mRNA_H-elongata_contig67413.14346.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67413.14346.1
Unique NamemRNA_H-elongata_contig67413.14346.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67413.14346.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-10
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:  118 SAGDSTDGA--GGVLDCLGDFVGGGHALCRSRSRSAIGAAPDIFHLDSE-------------------PSFSMSHRRARFPSRERSLILEFV 330
            SAG +T     GGV+D +  FVGGGH LCR+RS SA G   DIFHL++                    P+   +HRRARFPSRERS++L+FV
Sbjct:  738 SAGAATGAGAGGGVVDSV--FVGGGHVLCRTRSSSAPGPVSDIFHLEAADTPAATGAAAAAPEAPAAAPTLLRNHRRARFPSRERSVLLDFV 827
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BLAST of mRNA_H-elongata_contig67413.14346.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-9
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:  151 VLDCLGDFVGGGHALCRSRSRSAIGAAPDIFHLDSE--------------------PSFSMSHRRARFPSRERSLILEFV-------REASGSAH 354
            V+D +  FVGGGH LCR+RS SA G   DIFHL++                     P+    HRRARFPSRER+++L+FV       R+ S  AH
Sbjct:  255 VVDSV--FVGGGHVLCRARSSSATGPVSDIFHLEAADTPAAAGAAXXXXXXXXXXXPTLLRKHRRARFPSRERAVLLDFVPAAMPLARDPSAQAH 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67413.14346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H8_9PHAE1.090e-1046.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB4_ECTSI2.740e-942.11Cell surface protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67413contigH-elongata_contig67413:1489..2630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size708
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.7422314-CDS-H-elongata_contig67413:1490..19831622931064.7422314-CDS-H-elongata_contig67413:1490..1983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67413 1491..1983 -
1691679683.4521575-CDS-H-elongata_contig67413:1490..19831691679683.4521575-CDS-H-elongata_contig67413:1490..1983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67413 1491..1983 -
1622931064.7571332-CDS-H-elongata_contig67413:2418..26301622931064.7571332-CDS-H-elongata_contig67413:2418..2630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67413 2419..2630 -
1691679683.462057-CDS-H-elongata_contig67413:2418..26301691679683.462057-CDS-H-elongata_contig67413:2418..2630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67413 2419..2630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67413.14346.1prot_H-elongata_contig67413.14346.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67413 1491..2630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67413.14346.1

>prot_H-elongata_contig67413.14346.1 ID=prot_H-elongata_contig67413.14346.1|Name=mRNA_H-elongata_contig67413.14346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
DASPLKKTGRSWHGGSTRNRRAVSGGGSRLEFGSPPRRRSAGDSTDGAGG
VLDCLGDFVGGGHALCRSRSRSAIGAAPDIFHLDSEPSFSMSHRRARFPS
RERSLILEFVREASGSAHYYPHHHHYPQQSSATGESGGYGHRATSSAAAS
GTGTETGAESSTPSSPMVGRLASCIRRANSSRRASSHRASSHRAASNRAA
SHRAASHRAASHRVDNNRRNSSISRRYASGSTLAG
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mRNA from alignment at H-elongata_contig67413:1489..2630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67413.14346.1 ID=mRNA_H-elongata_contig67413.14346.1|Name=mRNA_H-elongata_contig67413.14346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1142bp|location=Sequence derived from alignment at H-elongata_contig67413:1489..2630- (Himanthalia elongata Himel1 dioecious)
GACGCCTCGCCCTTAAAGAAAACGGGGAGGTCTTGGCACGGCGGGTCGAC
GAGGAACCGCCGGGCCGTTAGCGGTGGTGGAAGCAGGTTGGAATTTGGTT
CTCCGCCCCGGCGGCGCTCCGCGGGCGACTCTACCGACGGCGCGGGCGGT
GTTTTGGATTGTCTTGGAGATTTTGTCGGTGGCGGACATGCTCTGTGCCG
CTCTAGATCAAGGTATGTGTGTGTGTGTGTGGAAGTGTTTGGTGCGGCAA
GACGGCATCGAAGCTTCCGTCTTGACATTATTATTGTCGTTGGCTGATTA
TTTTCCTTTTTCCCGTGCGCGTCAGTCAGCACAAGCCTCTTTCCCCTTTG
CATCTTTCCCGTCCCAGCGACAACATTAATCCATTATCATGGTTCCGTAA
TTAAATGTGGAGGGCAGTGTGCGTTGTTAAACTGGTGGTGCGTCACGCGT
AGACTGTATGCATTTGCGTGTATATTTCATCTGGGATGTTATTCGCGAAA
GAGGTGTACATGCGAAAGTGAGCACGAATTACATCCAGCCCGCAACCAGA
CCCGACCTAGAGAGCGTAGAATTACCCGCCTGCCGTGGGGCGTATACGCG
GCGACTTACTATATTTTGGGGACACGCAAAATTCTCGTGAATAGCAGGTC
GGCGATCGGCGCAGCGCCCGACATCTTCCACCTTGACTCGGAGCCCTCTT
TTTCGATGAGCCACCGGCGTGCAAGGTTCCCCAGCCGCGAGCGATCCCTC
ATCCTCGAGTTCGTGCGCGAGGCATCGGGGTCTGCGCACTATTATCCGCA
CCATCACCATTATCCTCAGCAGTCGTCGGCGACGGGCGAGAGCGGTGGAT
ACGGACACAGAGCGACTTCCTCAGCCGCGGCCTCGGGGACGGGGACGGAA
ACTGGCGCAGAGTCTTCTACCCCATCGAGTCCAATGGTGGGTCGACTAGC
AAGTTGTATCCGGCGGGCCAACAGCAGCCGCCGAGCCAGCAGTCACCGCG
CGAGTAGCCACCGTGCGGCAAGCAACCGTGCGGCCAGCCATCGCGCAGCC
AGCCACCGAGCGGCCAGCCATCGCGTCGACAACAATCGAAGGAACAGCAG
CATCAGCCGGAGGTATGCCAGCGGCAGCACGTTGGCCGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig67413:1489..2630-

>mRNA_H-elongata_contig67413.14346.1 ID=mRNA_H-elongata_contig67413.14346.1|Name=mRNA_H-elongata_contig67413.14346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig67413:1489..2630- (Himanthalia elongata Himel1 dioecious)
GACGCCTCGCCCTTAAAGAAAACGGGGAGGTCTTGGCACGGCGGGTCGAC
GAGGAACCGCCGGGCCGTTAGCGGTGGTGGAAGCAGGTTGGAATTTGGTT
CTCCGCCCCGGCGGCGCTCCGCGGGCGACTCTACCGACGGCGCGGGCGGT
GTTTTGGATTGTCTTGGAGATTTTGTCGGTGGCGGACATGCTCTGTGCCG
CTCTAGATCAAGGACGCCTCGCCCTTAAAGAAAACGGGGAGGTCTTGGCA
CGGCGGGTCGACGAGGAACCGCCGGGCCGTTAGCGGTGGTGGAAGCAGGT
TGGAATTTGGTTCTCCGCCCCGGCGGCGCTCCGCGGGCGACTCTACCGAC
GGCGCGGGCGGTGTTTTGGATTGTCTTGGAGATTTTGTCGGTGGCGGACA
TGCTCTGTGCCGCTCTAGATCAAGGTCGGCGATCGGCGCAGCGCCCGACA
TCTTCCACCTTGACTCGGAGCCCTCTTTTTCGATGAGCCACCGGCGTGCA
AGGTTCCCCAGCCGCGAGCGATCCCTCATCCTCGAGTTCGTGCGCGAGGC
ATCGGGGTCTGCGCACTATTATCCGCACCATCACCATTATCCTCAGCAGT
CGTCGGCGACGGGCGAGAGCGGTGGATACGGACACAGAGCGACTTCCTCA
GCCGCGGCCTCGGGGACGGGGACGGAAACTGGCGCAGAGTCTTCTACCCC
ATCGAGTCCAATGGTGGGTCGACTAGCAAGTTGTATCCGGCGGGCCAACA
GCAGCCGCCGAGCCAGCAGTCACCGCGCGAGTAGCCACCGTGCGGCAAGC
AACCGTGCGGCCAGCCATCGCGCAGCCAGCCACCGAGCGGCCAGCCATCG
CGTCGACAACAATCGAAGGAACAGCAGCATCAGCCGGAGGTATGCCAGCG
GCAGCACGTTGGCCGGAGTCGGCGATCGGCGCAGCGCCCGACATCTTCCA
CCTTGACTCGGAGCCCTCTTTTTCGATGAGCCACCGGCGTGCAAGGTTCC
CCAGCCGCGAGCGATCCCTCATCCTCGAGTTCGTGCGCGAGGCATCGGGG
TCTGCGCACTATTATCCGCACCATCACCATTATCCTCAGCAGTCGTCGGC
GACGGGCGAGAGCGGTGGATACGGACACAGAGCGACTTCCTCAGCCGCGG
CCTCGGGGACGGGGACGGAAACTGGCGCAGAGTCTTCTACCCCATCGAGT
CCAATGGTGGGTCGACTAGCAAGTTGTATCCGGCGGGCCAACAGCAGCCG
CCGAGCCAGCAGTCACCGCGCGAGTAGCCACCGTGCGGCAAGCAACCGTG
CGGCCAGCCATCGCGCAGCCAGCCACCGAGCGGCCAGCCATCGCGTCGAC
AACAATCGAAGGAACAGCAGCATCAGCCGGAGGTATGCCAGCGGCAGCAC
GTTGGCCGGA
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