mRNA_H-elongata_contig67331.14341.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67331.14341.1
Unique NamemRNA_H-elongata_contig67331.14341.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: D8LIW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIW5_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 5.260e-29
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLNSAVRGVE 192
            RPTGRVQ+LTHLAY+GYCFNPVSFYYCLD +  +IETVV EVSNTPWG+MHCYVLN   +GV+
Sbjct:  194 RPTGRVQLLTHLAYLGYCFNPVSFYYCLDKTEREIETVVAEVSNTPWGEMHCYVLNPKTKGVQ 256
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A836CG36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG36_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.280e-24
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLNSAVRGV 189
            RP G V++LTHL Y+GYCFNPVSFYYC DA G +++ VVGEVSNTPW +MHCY L   V GV
Sbjct:   81 RPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGV 142
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A0S8G4U9_9PROT (Chromosome partitioning protein ParA (Fragment) n=1 Tax=Acidithiobacillales bacterium SM23_46 TaxID=1703385 RepID=A0A0S8G4U9_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 1.330e-23
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLNSA 177
            RP G +++LTHL Y GY FNPVSFYYC DA+G+++ET+V EV+NTPWG+ HCYVL+ +
Sbjct:   84 RPAGPIRLLTHLRYFGYGFNPVSFYYCFDATGSRVETIVAEVNNTPWGEQHCYVLSES 141
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A7Y1W1F8_9GAMM (DUF1365 domain-containing protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y1W1F8_9GAMM)

HSP 1 Score: 97.8 bits (242), Expect = 1.860e-23
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLNSA 177
            RP G +++LTHL+Y GYCFNPVSFYYC DA G ++E VV EV+NTPWG+ HCYVL+ +
Sbjct:   84 RPQGPIRLLTHLSYFGYCFNPVSFYYCFDARGQQVEAVVAEVNNTPWGEQHCYVLDGS 141
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A193LFH4_9GAMM (Chromosome partitioning protein ParA n=1 Tax=Woeseia oceani TaxID=1548547 RepID=A0A193LFH4_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 2.740e-22
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVL 168
            RP G +++LTHL Y GYCFNP SFYYC DA+G  +ET+V EV+NTPWG+ HCYVL
Sbjct:   84 RPNGPIRLLTHLRYFGYCFNPASFYYCFDATGRFVETIVVEVNNTPWGEQHCYVL 138
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A3B8HRW6_9DELT (DUF1365 domain-containing protein n=1 Tax=Syntrophobacteraceae bacterium TaxID=2052185 RepID=A0A3B8HRW6_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 3.790e-22
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TRPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVL 168
            TRP G +++LTHL Y GYCFNPVSFYYC D +G+++ET+V E+ NTPW + HCYVL
Sbjct:   83 TRPAGPIRILTHLRYFGYCFNPVSFYYCYDQAGSRVETIVTEIHNTPWQEEHCYVL 138
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A4D9CPL7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPL7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.250e-22
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLNSAVRGVE 192
            RP GR+ +LTHL YMGY FNPVSFYY  D  G  +ETVV EVSNTPW +MHCYVL+    G++
Sbjct:   69 RPEGRITLLTHLRYMGYVFNPVSFYYVWDKEGKGVETVVAEVSNTPWNEMHCYVLDPRSPGIK 131
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: UPI0019C7BA1C (DUF1365 domain-containing protein n=1 Tax=Candidatus Obscuribacterales bacterium TaxID=2364082 RepID=UPI0019C7BA1C)

HSP 1 Score: 93.6 bits (231), Expect = 8.650e-22
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLNS 174
            RP+G +++LTHL Y G+CFNPV+FYYC DASG +IET+V E++NTPW + H YVLNS
Sbjct:   84 RPSGPIRMLTHLRYFGHCFNPVTFYYCFDASGERIETIVTEITNTPWKERHTYVLNS 140
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BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A0S8A844_9GAMM (Chromosome partitioning protein ParA n=1 Tax=Gammaproteobacteria bacterium SG8_11 TaxID=1703402 RepID=A0A0S8A844_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 8.660e-22
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    7 PTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLNSAV 180
            P G +++LTHL Y GYCFNPVSFYYC DAS  ++E +V EV+NTPWG+ HCYVL  ++
Sbjct:   96 PRGPIRLLTHLRYFGYCFNPVSFYYCYDASDTRVEAIVAEVNNTPWGEQHCYVLTESM 153
[Close]
BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Match: A0A0S8AAD9_9GAMM (Chromosome partitioning protein ParA n=1 Tax=Gammaproteobacteria bacterium SG8_15 TaxID=1703403 RepID=A0A0S8AAD9_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 1.290e-21
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    4 RPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQMHCYVLN 171
            RP G +++LTH  Y GYCFNPVSFYYC D +  K+ET+V EV+NTPWG+ HCYVL+
Sbjct:  104 RPRGPIRLLTHFRYFGYCFNPVSFYYCFDDADQKVETIVAEVNNTPWGERHCYVLS 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67331.14341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIW5_ECTSI5.260e-2977.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG36_9STRA5.280e-2467.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0S8G4U9_9PROT1.330e-2363.79Chromosome partitioning protein ParA (Fragment) n=... [more]
A0A7Y1W1F8_9GAMM1.860e-2365.52DUF1365 domain-containing protein n=1 Tax=Xanthomo... [more]
A0A193LFH4_9GAMM2.740e-2267.27Chromosome partitioning protein ParA n=1 Tax=Woese... [more]
A0A3B8HRW6_9DELT3.790e-2264.29DUF1365 domain-containing protein n=1 Tax=Syntroph... [more]
A0A4D9CPL7_9STRA4.250e-2263.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI0019C7BA1C8.650e-2264.91DUF1365 domain-containing protein n=1 Tax=Candidat... [more]
A0A0S8A844_9GAMM8.660e-2262.07Chromosome partitioning protein ParA n=1 Tax=Gamma... [more]
A0A0S8AAD9_9GAMM1.290e-2164.29Chromosome partitioning protein ParA n=1 Tax=Gamma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67331contigH-elongata_contig67331:230..1113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.1e-24
Seed eggNOG ortholog2880.D8LIW5
EggNOG free text desc.Protein of unknown function (DUF1365)
EggNOG OGs2QVK6@2759,COG3496@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.2604272-CDS-H-elongata_contig67331:229..2951622931064.2604272-CDS-H-elongata_contig67331:229..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67331 230..295 -
1691679683.2178888-CDS-H-elongata_contig67331:229..2951691679683.2178888-CDS-H-elongata_contig67331:229..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67331 230..295 -
1622931064.2803085-CDS-H-elongata_contig67331:987..11131622931064.2803085-CDS-H-elongata_contig67331:987..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67331 988..1113 -
1691679683.233312-CDS-H-elongata_contig67331:987..11131691679683.233312-CDS-H-elongata_contig67331:987..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67331 988..1113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67331.14341.1prot_H-elongata_contig67331.14341.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67331 230..1113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67331.14341.1

>prot_H-elongata_contig67331.14341.1 ID=prot_H-elongata_contig67331.14341.1|Name=mRNA_H-elongata_contig67331.14341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
TRPTGRVQVLTHLAYMGYCFNPVSFYYCLDASGNKIETVVGEVSNTPWGQ
MHCYVLNSAVRGVE
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mRNA from alignment at H-elongata_contig67331:230..1113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67331.14341.1 ID=mRNA_H-elongata_contig67331.14341.1|Name=mRNA_H-elongata_contig67331.14341.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig67331:230..1113- (Himanthalia elongata Himel1 dioecious)
ACAAGGCCTACAGGGCGAGTGCAAGTCTTGACCCACCTGGCCTACATGGG
CTACTGCTTCAACCCCGTGTCGTTCTACTACTGTCTGGACGCTTCAGGAA
ACAAGATCGAGACTGTGGTCGGGGAGGTAGAGAAAAAAACATTACATCGG
AAAGGGAAAATCTCTCGGCGCCGCCTCGCCACGGACGGTAGTGACGAAGT
CGGCCCGCCATTTATTGCGTGAAAATATTTTGGAATTGAACGAAACATTC
TTGCCTTTTTTTTTTTGTACAAGTTCGGTCTTCCTTCAGCCAGGTCAGGG
AGGAACCATGTAATAGGCGCAGGTTTGAGGTTTAGGGCTTTGTGCTTACG
GCAACGTCGTCCAAAGCACATGGTGTAACCGAGATGACATGTGGAGGTAG
CGGTCTTGCCGATGGGGCTTCCCCTCATTCCCATCAACCCACTTTTATTA
GCTACTTCGTTTACGAGTATACTGCATGTACCGCAGTCTCTTGTCTTTAT
CCTCATCAGTAAGAGCTACCGAAAAACAGGTAAAACATGATTCAGTGAAG
TGTAAGGACGCGAAAGCAATGAAGCGTGGGCGCGGTCTCAAGGGTATATG
TGCGGGCTGCGCTACCGGGCTGTGCTGTGACGAATCTGTCGCGACGAGGA
AGAATGCGTTGCGTTGTCCTGTCTGCTGCCTACTGGTATTCCTTTTTCTC
TCTGTCATAGTCTGTCTCTCTCTGCCTCCCTCTCTATCCCCTCGACTCTA
GCGCGTATGTCCCTGGTGCTCTACACTTCCAGAGCTACGTTTTGATCGCC
ATACCCCCTCATCTACAGGTGAGCAACACCCCCTGGGGCCAGATGCACTG
CTACGTACTCAACTCCGCGGTTCGAGGGGTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig67331:230..1113-

>mRNA_H-elongata_contig67331.14341.1 ID=mRNA_H-elongata_contig67331.14341.1|Name=mRNA_H-elongata_contig67331.14341.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig67331:230..1113- (Himanthalia elongata Himel1 dioecious)
ACAAGGCCTACAGGGCGAGTGCAAGTCTTGACCCACCTGGCCTACATGGG
CTACTGCTTCAACCCCGTGTCGTTCTACTACTGTCTGGACGCTTCAGGAA
ACAAGATCGAGACTGTGGTCGGGGAGACAAGGCCTACAGGGCGAGTGCAA
GTCTTGACCCACCTGGCCTACATGGGCTACTGCTTCAACCCCGTGTCGTT
CTACTACTGTCTGGACGCTTCAGGAAACAAGATCGAGACTGTGGTCGGGG
AGGTGAGCAACACCCCCTGGGGCCAGATGCACTGCTACGTACTCAACTCC
GCGGTTCGAGGGGTCGAGGTGAGCAACACCCCCTGGGGCCAGATGCACTG
CTACGTACTCAACTCCGCGGTTCGAGGGGTCGAG
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