mRNA_H-elongata_contig67249.14333.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67249.14333.1
Unique NamemRNA_H-elongata_contig67249.14333.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67249.14333.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 7.790e-9
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  358 IRILLREVEVHSWPPNWRHEVQCTRVRVTVI 450
            IR++LREVEVH+WPPNWRHEVQC  VRVTVI
Sbjct: 4070 IRLVLREVEVHAWPPNWRHEVQCPGVRVTVI 4100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67249.14333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMF5_ECTSI7.790e-983.87FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67249contigH-elongata_contig67249:609..1578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue7.2e-08
Seed eggNOG ortholog2880.D7FMF5
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size451
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.477223-CDS-H-elongata_contig67249:609..6421622931063.477223-CDS-H-elongata_contig67249:609..642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67249 610..642 -
1691679682.881739-CDS-H-elongata_contig67249:609..6421691679682.881739-CDS-H-elongata_contig67249:609..642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67249 610..642 -
1622931063.4929888-CDS-H-elongata_contig67249:1161..15781622931063.4929888-CDS-H-elongata_contig67249:1161..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67249 1162..1578 -
1691679682.8960958-CDS-H-elongata_contig67249:1161..15781691679682.8960958-CDS-H-elongata_contig67249:1161..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67249 1162..1578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67249.14333.1prot_H-elongata_contig67249.14333.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67249 610..1578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67249.14333.1

>prot_H-elongata_contig67249.14333.1 ID=prot_H-elongata_contig67249.14333.1|Name=mRNA_H-elongata_contig67249.14333.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
QTPPLQSTLTSPSPSPSPMVLSSARWGKESNESDDGRGRRSPAAMKVWAS
FSGRDTRAGYGAENGASGVDGGVLSRQGRQRRDRRQLQQQQQAGFGMNGS
GKRDAEGAGSSGSGYPTKKIRILLREVEVHSWPPNWRHEVQCTRVRVTVI
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mRNA from alignment at H-elongata_contig67249:609..1578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67249.14333.1 ID=mRNA_H-elongata_contig67249.14333.1|Name=mRNA_H-elongata_contig67249.14333.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=970bp|location=Sequence derived from alignment at H-elongata_contig67249:609..1578- (Himanthalia elongata Himel1 dioecious)
CAGACACCTCCGCTGCAATCAACGTTGACATCACCGTCGCCGTCGCCATC
GCCGATGGTCCTTTCTTCCGCGCGCTGGGGCAAGGAAAGCAATGAAAGCG
ATGACGGCCGCGGAAGACGATCGCCCGCTGCGATGAAAGTGTGGGCGTCG
TTCTCCGGGAGGGACACAAGAGCCGGTTACGGTGCGGAGAATGGCGCCTC
CGGGGTGGATGGCGGAGTGCTCTCGAGGCAGGGGCGACAGCGGCGGGATC
GTCGACAACTCCAACAGCAGCAACAGGCAGGGTTCGGTATGAATGGAAGT
GGCAAGCGAGACGCCGAGGGTGCTGGCAGCAGTGGCAGCGGCTACCCGAC
GAAGAAGATCCGGATTTTGCTTAGGGAGGTCGAGGTGCACTCATGGCCTC
CCAACTGGAGACACGAGGTAGATATATGTATATATATATATATATATAAC
TCTATTCATATAAATATACGCCGTATGCAGCATACTTAAGTATGCGTTGG
CGAAAGGTCGTTGCTAACTGTCATAAAAATACGTTCGCCACGATTTCTTG
CGGTTTTAAGCAGGTGCCCGCTTTGTTACTATACACTTAGAGTTTTAATA
CAGGCACTATTTATAGTAACAGTAACAGTAACAGTTTTCTGTACTCTCGA
CATAGCTAGCTCTATACCTTGTACTGCTGCGGCTCGGTCGAGGGAGGTGA
ACATCGTTCGGAGGACCCCCAAAGTAGCGCGAACCCCGACGGGCAAAAGA
TCGGGGTGTTTTTCTTCTTCTCACTTTGCTTACTTTCCTCCCCCTCCTTC
CTCCTCCTCCTCCTCCTCCTCCCGTTTTTATCCCCTCTGTTTTCCCCTTT
TTTCCTCTTTTATTTACTATAATAATATGGAATCAAATTATTGTCAATAG
TTCGCCCCCCCCCCCCACCCGCCTCCATATCACCAGGTTCAGTGCACCCG
CGTGCGAGTGACCGTCATCG
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Coding sequence (CDS) from alignment at H-elongata_contig67249:609..1578-

>mRNA_H-elongata_contig67249.14333.1 ID=mRNA_H-elongata_contig67249.14333.1|Name=mRNA_H-elongata_contig67249.14333.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig67249:609..1578- (Himanthalia elongata Himel1 dioecious)
CAGACACCTCCGCTGCAATCAACGTTGACATCACCGTCGCCGTCGCCATC
GCCGATGGTCCTTTCTTCCGCGCGCTGGGGCAAGGAAAGCAATGAAAGCG
ATGACGGCCGCGGAAGACGATCGCCCGCTGCGATGAAAGTGTGGGCGTCG
TTCTCCGGGAGGGACACAAGAGCCGGTTACGGTGCGGAGAATGGCGCCTC
CGGGGTGGATGGCGGAGTGCTCTCGAGGCAGGGGCGACAGCGGCGGGATC
GTCGACAACTCCAACAGCAGCAACAGGCAGGGTTCGGTATGAATGGAAGT
GGCAAGCGAGACGCCGAGGGTGCTGGCAGCAGTGGCAGCGGCTACCCGAC
GAAGAAGATCCGGATTTTGCTTAGGGAGGTCGAGGTGCACTCATGGCCTC
CCAACTGGAGACACGAGCAGACACCTCCGCTGCAATCAACGTTGACATCA
CCGTCGCCGTCGCCATCGCCGATGGTCCTTTCTTCCGCGCGCTGGGGCAA
GGAAAGCAATGAAAGCGATGACGGCCGCGGAAGACGATCGCCCGCTGCGA
TGAAAGTGTGGGCGTCGTTCTCCGGGAGGGACACAAGAGCCGGTTACGGT
GCGGAGAATGGCGCCTCCGGGGTGGATGGCGGAGTGCTCTCGAGGCAGGG
GCGACAGCGGCGGGATCGTCGACAACTCCAACAGCAGCAACAGGCAGGGT
TCGGTATGAATGGAAGTGGCAAGCGAGACGCCGAGGGTGCTGGCAGCAGT
GGCAGCGGCTACCCGACGAAGAAGATCCGGATTTTGCTTAGGGAGGTCGA
GGTGCACTCATGGCCTCCCAACTGGAGACACGAGGTTCAGTGCACCCGCG
TGCGAGTGACCGTCATCGTTCAGTGCACCCGCGTGCGAGTGACCGTCATC
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