prot_H-elongata_contig67398.14345.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67398.14345.1
Unique Nameprot_H-elongata_contig67398.14345.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
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BLAST of mRNA_H-elongata_contig67398.14345.1 vs. uniprot
Match: D8LT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT47_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.550e-9
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0 
Query:    6 LESWAMRQRETRLVVSDVVASEELRSSLPPHGVSAGTAVPPAPLPGLSGVSAKICTVLLFLFVAAWPF 73
            L+ W +R R   +   D   + ELR   PP  V  G +    PLPGLS +SAK+CTVLLFLFVAAWPF
Sbjct:    3 LDGW-VRHRADVMAAYDTAPAAELR---PPPIVMGGAS---PPLPGLSRLSAKVCTVLLFLFVAAWPF 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67398.14345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT47_ECTSI6.550e-951.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..73
NoneNo IPR availableTMHMMTMhelixcoord: 49..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67398contigH-elongata_contig67398:2859..3329 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67398.14345.1mRNA_H-elongata_contig67398.14345.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67398 2859..3329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67398.14345.1 ID=prot_H-elongata_contig67398.14345.1|Name=mRNA_H-elongata_contig67398.14345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MDYDALESWAMRQRETRLVVSDVVASEELRSSLPPHGVSAGTAVPPAPLP
GLSGVSAKICTVLLFLFVAAWPF
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