prot_H-elongata_contig67413.14346.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67413.14346.1
Unique Nameprot_H-elongata_contig67413.14346.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length235
Homology
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BLAST of mRNA_H-elongata_contig67413.14346.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-10
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 0 
Query:   40 SAGDSTDGA--GGVLDCLGDFVGGGHALCRSRSRSAIGAAPDIFHLDSE-------------------PSFSMSHRRARFPSRERSLILEFV 110
            SAG +T     GGV+D +  FVGGGH LCR+RS SA G   DIFHL++                    P+   +HRRARFPSRERS++L+FV
Sbjct:  738 SAGAATGAGAGGGVVDSV--FVGGGHVLCRTRSSSAPGPVSDIFHLEAADTPAATGAAAAAPEAPAAAPTLLRNHRRARFPSRERSVLLDFV 827
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BLAST of mRNA_H-elongata_contig67413.14346.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-9
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 0 
Query:   51 VLDCLGDFVGGGHALCRSRSRSAIGAAPDIFHLDSE--------------------PSFSMSHRRARFPSRERSLILEFV-------REASGSAH 118
            V+D +  FVGGGH LCR+RS SA G   DIFHL++                     P+    HRRARFPSRER+++L+FV       R+ S  AH
Sbjct:  255 VVDSV--FVGGGHVLCRARSSSATGPVSDIFHLEAADTPAAAGAAXXXXXXXXXXXPTLLRKHRRARFPSRERAVLLDFVPAAMPLARDPSAQAH 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67413.14346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H8_9PHAE1.090e-1046.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB4_ECTSI2.740e-942.11Cell surface protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67413contigH-elongata_contig67413:1491..2630 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67413.14346.1mRNA_H-elongata_contig67413.14346.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67413 1489..2630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67413.14346.1 ID=prot_H-elongata_contig67413.14346.1|Name=mRNA_H-elongata_contig67413.14346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
DASPLKKTGRSWHGGSTRNRRAVSGGGSRLEFGSPPRRRSAGDSTDGAGG
VLDCLGDFVGGGHALCRSRSRSAIGAAPDIFHLDSEPSFSMSHRRARFPS
RERSLILEFVREASGSAHYYPHHHHYPQQSSATGESGGYGHRATSSAAAS
GTGTETGAESSTPSSPMVGRLASCIRRANSSRRASSHRASSHRAASNRAA
SHRAASHRAASHRVDNNRRNSSISRRYASGSTLAG
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