mRNA_H-elongata_contig67510.14361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67510.14361.1
Unique NamemRNA_H-elongata_contig67510.14361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67510.14361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67510contigH-elongata_contig67510:1665..3062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size272
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67510.14361.1prot_H-elongata_contig67510.14361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67510 1734..3062 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.536308-UTR-H-elongata_contig67510:1664..17331622931066.536308-UTR-H-elongata_contig67510:1664..1733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67510 1665..1733 +
1691679684.0146227-UTR-H-elongata_contig67510:1664..17331691679684.0146227-UTR-H-elongata_contig67510:1664..1733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67510 1665..1733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.5550344-CDS-H-elongata_contig67510:1733..18231622931066.5550344-CDS-H-elongata_contig67510:1733..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67510 1734..1823 +
1691679684.0224268-CDS-H-elongata_contig67510:1733..18231691679684.0224268-CDS-H-elongata_contig67510:1733..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67510 1734..1823 +
1622931066.57158-CDS-H-elongata_contig67510:2951..30621622931066.57158-CDS-H-elongata_contig67510:2951..3062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67510 2952..3062 +
1691679684.03025-CDS-H-elongata_contig67510:2951..30621691679684.03025-CDS-H-elongata_contig67510:2951..3062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67510 2952..3062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67510.14361.1

>prot_H-elongata_contig67510.14361.1 ID=prot_H-elongata_contig67510.14361.1|Name=mRNA_H-elongata_contig67510.14361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MAPLDLFAGLATIFLAAPSGAFVVPGPARGVSLRNALVLRDHGDCQYGTR
TPLKLSRAAPSFSQEAG
back to top

mRNA from alignment at H-elongata_contig67510:1665..3062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67510.14361.1 ID=mRNA_H-elongata_contig67510.14361.1|Name=mRNA_H-elongata_contig67510.14361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-elongata_contig67510:1665..3062+ (Himanthalia elongata Himel1 dioecious)
GTTTTAGATGACATCAAGAAGAGCTAACAAAGCCTAGGCAGAGTAACTTT
TAAATAAAAAAGCTACCGTATGGCGCCTCTTGATTTATTCGCAGGCCTGG
CTACAATCTTCTTGGCTGCACCTAGCGGTGCATTCGTGGTTCCTGGCCCA
GCTCGAGGGGTGGGTCTGAAATCGTGACTCATAATGTTTAGCATGCCAGT
ATGTCACTACAACAACAGCAAGTAGACACCATGCAGTCCTATAATTACGA
GTTGGGTTTCTGAGCGTGCCTAGCTTCGCGTCGAAACTATAGCATATTAG
TGCCATAGCCCGGCAGGTTCTCTCAGCCCTTTATCGTGAACATGATCGCA
TGGCGTTTTCCAAATGCAGTCACCGCAAATAAATGTTGAAATAAGACTGA
AGGTTGGGTAAAAGTACATGTGTGGAGATTTTGTTCTCAAAGGTAGTAGT
AATGCACACATTCGAACCTGGCGATAGTTGGTTCCCAGGACTGCACCTAC
GCTGCGCTTCGTCTGTTTTTCCTGCCTGACCTACCTCGACGATTGATATC
TAGGTACCCGGCAGCAATTTTCGTTGCTGTGATGTGAAGCTATTGTAAAG
GTTCGTGCTCGACGCTCCCATGATTGGATGATGATGTCGCTTATTGGGTC
GGAAAGCAAGGCAAACAACCTGATCCTTGAACGCGCCTTACATGCAGTTC
TCGACTAACGGACAGTCAGAGCAGGGCTTCATGAACACGCAGTAGTTGTA
AGTTTCACTACAAGAATAAAGCTCGTAGCGCCAGGGCTAACATTTTTTTT
TTTAAAGCCTTGAACTCATTCCAACCCTCCGAACATCCACACCTTCTTAG
CACCATGAGACGTGCAGTCCAGGGGACCAACTCTCGTCAGGTTCGAATGT
GTACTTGTTGGGTTGGAATGAGTTCATGTTCTTTTTTAGACCAAATTCTC
AGGCGCTAACGGGGACAGAGGAAAATTATTTTCCCTGTTCAGCTGACCAC
GAGCAGAAGGCACAACCAAATCAGGTTGATCTTCTGCTAAATGTGCGACC
AACAACAACAGTAAAGCAAAAAGCGAAATCTGGCGACCACGTGAAAGTCA
GTCAGGAGGCAACCAAAATCCAGTTGATCTATCTATATCTGATGACCACC
CATGAAACTGCGGTAACGATAGAAGAGCTATGCGTGTGGGAGGTTGGAGG
GCTTACAGTCATTTTTTACTTTTTTATATATGTAGTTCATACTCCATTCC
CTCATTCCAGTCTGCTGCTTGCGACCGTTTGTCTCAGGTGTCGTTGAGGA
ACGCTCTGGTGCTTCGTGATCATGGTGATTGTCAATATGGTACCCGTACC
CCACTTAAACTCTCGAGGGCCGCACCATCATTCTCTCAAGAAGCCGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig67510:1665..3062+

>mRNA_H-elongata_contig67510.14361.1 ID=mRNA_H-elongata_contig67510.14361.1|Name=mRNA_H-elongata_contig67510.14361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig67510:1665..3062+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCCTCTTGATTTATTCGCAGGCCTGGCTACAATCTTCTTGGCTGC
ACCTAGCGGTGCATTCGTGGTTCCTGGCCCAGCTCGAGGGATGGCGCCTC
TTGATTTATTCGCAGGCCTGGCTACAATCTTCTTGGCTGCACCTAGCGGT
GCATTCGTGGTTCCTGGCCCAGCTCGAGGGGTGTCGTTGAGGAACGCTCT
GGTGCTTCGTGATCATGGTGATTGTCAATATGGTACCCGTACCCCACTTA
AACTCTCGAGGGCCGCACCATCATTCTCTCAAGAAGCCGGGGTGTCGTTG
AGGAACGCTCTGGTGCTTCGTGATCATGGTGATTGTCAATATGGTACCCG
TACCCCACTTAAACTCTCGAGGGCCGCACCATCATTCTCTCAAGAAGCCG
GG
back to top