mRNA_H-elongata_contig67498.14360.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67498.14360.1
Unique NamemRNA_H-elongata_contig67498.14360.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.800e-29
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 LLSFWAGEGRALYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            LL FWAGEG+ALYPNMAR ARVLLSVPAS+ VLERDFSTAGRLITG+RSRL+  YVEM LFLNGN+EYI
Sbjct:  712 LLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYI 780          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-13
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 LLSFWAGEGRALYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            +L +W     A YP +ARVARV+   PASA VLERDFS AGR++T SRS +  +YVEM +FL+GN + I
Sbjct:  607 VLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLI 674          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.630e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   34 LYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRL-AGEYVEMTLFLNGNKEYI 207
            +YP +ARVARV+   PASA VLERDFS AGR++T SR  + +  YVEM LFL+GN + I
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLI 63          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.510e-11
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 LLSFWAGEGRALYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            +L +W   GR LYP +AR ARV+   PASA VLERDF+ A  ++  SRS    +YVEM LFL+GN + I
Sbjct:  547 VLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLI 614          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.620e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 LLSFWAGEG-RALYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            +LSFW  +  +  +  +  VARVL S+P+S+  +ERDF TAGR++T  RS LA   V+MT FLN N+ Y+
Sbjct:   23 VLSFWKRQQEQGNFRLLPLVARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYV 92          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: A0A0W8BWD8_PHYNI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8BWD8_PHYNI)

HSP 1 Score: 60.5 bits (145), Expect = 4.400e-10
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 LLSFWAGEGRA-LYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            +L FW  + +A  Y  +  VARVL ++  S+T +ERDF  AG+L+T  R  +A + VEM+ FLN N++++
Sbjct:    1 MLEFWMRQAKAGAYKYLPLVARVLFAISTSSTQIERDFGIAGQLVTPQRGSIAPQNVEMSAFLNCNRQFV 70          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 61.6 bits (148), Expect = 9.520e-10
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 LLSFWAGEGRALYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 195
            LL++W  E   ++P++AR+AR +LS+PA++   ERDFSTAG +I+  RS+L+ E V+  LFL+ N
Sbjct:  170 LLNWWK-EHSEMFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 4.960e-9
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   55 VARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            VARV+ S+P+S+  +ERDF TAGR++T  R+ LA   V+MT FLN N+ Y+
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYV 60          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: A0A080YX20_PHYPR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080YX20_PHYPR)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 LLSFWAGEGRA-LYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            +L FW  +  +  Y  + +V R+L ++P S+  +ERDF TAG+L+T  R  +A   V+M+ FLN N++++
Sbjct:   83 ILEFWQRQAASNTYTFLPQVVRILFAIPTSSAQIERDFGTAGQLVTPQRGSIAPYNVDMSAFLNCNRQFV 152          
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Match: V9EPB2_PHYPR (Dimer_Tnp_hAT domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EPB2_PHYPR)

HSP 1 Score: 58.2 bits (139), Expect = 1.340e-8
Identity = 27/70 (38.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 LLSFWAGEGRA-LYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKEYI 207
            +L FW  + +   Y  +  VARVL ++ +S+T +ERDF  AG+L+T  R  +A + VEM+ FLN +++++
Sbjct:   81 MLEFWMRQAKTGAYKYLPLVARVLFAISSSSTQIERDFGIAGQLVTSQRGSIAPQNVEMSAFLNCDRQFV 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67498.14360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.800e-2984.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE1.200e-1355.07Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE8.630e-1359.32Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI4.510e-1152.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA6.620e-1147.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A0W8BWD8_PHYNI4.400e-1041.43Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ph... [more]
UPI0019661A939.520e-1047.69zinc finger BED domain-containing protein DAYSLEEP... [more]
H3GTQ6_PHYRM4.960e-952.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A080YX20_PHYPR1.130e-837.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
V9EPB2_PHYPR1.340e-838.57Dimer_Tnp_hAT domain-containing protein n=6 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67498contigH-elongata_contig67498:55..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.4645808-CDS-H-elongata_contig67498:54..2611622931066.4645808-CDS-H-elongata_contig67498:54..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67498 55..261 -
1691679684.0050156-CDS-H-elongata_contig67498:54..2611691679684.0050156-CDS-H-elongata_contig67498:54..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67498 55..261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67498.14360.1prot_H-elongata_contig67498.14360.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67498 55..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67498.14360.1

>prot_H-elongata_contig67498.14360.1 ID=prot_H-elongata_contig67498.14360.1|Name=mRNA_H-elongata_contig67498.14360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
LLSFWAGEGRALYPNMARVARVLLSVPASATVLERDFSTAGRLITGSRSR
LAGEYVEMTLFLNGNKEYI
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mRNA from alignment at H-elongata_contig67498:55..261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67498.14360.1 ID=mRNA_H-elongata_contig67498.14360.1|Name=mRNA_H-elongata_contig67498.14360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig67498:55..261- (Himanthalia elongata Himel1 dioecious)
CTGCTTTCGTTCTGGGCCGGGGAGGGGCGGGCGCTCTACCCTAACATGGC GCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTACCGTCCTCG AGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCGTAGCCGG CTGGCGGGCGAATACGTTGAGATGACGCTGTTTCTCAACGGCAACAAGGA GTATATC
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Coding sequence (CDS) from alignment at H-elongata_contig67498:55..261-

>mRNA_H-elongata_contig67498.14360.1 ID=mRNA_H-elongata_contig67498.14360.1|Name=mRNA_H-elongata_contig67498.14360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig67498:55..261- (Himanthalia elongata Himel1 dioecious)
CTGCTTTCGTTCTGGGCCGGGGAGGGGCGGGCGCTCTACCCTAACATGGC
GCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTACCGTCCTCG
AGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCGTAGCCGG
CTGGCGGGCGAATACGTTGAGATGACGCTGTTTCTCAACGGCAACAAGGA
GTATATCCTGCTTTCGTTCTGGGCCGGGGAGGGGCGGGCGCTCTACCCTA
ACATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTACC
GTCCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCG
TAGCCGGCTGGCGGGCGAATACGTTGAGATGACGCTGTTTCTCAACGGCA
ACAAGGAGTATATC
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