mRNA_H-elongata_contig67275.14336.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67275.14336.1
Unique NamemRNA_H-elongata_contig67275.14336.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A6H5LAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 4.300e-110
Identity = 179/265 (67.55%), Postives = 202/265 (76.23%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNA-SKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQA-----------------AKIRR--------TGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMAL--PGLSRLGSTFVRSANLYLGSLTIVDWLRFVGLQH 711
            RARLLGD+TFMTKLAIE++TGT +Q +AEYQKRGKRF QEL+FV ADTLTCLFANFAAVWLSCPTVAV A  KK   KAGG LQ +LA+CPSNAFQKVV EGGVSK+FS+++RGAAL++PMPKLFV+GFGATL GYGL+AGLE   A                 AK +R             AE   KP VPVLGS LA+G FLAV TN+RYQFIAGAVEQR+FDTM    PGLS L ST VRSANLY+GSLTIVDWLR+VG+Q 
Sbjct:   39 RARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 303          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: D7FZL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 1.390e-107
Identity = 178/265 (67.17%), Postives = 202/265 (76.23%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNA-SKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQA-----------------AKIRR--------TGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMAL--PGLSRLGSTFVRSANLYLGSLTIVDWLRFVGLQH 711
            RARLLGD+TFMTKLAIE++TGT +Q +AEYQKRGK+F QEL+FV ADTLTCLFANFAAVWLSCPTVAV A  KK   KAGG LQ +LA+CPSNAFQKVV EGGVSK+FS+++RGAAL++PMPKLFV+GFGATL GYGL+AGLE   A                 AK +R             AE   KP VPVLGS LA+G FLAV TN+RYQFIAGAVEQR+FDTM    PGLS L ST VRSANLY+GSLTIVD LR+VG+QH
Sbjct:  163 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQH 427          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A836CF64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.530e-56
Identity = 109/225 (48.44%), Postives = 146/225 (64.89%), Query Frame = 1
Query:   73 QVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTV------AVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAA----KIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTM--ALPGLSRLGSTFVRSANLYLGSLTIVDWLRFVGLQH 711
            QV+AEY+KR  +F +E +FV AD LT  FANFAAVW SCPT+      + +A+ KG+     +L  ++ SCPSNAFQ+VV     +  +S++QRGAAL+ PMP+LFV+GFGA   GYGL + + + + A     ++ T       ED    P+  SSLAIG FLAVS+N+RYQ IAG +EQR  D    + P +S   S  +R+ANLYLG+  IVDWLR VG+QH
Sbjct:    2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMF---ASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRLALDPTMVKNT-------ED---APIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQH 210          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A7S3XYV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK)

HSP 1 Score: 162 bits (411), Expect = 1.850e-45
Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPG--LSRLGSTFVRSANLYLGSLTIVDWLRFVGL 705
            R RL+ D +F+TK A+EI  G V Q+ AE ++RG +  Q+L+FV AD LTC+ ANF AVWL+ PT+A  A       AG A++ +  SCP NAFQKV T G     F+++QR   LV   P+LF+VGF A++ G+G   GL   +      + E    G     V VL  +L IG +L VSTNVRYQ +AG +E+R+   +      L+  GS   R+ N ++GS  +V  L++ GL
Sbjct:   64 RNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALAPPPAA--AGNAVKRFFDSCPGNAFQKV-TPGRAP--FTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLSKLREKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A7S1EMP3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EMP3_HEMAN)

HSP 1 Score: 158 bits (400), Expect = 7.310e-44
Identity = 96/239 (40.17%), Postives = 143/239 (59.83%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEG-EDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLS--RLGSTFVRSANLYLGSLTIVDWLRFVGLQ 708
            R RLL D+TF+ K+AIE++ G   Q++AEYQ RGK F +E +FV A   TC+ ANF  ++L+ PT+   A+         A+  +  SCP NAFQ V+ +G  + SF   QR   +  PMP+LF +G  A   GY     L  A    +R+     ++G  D  A+ +    +A+G ++A+S+N+RYQF+AG +EQR+ DT+    +S    GST +R+AN YLGS  +V +LR++GLQ
Sbjct:   57 RDRLLADNTFLNKVAIEVVIGGAMQLIAEYQNRGKAFVKEFDFVIAGIATCVLANFFTLYLAAPTLVPKAASLTT----SAVAKFFNSCPDNAFQTVL-KGMPAPSFV--QRCGGIFKPMPELFFIGLVAASGGY-----LYTACNVAVRKFFNPKSQGGADLDALQIGKIGVAVGAYVAISSNLRYQFMAGVLEQRVLDTLLAGQVSLRTAGSTVIRTANTYLGSYLLVAYLRWLGLQ 283          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A833R1V6_9POAL (Protein RETICULATA-RELATED 4 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R1V6_9POAL)

HSP 1 Score: 156 bits (395), Expect = 3.140e-42
Identity = 97/238 (40.76%), Postives = 138/238 (57.98%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
            + RLL D  F+TK+ IE   G  ++  AEY+KR + F +EL+FV AD +  L A+F  VWL  PTV++   K  +  + G +  +  SCP NAFQ V   G    S+S  QR  A++    KLF VG GA+L G GL   L Y++ A  +   +     ED   VP+L +S A G ++AVS+N+RYQ +AG +EQRM + +       LG+    VR+ N +LGSL  VD+ R+VG+Q
Sbjct:  155 KERLLADDLFLTKVGIECGVGIFTKTAAEYEKRKENFLKELDFVLADVIMALVADFMLVWLPAPTVSL---KPPLAVSAGPIAKFFYSCPDNAFQVVALSG---TSYSFLQRVGAILRNGSKLFGVGTGASLIGTGLTNALIYSRKAFDK---DFAGVAED---VPILSTSAAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNQKLALGALCFAVRTGNTFLGSLMWVDYARWVGVQ 380          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A251VLI5_HELAN (Uncharacterized protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VLI5_HELAN)

HSP 1 Score: 155 bits (391), Expect = 1.030e-41
Identity = 96/239 (40.17%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQH 711
            + RLL D  FMTK+AIE   G  ++  AE +KR + FS+EL+FV AD +  L A+F  VWL  PTV++ A    V  + G +  + A CP NAFQ  +       S+S+ QR  A+     KLF VG GA+L G G+   L  A+ A      +T A   D+  +P+L +S+A G ++AVS+N+RYQ IAG +EQRM + +       L +    VR+ N +LGSL  VD+ R++G+Q 
Sbjct:  146 KERLLADDLFMTKVAIECGVGIFTKSAAELEKRRENFSKELDFVTADVIMALIADFMLVWLPAPTVSLRAP---VAVSAGRVAKFFAGCPDNAFQVALA----GTSYSLLQRIGAIARNGAKLFGVGTGASLIGTGITNLLINARKA----VDKTFAAEADEEDIPILSTSVAYGVYMAVSSNLRYQVIAGVIEQRMLEPLLHQHKLILSAICFAVRTGNTFLGSLMWVDYARWIGIQR 373          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A6A4LPZ0_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LPZ0_9ERIC)

HSP 1 Score: 155 bits (391), Expect = 1.350e-41
Identity = 96/238 (40.34%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
            + RLL D  F+TK+AIE   G  ++  AE ++R ++F++EL+FVFAD +  + A+F  VWL  PTV++   +  +  + G L  +   CP NAFQ  +       S+S  QR  A+V    KLF VG GA+L G G+  GL  A+ A I +T     E ED   VP+L +S+A G ++AVS+N+RYQ +AG +EQR  + +       L +T   VR+ N +LGSL  VD+ R+VG+Q
Sbjct:  161 KERLLADDLFLTKVAIECGVGIFTKTAAEXERRREKFTKELDFVFADVVMAIIADFMLVWLPAPTVSL---RPALAVSAGPLAKFFYGCPDNAFQVALA----GTSYSFLQRVGAIVRNGAKLFAVGTGASLVGTGITNGLINARKA-IDKT--FAGEAED---VPILSTSVAYGVYMAVSSNLRYQVLAGVIEQRXLEPLLHQHKIWLSATCFAVRTGNTFLGSLMWVDYARWVGIQ 385          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: A0A6P5H2P0_ANACO (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5H2P0_ANACO)

HSP 1 Score: 154 bits (388), Expect = 2.400e-41
Identity = 94/238 (39.50%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
            + RLL D  F+TK+AIE   G  ++  AE+++R  +F +EL+FVFAD +  + A+F  VWL  PTV++   K  +  + G +  +  SCP NAFQ  +       S+S+ QR  A+V    KLFVVG GA+L G G+   L   + A  +   +  +E ED   VPVL +S+A G ++AVS+N+RYQ +AG +EQRM + +       L +    VR+ N +LGSL  VD+ R++G+Q
Sbjct:  140 KERLLADDLFLTKVAIECGVGIFTKTAAEWERRRDKFPKELDFVFADVVMAIIADFMLVWLPAPTVSL---KPPLALSAGPIAKFFYSCPDNAFQVALA----GTSYSVLQRVGAIVRNGSKLFVVGTGASLIGTGITNVLINIRKAFDK---DFASEAED---VPVLSTSIAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNRKLALSAMCFAVRTGNTFLGSLMWVDYARWIGIQ 364          
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Match: UPI0002C3678E (uncharacterized protein LOC101299328 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C3678E)

HSP 1 Score: 151 bits (381), Expect = 2.980e-41
Identity = 91/238 (38.24%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    1 RARLLGDSTFMTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVWLSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMSQRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGEDKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLGSTF--VRSANLYLGSLTIVDWLRFVGLQ 708
            + RLL D  F+TK+ IE   G  ++  AE ++R ++F++EL+FVFAD +  + A+F  VWL  PTV++   +K +V + G +  +   CP NAFQ  ++      S+S+ QR  A++    KLFVVG GA+L G G+   L  A+ A  +       E ED   VP+L +S A G ++AVS+N+RYQ +AG +EQR+ + +       L +    VR+ N +LGSL  VD+ R++G+Q
Sbjct:   53 KERLLADDLFLTKVGIECGVGIFTKTAAELERRREKFTKELDFVFADVVMAIIADFMLVWLPAPTVSL---RKPLVVSAGRVAKFFYGCPDNAFQVALS----GTSYSLLQRIGAILRNGAKLFVVGTGASLVGTGVTNALIAARKALDK---SFAGEAED---VPILSTSAAYGVYMAVSSNLRYQVLAGIIEQRILEPLLHQHKLALSAICFAVRTGNTFLGSLMWVDYARWIGIQ 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67275.14336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAU0_9PHAE4.300e-11067.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZL4_ECTSI1.390e-10767.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CF64_9STRA1.530e-5648.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XYV0_HETAK1.850e-4541.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1EMP3_HEMAN7.310e-4440.17Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A833R1V6_9POAL3.140e-4240.76Protein RETICULATA-RELATED 4 n=1 Tax=Carex littled... [more]
A0A251VLI5_HELAN1.030e-4140.17Uncharacterized protein n=1 Tax=Helianthus annuus ... [more]
A0A6A4LPZ0_9ERIC1.350e-4140.34Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]
A0A6P5H2P0_ANACO2.400e-4139.50protein RETICULATA-RELATED 4, chloroplastic-like n... [more]
UPI0002C3678E2.980e-4138.24uncharacterized protein LOC101299328 n=1 Tax=Fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67275contigH-elongata_contig67275:467..1650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.2
Seed ortholog evalue3.9e-82
Seed eggNOG ortholog2880.D7FZL4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Protein RETICULATA-related
EggNOG OGs28IK9@1,2QQX6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size714
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67275.14336.1prot_H-elongata_contig67275.14336.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67275 467..1620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.6702993-CDS-H-elongata_contig67275:466..6191622931063.6702993-CDS-H-elongata_contig67275:466..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67275 467..619 -
1691679682.971349-CDS-H-elongata_contig67275:466..6191691679682.971349-CDS-H-elongata_contig67275:466..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67275 467..619 -
1622931063.6904573-CDS-H-elongata_contig67275:856..11681622931063.6904573-CDS-H-elongata_contig67275:856..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67275 857..1168 -
1691679682.9843142-CDS-H-elongata_contig67275:856..11681691679682.9843142-CDS-H-elongata_contig67275:856..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67275 857..1168 -
1622931063.7117102-CDS-H-elongata_contig67275:1401..16201622931063.7117102-CDS-H-elongata_contig67275:1401..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67275 1402..1620 -
1691679682.9944575-CDS-H-elongata_contig67275:1401..16201691679682.9944575-CDS-H-elongata_contig67275:1401..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67275 1402..1620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.728242-UTR-H-elongata_contig67275:1620..16501622931063.728242-UTR-H-elongata_contig67275:1620..1650Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67275 1621..1650 -
1691679683.0044854-UTR-H-elongata_contig67275:1620..16501691679683.0044854-UTR-H-elongata_contig67275:1620..1650Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67275 1621..1650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67275.14336.1

>prot_H-elongata_contig67275.14336.1 ID=prot_H-elongata_contig67275.14336.1|Name=mRNA_H-elongata_contig67275.14336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MTKLAIEIITGTVSQVVAEYQKRGKRFSQELEFVFADTLTCLFANFAAVW
LSCPTVAVNASKKGVVKAGGALQHWLASCPSNAFQKVVTEGGVSKSFSMS
QRGAALVIPMPKLFVVGFGATLFGYGLVAGLEYAQAAKIRRTGETCAEGE
DKPAVPVLGSSLAIGTFLAVSTNVRYQFIAGAVEQRMFDTMALPGLSRLG
STFVRSANLYLGSLTIVDWLRFVGLQH*
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mRNA from alignment at H-elongata_contig67275:467..1650-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67275.14336.1 ID=mRNA_H-elongata_contig67275.14336.1|Name=mRNA_H-elongata_contig67275.14336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1184bp|location=Sequence derived from alignment at H-elongata_contig67275:467..1650- (Himanthalia elongata Himel1 dioecious)
CGAGCGCGACTCTTGGGTGACAGTACGTTTATGACGAAGCTGGCTATCGA GATAATCACGGGCACGGTGTCTCAGGTGGTGGCGGAGTACCAAAAGCGTG GCAAGCGCTTCTCGCAGGAGCTCGAGTTTGTGTTCGCCGACACGCTGACT TGCCTCTTCGCCAACTTCGCCGCGGTCTGGCTGTCGTGCCCCACCGTGGC CGTCAACGCTTCCAAAAAGGGGGTGGTGAAGGCCGGCGGGGCCTTGCAGG TGAACGTCTCATTTTCCCTCCGAGTTTGATGTTTAGACTTCAAAAGAAAA AAATCGGACGGTACTACAGCTCTCTTCGTAATTTTTTGCGTTCGCCGTCA AAATCGTACGCCCGCCACGCATGCTTGCTTACCTTCTCAGTTATTTTTGT CACATACTCAAAACACACACGCTTTACAATAAGTTTTTTTGTCCTCTTTT GTTTCTTTCCCTGGTGCCCTCAATCCCATCAGCATTGGCTGGCTTCCTGC CCGTCGAACGCTTTCCAGAAGGTGGTCACAGAGGGTGGGGTTTCCAAGAG TTTTAGCATGTCTCAACGGGGAGCCGCGCTGGTCATCCCAATGCCGAAGC TTTTCGTCGTCGGGTTCGGTGCGACCTTATTCGGGTACGGTCTGGTGGCC GGATTGGAATACGCCCAAGCCGCGAAAATCAGGCGTACAGGAGAGACGTG CGCGGAGGGGGAAGACAAGCCCGCTGTCCCCGTGCTGGGTTCGAGCTTAG CGATTGGAACGTTCCTTGCAGTTTCCACGAATGTCCGGTATCAGGTACGC GTTGCCTCGCGCTACACTCTTGCGAGGTGTCGTCATCGGTAGGAATGCTT CGTTCTTCCCCGCTACTTGATTTTTGTCCTGTCCTGGTTGGAAGCAATTC GTTCCATGCGCGTCCGTTACAGGCTCAATTGCCTGGATTTGATGTTTTTC GCTCAACAGTTCTTCTATCGATTTGATGCCCTCTCGTTTGGTTTGCTTTG CTTTGGTACCCTCTCGTTTGTCCCCGCGCAGTTCATCGCCGGTGCGGTGG AGCAGAGGATGTTCGACACCATGGCCCTTCCTGGGCTGAGCAGACTGGGC TCCACCTTCGTGCGATCGGCTAACCTGTATCTCGGCTCTCTCACGATCGT GGACTGGCTCCGATTTGTCGGCTTGCAGCACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig67275:467..1650-

>mRNA_H-elongata_contig67275.14336.1 ID=mRNA_H-elongata_contig67275.14336.1|Name=mRNA_H-elongata_contig67275.14336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig67275:467..1650- (Himanthalia elongata Himel1 dioecious)
ATGACGAAGCTGGCTATCGAGATAATCACGGGCACGGTGTCTCAGGTGGT
GGCGGAGTACCAAAAGCGTGGCAAGCGCTTCTCGCAGGAGCTCGAGTTTG
TGTTCGCCGACACGCTGACTTGCCTCTTCGCCAACTTCGCCGCGGTCTGG
CTGTCGTGCCCCACCGTGGCCGTCAACGCTTCCAAAAAGGGGGTGGTGAA
GGCCGGCGGGGCCTTGCAGATGACGAAGCTGGCTATCGAGATAATCACGG
GCACGGTGTCTCAGGTGGTGGCGGAGTACCAAAAGCGTGGCAAGCGCTTC
TCGCAGGAGCTCGAGTTTGTGTTCGCCGACACGCTGACTTGCCTCTTCGC
CAACTTCGCCGCGGTCTGGCTGTCGTGCCCCACCGTGGCCGTCAACGCTT
CCAAAAAGGGGGTGGTGAAGGCCGGCGGGGCCTTGCAGCATTGGCTGGCT
TCCTGCCCGTCGAACGCTTTCCAGAAGGTGGTCACAGAGGGTGGGGTTTC
CAAGAGTTTTAGCATGTCTCAACGGGGAGCCGCGCTGGTCATCCCAATGC
CGAAGCTTTTCGTCGTCGGGTTCGGTGCGACCTTATTCGGGTACGGTCTG
GTGGCCGGATTGGAATACGCCCAAGCCGCGAAAATCAGGCGTACAGGAGA
GACGTGCGCGGAGGGGGAAGACAAGCCCGCTGTCCCCGTGCTGGGTTCGA
GCTTAGCGATTGGAACGTTCCTTGCAGTTTCCACGAATGTCCGGTATCAG
CATTGGCTGGCTTCCTGCCCGTCGAACGCTTTCCAGAAGGTGGTCACAGA
GGGTGGGGTTTCCAAGAGTTTTAGCATGTCTCAACGGGGAGCCGCGCTGG
TCATCCCAATGCCGAAGCTTTTCGTCGTCGGGTTCGGTGCGACCTTATTC
GGGTACGGTCTGGTGGCCGGATTGGAATACGCCCAAGCCGCGAAAATCAG
GCGTACAGGAGAGACGTGCGCGGAGGGGGAAGACAAGCCCGCTGTCCCCG
TGCTGGGTTCGAGCTTAGCGATTGGAACGTTCCTTGCAGTTTCCACGAAT
GTCCGGTATCAGTTCATCGCCGGTGCGGTGGAGCAGAGGATGTTCGACAC
CATGGCCCTTCCTGGGCTGAGCAGACTGGGCTCCACCTTCGTGCGATCGG
CTAACCTGTATCTCGGCTCTCTCACGATCGTGGACTGGCTCCGATTTGTC
GGCTTGCAGCACTAATTCATCGCCGGTGCGGTGGAGCAGAGGATGTTCGA
CACCATGGCCCTTCCTGGGCTGAGCAGACTGGGCTCCACCTTCGTGCGAT
CGGCTAACCTGTATCTCGGCTCTCTCACGATCGTGGACTGGCTCCGATTT
GTCGGCTTGCAGCACTAA
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