mRNA_H-elongata_contig67275.14336.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A6H5LAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE) HSP 1 Score: 327 bits (839), Expect = 4.300e-110 Identity = 179/265 (67.55%), Postives = 202/265 (76.23%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNA-SKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQA-----------------AKIRR--------TGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMAL--PGLSRLGSTFVRSANLYLGSLTIVDWLRFVGLQH 711
RARLLGD+TFMTKLAIE++TGT +Q +AEYQKRGKRF QEL+FV ADTLTCLFANFAAVWLSCPTVAV A KK KAGG LQ +LA+CPSNAFQKVV EGGVSK+FS+++RGAAL++PMPKLFV+GFGATL GYGL+AGLE A AK +R AE KP VPVLGS LA+G FLAV TN+RYQFIAGAVEQR+FDTM PGLS L ST VRSANLY+GSLTIVDWLR+VG+Q
Sbjct: 39 RARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 303
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: D7FZL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI) HSP 1 Score: 325 bits (834), Expect = 1.390e-107 Identity = 178/265 (67.17%), Postives = 202/265 (76.23%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNA-SKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQA-----------------AKIRR--------TGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMAL--PGLSRLGSTFVRSANLYLGSLTIVDWLRFVGLQH 711
RARLLGD+TFMTKLAIE++TGT +Q +AEYQKRGK+F QEL+FV ADTLTCLFANFAAVWLSCPTVAV A KK KAGG LQ +LA+CPSNAFQKVV EGGVSK+FS+++RGAAL++PMPKLFV+GFGATL GYGL+AGLE A AK +R AE KP VPVLGS LA+G FLAV TN+RYQFIAGAVEQR+FDTM PGLS L ST VRSANLY+GSLTIVD LR+VG+QH
Sbjct: 163 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQH 427
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A836CF64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA) HSP 1 Score: 189 bits (479), Expect = 1.530e-56 Identity = 109/225 (48.44%), Postives = 146/225 (64.89%), Query Frame = 1
Query: 73 QVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTV------AVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAA----KIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTM--ALPGLSRLGSTFVRSANLYLGSLTIVDWLRFVGLQH 711
QV+AEY+KR +F +E +FV AD LT FANFAAVW SCPT+ + +A+ KG+ +L ++ SCPSNAFQ+VV + +S++QRGAAL+ PMP+LFV+GFGA GYGL + + + + A ++ T ED P+ SSLAIG FLAVS+N+RYQ IAG +EQR D + P +S S +R+ANLYLG+ IVDWLR VG+QH
Sbjct: 2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMF---ASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRLALDPTMVKNT-------ED---APIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQH 210
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A7S3XYV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK) HSP 1 Score: 162 bits (411), Expect = 1.850e-45 Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPG--LSRLGSTFVRSANLYLGSLTIVDWLRFVGL 705
R RL+ D +F+TK A+EI G V Q+ AE ++RG + Q+L+FV AD LTC+ ANF AVWL+ PT+A A AG A++ + SCP NAFQKV T G F+++QR LV P+LF+VGF A++ G+G GL + + E G V VL +L IG +L VSTNVRYQ +AG +E+R+ + L+ GS R+ N ++GS +V L++ GL
Sbjct: 64 RNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALAPPPAA--AGNAVKRFFDSCPGNAFQKV-TPGRAP--FTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLSKLREKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A7S1EMP3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EMP3_HEMAN) HSP 1 Score: 158 bits (400), Expect = 7.310e-44 Identity = 96/239 (40.17%), Postives = 143/239 (59.83%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEG-EDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLS--RLGSTFVRSANLYLGSLTIVDWLRFVGLQ 708
R RLL D+TF+ K+AIE++ G Q++AEYQ RGK F +E +FV A TC+ ANF ++L+ PT+ A+ A+ + SCP NAFQ V+ +G + SF QR + PMP+LF +G A GY L A +R+ ++G D A+ + +A+G ++A+S+N+RYQF+AG +EQR+ DT+ +S GST +R+AN YLGS +V +LR++GLQ
Sbjct: 57 RDRLLADNTFLNKVAIEVVIGGAMQLIAEYQNRGKAFVKEFDFVIAGIATCVLANFFTLYLAAPTLVPKAASLTT----SAVAKFFNSCPDNAFQTVL-KGMPAPSFV--QRCGGIFKPMPELFFIGLVAASGGY-----LYTACNVAVRKFFNPKSQGGADLDALQIGKIGVAVGAYVAISSNLRYQFMAGVLEQRVLDTLLAGQVSLRTAGSTVIRTANTYLGSYLLVAYLRWLGLQ 283
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A833R1V6_9POAL (Protein RETICULATA-RELATED 4 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R1V6_9POAL) HSP 1 Score: 156 bits (395), Expect = 3.140e-42 Identity = 97/238 (40.76%), Postives = 138/238 (57.98%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
+ RLL D F+TK+ IE G ++ AEY+KR + F +EL+FV AD + L A+F VWL PTV++ K + + G + + SCP NAFQ V G S+S QR A++ KLF VG GA+L G GL L Y++ A + + ED VP+L +S A G ++AVS+N+RYQ +AG +EQRM + + LG+ VR+ N +LGSL VD+ R+VG+Q
Sbjct: 155 KERLLADDLFLTKVGIECGVGIFTKTAAEYEKRKENFLKELDFVLADVIMALVADFMLVWLPAPTVSL---KPPLAVSAGPIAKFFYSCPDNAFQVVALSG---TSYSFLQRVGAILRNGSKLFGVGTGASLIGTGLTNALIYSRKAFDK---DFAGVAED---VPILSTSAAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNQKLALGALCFAVRTGNTFLGSLMWVDYARWVGVQ 380
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A251VLI5_HELAN (Uncharacterized protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VLI5_HELAN) HSP 1 Score: 155 bits (391), Expect = 1.030e-41 Identity = 96/239 (40.17%), Postives = 138/239 (57.74%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQH 711
+ RLL D FMTK+AIE G ++ AE +KR + FS+EL+FV AD + L A+F VWL PTV++ A V + G + + A CP NAFQ + S+S+ QR A+ KLF VG GA+L G G+ L A+ A +T A D+ +P+L +S+A G ++AVS+N+RYQ IAG +EQRM + + L + VR+ N +LGSL VD+ R++G+Q
Sbjct: 146 KERLLADDLFMTKVAIECGVGIFTKSAAELEKRRENFSKELDFVTADVIMALIADFMLVWLPAPTVSLRAP---VAVSAGRVAKFFAGCPDNAFQVALA----GTSYSLLQRIGAIARNGAKLFGVGTGASLIGTGITNLLINARKA----VDKTFAAEADEEDIPILSTSVAYGVYMAVSSNLRYQVIAGVIEQRMLEPLLHQHKLILSAICFAVRTGNTFLGSLMWVDYARWIGIQR 373
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A6A4LPZ0_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LPZ0_9ERIC) HSP 1 Score: 155 bits (391), Expect = 1.350e-41 Identity = 96/238 (40.34%), Postives = 141/238 (59.24%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
+ RLL D F+TK+AIE G ++ AE ++R ++F++EL+FVFAD + + A+F VWL PTV++ + + + G L + CP NAFQ + S+S QR A+V KLF VG GA+L G G+ GL A+ A I +T E ED VP+L +S+A G ++AVS+N+RYQ +AG +EQR + + L +T VR+ N +LGSL VD+ R+VG+Q
Sbjct: 161 KERLLADDLFLTKVAIECGVGIFTKTAAEXERRREKFTKELDFVFADVVMAIIADFMLVWLPAPTVSL---RPALAVSAGPLAKFFYGCPDNAFQVALA----GTSYSFLQRVGAIVRNGAKLFAVGTGASLVGTGITNGLINARKA-IDKT--FAGEAED---VPILSTSVAYGVYMAVSSNLRYQVLAGVIEQRXLEPLLHQHKIWLSATCFAVRTGNTFLGSLMWVDYARWVGIQ 385
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A6P5H2P0_ANACO (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5H2P0_ANACO) HSP 1 Score: 154 bits (388), Expect = 2.400e-41 Identity = 94/238 (39.50%), Postives = 141/238 (59.24%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
+ RLL D F+TK+AIE G ++ AE+++R +F +EL+FVFAD + + A+F VWL PTV++ K + + G + + SCP NAFQ + S+S+ QR A+V KLFVVG GA+L G G+ L + A + + +E ED VPVL +S+A G ++AVS+N+RYQ +AG +EQRM + + L + VR+ N +LGSL VD+ R++G+Q
Sbjct: 140 KERLLADDLFLTKVAIECGVGIFTKTAAEWERRRDKFPKELDFVFADVVMAIIADFMLVWLPAPTVSL---KPPLALSAGPIAKFFYSCPDNAFQVALA----GTSYSVLQRVGAIVRNGSKLFVVGTGASLIGTGITNVLINIRKAFDK---DFASEAED---VPVLSTSIAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNRKLALSAMCFAVRTGNTFLGSLMWVDYARWIGIQ 364
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: UPI0002C3678E (uncharacterized protein LOC101299328 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C3678E) HSP 1 Score: 151 bits (381), Expect = 2.980e-41 Identity = 91/238 (38.24%), Postives = 141/238 (59.24%), Query Frame = 1
Query: 1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
+ RLL D F+TK+ IE G ++ AE ++R ++F++EL+FVFAD + + A+F VWL PTV++ +K +V + G + + CP NAFQ ++ S+S+ QR A++ KLFVVG GA+L G G+ L A+ A + E ED VP+L +S A G ++AVS+N+RYQ +AG +EQR+ + + L + VR+ N +LGSL VD+ R++G+Q
Sbjct: 53 KERLLADDLFLTKVGIECGVGIFTKTAAELERRREKFTKELDFVFADVVMAIIADFMLVWLPAPTVSL---RKPLVVSAGRVAKFFYGCPDNAFQVALS----GTSYSLLQRIGAILRNGAKLFVVGTGASLVGTGVTNALIAARKALDK---SFAGEAED---VPILSTSAAYGVYMAVSSNLRYQVLAGIIEQRILEPLLHQHKLALSAICFAVRTGNTFLGSLMWVDYARWIGIQ 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67275.14336.1 >prot_H-elongata_contig67275.14336.1 ID=prot_H-elongata_contig67275.14336.1|Name=mRNA_H-elongata_contig67275.14336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp MTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWback to top mRNA from alignment at H-elongata_contig67275:467..1650- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67275.14336.1 ID=mRNA_H-elongata_contig67275.14336.1|Name=mRNA_H-elongata_contig67275.14336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1184bp|location=Sequence derived from alignment at H-elongata_contig67275:467..1650- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67275:467..1650- >mRNA_H-elongata_contig67275.14336.1 ID=mRNA_H-elongata_contig67275.14336.1|Name=mRNA_H-elongata_contig67275.14336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig67275:467..1650- (Himanthalia elongata Himel1 dioecious)back to top |