mRNA_H-elongata_contig11860.1435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11860.1435.1
Unique NamemRNA_H-elongata_contig11860.1435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A6H5JJY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY2_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.750e-35
Identity = 85/156 (54.49%), Postives = 105/156 (67.31%), Query Frame = -2
Query:   54 SGGGSGLLPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNV-STSSSTLSSANPGGSSNLNGYGNKRVQGAGAA---TAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 509
            SGGGS LLPSV DLFS+T GPDFL+ PGAG++F+V+AM+KEK ++    +T+    +           G   KR +   A    TAVGVK+PKGG         DK+  A GK+   K++AK++VKGQRLKGQSGIGSDFR WKSDLEMTMRQQYD
Sbjct:  114 SGGGS-LLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKEKKKQTAAEATTGDPTAXXXXXXXXXXXGATAKRERDVAAGVRGTAVGVKKPKGGXXXXXXXXVDKRKAAGGKE---KISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 265          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: D7G8J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.330e-25
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = -2
Query:   54 TAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 269
            TAVGVK+PKGG+AGPAGPP DK+  A  K+   K++AK++VKGQRLKGQSGIGSDFR WKSDLEMTMRQQYD
Sbjct:   43 TAVGVKKPKGGAAGPAGPPVDKRKAAGDKE---KISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 111          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A7S2W639_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W639_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.240e-19
Identity = 68/167 (40.72%), Postives = 91/167 (54.49%), Query Frame = -2
Query:   54 KEEVGKTRGEERLNCSGGGSGLLPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNVSTSSSTLSSANPGGSSNLNGYGNKRVQGAGAATAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 554
            K +VG   G++R        GLLPSV D+F++T GP FL+ P   +EF V  M+K +++       +S  +S+ P G+                ATA     P G S+G   P A K   A+     DK+  KERVK QRL+GQSGIG+DFR WK+D EM MRQQ+D
Sbjct:    3 KTKVGAVAGKKRPV-----PGLLPSVADVFASTDGPAFLAQPS--EEFSVSPMKKSRSQPQPKKEPASHSASSKPRGAE---------------ATAX-XAAPGGASSGR--PEASKVSDAQKAGTKDKLNRKERVKMQRLRGQSGIGADFRSWKTDEEMRMRQQFD 144          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A7S2FM24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM24_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.520e-15
Identity = 58/148 (39.19%), Postives = 72/148 (48.65%), Query Frame = -2
Query:   54 SGLLPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNVSTSSSTLSSANPGGSSNLNGYGNKRVQGAGAATAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 497
            S LLPSV+DLF+ T  P FL+ P     F V  M+K K                       L G G+          +V  K      A P  P + KK    G++  +K   KERVK QR+KGQ+GIG DFRVW+S+ EM MRQQYD
Sbjct:   66 SQLLPSVNDLFAGTSDPSFLAVPTKEDSFTVAPMKKRK-----------------------LGGLGSNESAPEKKNDSVKRKSHAPPRAAPT-PQSVKKHVPSGRERKEKPDRKERVKQQRMKGQAGIGEDFRVWRSETEMAMRQQYD 189          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A7S3XNJ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ5_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 1.500e-14
Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = -2
Query:   54 LPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNVSTSSSTLSSANPGGSSNLNGYGNKRVQGAGAATAV----------GVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 488
            LPSVDDLF++T GPDFLS+    +EF+  +++++   K+    +   L                K+V  A AA+ V            K  K  S+ P  P  DKK     +    K +AK+RVK QRLKGQ+GIG DFR WK++ EM MRQQ+D
Sbjct:   78 LPSVDDLFASTSGPDFLSS-NVSREFIAPSLKRKSLAKDPEEVARQKLEKK-------------KKVYSATAASGVTSTEQKAIKFNQKEEKKASSAP-NPFMDKK-----EKEARKQSAKDRVKNQRLKGQAGIGEDFRQWKTEEEMRMRQQFD 212          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A1V9YGD8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.210e-13
Identity = 61/150 (40.67%), Postives = 80/150 (53.33%), Query Frame = -2
Query:   54 LPSVDDLFSNTGGPDFLSTPGAG--KEFVVEAMRKEKAEKNNVSTSSSTLSSANPG--GSSNLNGYGNKRVQGAGAAT-AVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 488
            LPSVD++F+ T  P FL  P     + F +E   KE+  +         L +  P   G   +N    +   G  + T A+ VKR +G  A   G  A  K  A G    +KV+ K+RVK QRL+GQSGIGSDFR WKS+ EM +RQQYD
Sbjct:   35 LPSVDEVFAATQRPTFLDKPTVASMEVFDIEERPKERDNEEASGDLEQPLENDEPASPGPRIVNSI--EVFPGLSSPTRAMPVKRQRGQPASLNGASAGTKRKAEGNKDGNKVSGKDRVKAQRLRGQSGIGSDFRGWKSETEMQLRQQYD 182          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A6G0WZM1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZM1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.580e-11
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = -2
Query:   54 TDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 176
            TDK + KERVK QRLKGQSGIGSDFR WKSD EM MRQ++D
Sbjct:  129 TDKSSGKERVKQQRLKGQSGIGSDFRTWKSDTEMKMRQEFD 169          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A1V9YF54_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YF54_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.190e-10
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = -2
Query:   54 ATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 179
            A  K T KERVK QRLKGQSGIG+DFR WKS+ EM +RQQYD
Sbjct:  120 AETKNTGKERVKAQRLKGQSGIGNDFRTWKSETEMQLRQQYD 161          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: T0Q9L0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q9L0_SAPDV)

HSP 1 Score: 65.9 bits (159), Expect = 1.170e-9
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = -2
Query:   54 ATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 179
            A DK + K+RVK QRLKGQSGIGSDFR WKS+ EM +RQQYD
Sbjct:  158 ADDKPSGKDRVKAQRLKGQSGIGSDFRGWKSETEMQLRQQYD 199          
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: D0NJ84_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NJ84_PHYIT)

HSP 1 Score: 63.9 bits (154), Expect = 1.700e-9
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = -2
Query:   54 DKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 173
            +K   KERVK QRLKGQ+GIGSDFRVWKS+ EM +RQQ+D
Sbjct:   94 EKKDGKERVKNQRLKGQAGIGSDFRVWKSETEMALRQQFD 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJY2_9PHAE4.750e-3554.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8J9_ECTSI2.330e-2576.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2W639_9STRA7.240e-1940.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FM24_9STRA9.520e-1539.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XNJ5_HETAK1.500e-1438.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9YGD8_9STRA3.210e-1340.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0WZM1_9STRA9.580e-1178.05Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YF54_9STRA8.190e-1073.81Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0Q9L0_SAPDV1.170e-973.81Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
D0NJ84_PHYIT1.700e-972.50Uncharacterized protein n=2 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11860contigH-elongata_contig11860:3455..4124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.287154-CDS-H-elongata_contig11860:3454..41231622929693.287154-CDS-H-elongata_contig11860:3454..4123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 3455..4123 +
1691679121.2729-CDS-H-elongata_contig11860:3454..41231691679121.2729-CDS-H-elongata_contig11860:3454..4123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 3455..4123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11860.1435.1prot_H-elongata_contig11860.1435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11860 3455..4123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11860.1435.1

>prot_H-elongata_contig11860.1435.1 ID=prot_H-elongata_contig11860.1435.1|Name=mRNA_H-elongata_contig11860.1435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
PNKNVNRRSAKEKSMTNQSYCWRMVISRSLFHTRKSDPIPDCPFSRCPFT
LSLAVTLSVASFPLAPPFLSAGGPAGPADPPFGLFTPTAVAAPAPCTRLF
PYPLRLLLPPGFAEDKVDEEVETLFFSAFSFRMASTTNSLPAPGVLRKSG
PPVLLKRSSTEGSNPDPPPLQFKRSSPRVFPTSSFSFSLSPLSLPLSLSS
PSLPVPEEGFSAPLLSVLPDVGA
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mRNA from alignment at H-elongata_contig11860:3455..4124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11860.1435.1 ID=mRNA_H-elongata_contig11860.1435.1|Name=mRNA_H-elongata_contig11860.1435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig11860:3455..4124+ (Himanthalia elongata Himel1 dioecious)
CCAAATAAAAATGTCAACAGACGATCAGCCAAGGAGAAATCTATGACGAA TCAGTCGTACTGCTGGCGCATGGTCATCTCGAGGTCGCTTTTCCACACAC GAAAGTCCGACCCTATCCCAGATTGCCCCTTCAGTCGCTGCCCCTTCACT CTTTCCTTGGCCGTTACTTTGTCAGTTGCGTCTTTTCCCCTTGCGCCTCC CTTTTTATCAGCAGGCGGTCCGGCAGGTCCCGCAGACCCTCCTTTCGGCC TCTTTACCCCGACAGCAGTTGCCGCGCCTGCGCCCTGCACCCGCTTGTTT CCGTACCCGTTGAGGTTGCTGCTTCCGCCCGGGTTTGCCGAAGACAAGGT CGACGAGGAGGTCGAAACATTGTTTTTCTCCGCTTTCTCCTTTCGCATGG CCTCGACAACGAACTCTTTGCCCGCTCCGGGGGTGCTCAGAAAATCAGGC CCTCCGGTGTTGCTGAAGAGATCGTCCACTGAAGGGAGCAACCCCGACCC ACCGCCGCTACAGTTCAAGCGTTCTTCTCCGCGGGTCTTCCCCACCTCCT CTTTCTCCTTCTCGCTATCGCCACTATCGCTACCGCTTTCGCTATCATCG CCGTCGCTTCCCGTACCGGAGGAGGGATTTTCGGCGCCCCTGCTTTCGGT CCTTCCGGATGTTGGGGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig11860:3455..4124+

>mRNA_H-elongata_contig11860.1435.1 ID=mRNA_H-elongata_contig11860.1435.1|Name=mRNA_H-elongata_contig11860.1435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig11860:3455..4124+ (Himanthalia elongata Himel1 dioecious)
CCAAATAAAAATGTCAACAGACGATCAGCCAAGGAGAAATCTATGACGAA
TCAGTCGTACTGCTGGCGCATGGTCATCTCGAGGTCGCTTTTCCACACAC
GAAAGTCCGACCCTATCCCAGATTGCCCCTTCAGTCGCTGCCCCTTCACT
CTTTCCTTGGCCGTTACTTTGTCAGTTGCGTCTTTTCCCCTTGCGCCTCC
CTTTTTATCAGCAGGCGGTCCGGCAGGTCCCGCAGACCCTCCTTTCGGCC
TCTTTACCCCGACAGCAGTTGCCGCGCCTGCGCCCTGCACCCGCTTGTTT
CCGTACCCGTTGAGGTTGCTGCTTCCGCCCGGGTTTGCCGAAGACAAGGT
CGACGAGGAGGTCGAAACATTGTTTTTCTCCGCTTTCTCCTTTCGCATGG
CCTCGACAACGAACTCTTTGCCCGCTCCGGGGGTGCTCAGAAAATCAGGC
CCTCCGGTGTTGCTGAAGAGATCGTCCACTGAAGGGAGCAACCCCGACCC
ACCGCCGCTACAGTTCAAGCGTTCTTCTCCGCGGGTCTTCCCCACCTCCT
CTTTCTCCTTCTCGCTATCGCCACTATCGCTACCGCTTTCGCTATCATCG
CCGTCGCTTCCCGTACCGGAGGAGGGATTTTCGGCGCCCCTGCTTTCGGT
CCTTCCGGATGTTGGGGCTCCAAATAAAAATGTCAACAGACGATCAGCCA
AGGAGAAATCTATGACGAATCAGTCGTACTGCTGGCGCATGGTCATCTCG
AGGTCGCTTTTCCACACACGAAAGTCCGACCCTATCCCAGATTGCCCCTT
CAGTCGCTGCCCCTTCACTCTTTCCTTGGCCGTTACTTTGTCAGTTGCGT
CTTTTCCCCTTGCGCCTCCCTTTTTATCAGCAGGCGGTCCGGCAGGTCCC
GCAGACCCTCCTTTCGGCCTCTTTACCCCGACAGCAGTTGCCGCGCCTGC
GCCCTGCACCCGCTTGTTTCCGTACCCGTTGAGGTTGCTGCTTCCGCCCG
GGTTTGCCGAAGACAAGGTCGACGAGGAGGTCGAAACATTGTTTTTCTCC
GCTTTCTCCTTTCGCATGGCCTCGACAACGAACTCTTTGCCCGCTCCGGG
GGTGCTCAGAAAATCAGGCCCTCCGGTGTTGCTGAAGAGATCGTCCACTG
AAGGGAGCAACCCCGACCCACCGCCGCTACAGTTCAAGCGTTCTTCTCCG
CGGGTCTTCCCCACCTCCTCTTTCTCCTTCTCGCTATCGCCACTATCGCT
ACCGCTTTCGCTATCATCGCCGTCGCTTCCCGTACCGGAGGAGGGATTTT
CGGCGCCCCTGCTTTCGGTCCTTCCGGATGTTGGGGCT
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