT3.060e-4152.382,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A2N2P610_9CHLR4.770e-4053.912,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A7V2TTS0_9BACT9.540e-4055.282,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
I0ANS2_IGNAJ9.540e-4052.762,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A1V6F903_9BACT9.790e-4055.282,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
F3QHD3_9BURK9.790e-4051.182,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A1C7HIQ3_9BURK2.770e-3954.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67589contigH-elongata_contig67589:1356..2428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue8.4e-61
Seed eggNOG ortholog2880.D8LL75
KEGG rclassRC00536
KEGG koko:K01834
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG ModuleM00001,M00002,M00003
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC5.4.2.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-24_002670.1
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931067.1936514-CDS-H-elongata_contig67589:1355..15741622931067.1936514-CDS-H-elongata_contig67589:1355..1574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67589 1356..1574 +
1691679684.3008938-CDS-H-elongata_contig67589:1355..15741691679684.3008938-CDS-H-elongata_contig67589:1355..1574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67589 1356..1574 +
1622931067.213197-CDS-H-elongata_contig67589:2251..24281622931067.213197-CDS-H-elongata_contig67589:2251..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67589 2252..2428 +
1691679684.311765-CDS-H-elongata_contig67589:2251..24281691679684.311765-CDS-H-elongata_contig67589:2251..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67589 2252..2428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67589.14368.1prot_H-elongata_contig67589.14368.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67589 1356..2428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67589.14368.1

>prot_H-elongata_contig67589.14368.1 ID=prot_H-elongata_contig67589.14368.1|Name=mRNA_H-elongata_contig67589.14368.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
HLLVQVLLAEGFEFDVVYTSMLKRAIKTAWVVLDELSQQHVPVIADWHLN
ERCYGALVGREKKECVRHYGAQQVKTWRRSYDVPPPPIDRSSKLWPGNNP
RYKFLIKDGESLVPLHESLKDVMKRSSTYWDE
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mRNA from alignment at H-elongata_contig67589:1356..2428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67589.14368.1 ID=mRNA_H-elongata_contig67589.14368.1|Name=mRNA_H-elongata_contig67589.14368.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1073bp|location=Sequence derived from alignment at H-elongata_contig67589:1356..2428+ (Himanthalia elongata Himel1 dioecious)
CATCTTCTCGTCCAGGTCCTTCTAGCGGAGGGGTTCGAGTTCGATGTCGT GTACACCTCCATGCTCAAGCGAGCGATCAAGACGGCGTGGGTGGTCCTCG ACGAGCTCAGCCAGCAGCACGTACCCGTGATCGCGGACTGGCATCTGAAC GAGAGATGCTACGGCGCGCTCGTCGGAAGGGAGAAGAAAGAGTGCGTGCG GCACTATGGGGCGCAACAGGTAGGGGGGGGGGGTTCCGTGAATGTTGGCG ATGGCCTGCGCATCGCCTCTTAACACTTTCTCTTTTTCTCTCTCGCTCAT TGTTTCTTTTGACAAAATACCACGTATCTATATTTTTCATCACCGACAAT TAGTCATCGGAAATGATTTTACTCCGTTTTTTGTCTCGTTACAAATATAT TCTATTCATAATATTTTATTTCAATATTACAACGTACGGAAGTGTTAGGG GGGTTTTGCGGGGGGGGGAGAGGGGGTGGTGAGGGAGGGGAGATAATACA TAATATCTTCGTCGCCTGAGTAGCCTTAATGGTAACTGCCTAAACCAAGA CGGTGTAAGTCGGGAGTTCAATGCTGCGAAGGATTATTAATCGGGAGAGC GGGAAGTATACAAGGTTCAACTACATGTCATACACTGTACTGTACCGAAG ATTGGCGAGGCGTAGGAGTGCCGAGCTCGCGTCGCGATAAACATAAGTAG GCGTTAACTAACCGGTGAGAGAAGGGGTATATAGAATGCGCTTTCGAACA ATAGTAGAGGTGGGACATAGTAAAGGTACCGTGGCACGTTAAAAGGTATA CCCCATCGGGCAGAAAGCGAGAGAGAAAGCAAACCAACATTTTATTGCAT GAATGGCCCCACTTGTGATCTTGTTTCCTTCGTGCGCTCGATACAGGTGA AGACCTGGAGGAGGTCGTACGACGTGCCTCCGCCACCGATTGACCGCTCA AGCAAGCTCTGGCCCGGGAACAACCCTCGGTACAAGTTCCTGATCAAAGA CGGGGAGAGCCTCGTCCCCCTGCACGAGTCTCTCAAGGACGTCATGAAGA GGTCGTCAACCTACTGGGACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig67589:1356..2428+

>mRNA_H-elongata_contig67589.14368.1 ID=mRNA_H-elongata_contig67589.14368.1|Name=mRNA_H-elongata_contig67589.14368.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig67589:1356..2428+ (Himanthalia elongata Himel1 dioecious)
CATCTTCTCGTCCAGGTCCTTCTAGCGGAGGGGTTCGAGTTCGATGTCGT
GTACACCTCCATGCTCAAGCGAGCGATCAAGACGGCGTGGGTGGTCCTCG
ACGAGCTCAGCCAGCAGCACGTACCCGTGATCGCGGACTGGCATCTGAAC
GAGAGATGCTACGGCGCGCTCGTCGGAAGGGAGAAGAAAGAGTGCGTGCG
GCACTATGGGGCGCAACAGCATCTTCTCGTCCAGGTCCTTCTAGCGGAGG
GGTTCGAGTTCGATGTCGTGTACACCTCCATGCTCAAGCGAGCGATCAAG
ACGGCGTGGGTGGTCCTCGACGAGCTCAGCCAGCAGCACGTACCCGTGAT
CGCGGACTGGCATCTGAACGAGAGATGCTACGGCGCGCTCGTCGGAAGGG
AGAAGAAAGAGTGCGTGCGGCACTATGGGGCGCAACAGGTGAAGACCTGG
AGGAGGTCGTACGACGTGCCTCCGCCACCGATTGACCGCTCAAGCAAGCT
CTGGCCCGGGAACAACCCTCGGTACAAGTTCCTGATCAAAGACGGGGAGA
GCCTCGTCCCCCTGCACGAGTCTCTCAAGGACGTCATGAAGAGGTCGTCA
ACCTACTGGGACGAGGTGAAGACCTGGAGGAGGTCGTACGACGTGCCTCC
GCCACCGATTGACCGCTCAAGCAAGCTCTGGCCCGGGAACAACCCTCGGT
ACAAGTTCCTGATCAAAGACGGGGAGAGCCTCGTCCCCCTGCACGAGTCT
CTCAAGGACGTCATGAAGAGGTCGTCAACCTACTGGGACGAG
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