mRNA_H-elongata_contig67261.14335.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67261.14335.1
Unique NamemRNA_H-elongata_contig67261.14335.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67261.14335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67261contigH-elongata_contig67261:2812..3335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size482
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67261.14335.1prot_H-elongata_contig67261.14335.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67261 2885..3193 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.5741103-UTR-H-elongata_contig67261:2811..28841622931063.5741103-UTR-H-elongata_contig67261:2811..2884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67261 2812..2884 +
1691679682.93446-UTR-H-elongata_contig67261:2811..28841691679682.93446-UTR-H-elongata_contig67261:2811..2884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67261 2812..2884 +
1622931063.621137-UTR-H-elongata_contig67261:3193..33351622931063.621137-UTR-H-elongata_contig67261:3193..3335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67261 3194..3335 +
1691679682.960311-UTR-H-elongata_contig67261:3193..33351691679682.960311-UTR-H-elongata_contig67261:3193..3335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67261 3194..3335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.5895932-CDS-H-elongata_contig67261:2884..31131622931063.5895932-CDS-H-elongata_contig67261:2884..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67261 2885..3113 +
1691679682.9424107-CDS-H-elongata_contig67261:2884..31131691679682.9424107-CDS-H-elongata_contig67261:2884..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67261 2885..3113 +
1622931063.6081057-CDS-H-elongata_contig67261:3155..31931622931063.6081057-CDS-H-elongata_contig67261:3155..3193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67261 3156..3193 +
1691679682.950793-CDS-H-elongata_contig67261:3155..31931691679682.950793-CDS-H-elongata_contig67261:3155..3193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67261 3156..3193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67261.14335.1

>prot_H-elongata_contig67261.14335.1 ID=prot_H-elongata_contig67261.14335.1|Name=mRNA_H-elongata_contig67261.14335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MSRGGREEVLAQVSWMAGGVFPVGPGALPTLLPTPPPLCHRNCNRNWTWR
RRRRTFRHPSAPISVCGRGPRAERSRSLVLCYNACLSF*
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mRNA from alignment at H-elongata_contig67261:2812..3335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67261.14335.1 ID=mRNA_H-elongata_contig67261.14335.1|Name=mRNA_H-elongata_contig67261.14335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=524bp|location=Sequence derived from alignment at H-elongata_contig67261:2812..3335+ (Himanthalia elongata Himel1 dioecious)
CGACACTTCCGTTGGAACTGGAGCAGCTGCCACCGGAAAACCTTTAGTGG
CGGAGCAGGAGCAGGAGAAGCGAATGTCGCGTGGTGGGCGTGAAGAGGTG
CTCGCGCAAGTTTCGTGGATGGCCGGGGGCGTTTTCCCGGTGGGTCCAGG
TGCCTTGCCTACGCTCTTACCTACCCCTCCGCCACTCTGTCACAGAAACT
GCAATCGGAACTGGACCTGGAGGCGTCGAAGACGTACGTTTAGGCACCCG
TCGGCCCCAATATCGGTATGTGGACGGGGGCCCAGGGCTGAGAGGTCTCG
AAGCCGCATGAATTGTGACTTTGTGTTGGATATTCGTTGATTTTGTTTGG
TTTTGTGCTACAATGCTTGCCTGAGTTTCTAATACTATTTTTTTGTTATA
ATGCGGCGAGGGGGGCGCATTTTATCTGTCCTGGGCGGTATTTATTTTCT
AGTAGTCCAGTTTCTGCTATTGTTATCGTAATTAATTTTTATTTAAAAGA
CTTTAGGCTCATTCTAACTCTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig67261:2812..3335+

>mRNA_H-elongata_contig67261.14335.1 ID=mRNA_H-elongata_contig67261.14335.1|Name=mRNA_H-elongata_contig67261.14335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig67261:2812..3335+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGTGGTGGGCGTGAAGAGGTGCTCGCGCAAGTTTCGTGGATGGC
CGGGGGCGTTTTCCCGGTGGGTCCAGGTGCCTTGCCTACGCTCTTACCTA
CCCCTCCGCCACTCTGTCACAGAAACTGCAATCGGAACTGGACCTGGAGG
CGTCGAAGACGTACGTTTAGGCACCCGTCGGCCCCAATATCGGTATGTGG
ACGGGGGCCCAGGGCTGAGAGGTCTCGAAATGTCGCGTGGTGGGCGTGAA
GAGGTGCTCGCGCAAGTTTCGTGGATGGCCGGGGGCGTTTTCCCGGTGGG
TCCAGGTGCCTTGCCTACGCTCTTACCTACCCCTCCGCCACTCTGTCACA
GAAACTGCAATCGGAACTGGACCTGGAGGCGTCGAAGACGTACGTTTAGG
CACCCGTCGGCCCCAATATCGGTATGTGGACGGGGGCCCAGGGCTGAGAG
GTCTCGAAGTTTGGTTTTGTGCTACAATGCTTGCCTGAGTTTCTAAGTTT
GGTTTTGTGCTACAATGCTTGCCTGAGTTTCTAA
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