mRNA_H-elongata_contig672.14328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig672.14328.1
Unique NamemRNA_H-elongata_contig672.14328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig672.14328.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.690e-20
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   13 ELALHLCGSSTNTWCKVGGLKVYPSLPAASYNWEMLYADTGK-----LFLHFNGRYKHVIAGFSV---PEKCNPSGHNHVNSFE 240
            +LAL LCGSSTNTWC++GGL VYPS P+  Y +E+L   TG+     LFLH+ G  KHVI G S    PE CN  G  H N FE
Sbjct:    3 QLALELCGSSTNTWCEMGGLAVYPSEPSPWYEFELLKRGTGEGSGPTLFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFFE 86
[Close]
BLAST of mRNA_H-elongata_contig672.14328.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.310e-16
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:    1 RIITELALHLCGSSTNTWCKVGGLKVYPSLPAASYNWEMLYADTG----KLFLHFNGRYKHVIAGFS--VPEKCNPSGHNHVNSFETL 246
            R++  LA+ LCGS  N WC++GG++V+P  PA SY +E+L   T     +LFLHF GR KH+I G    +P KC   G  H   F  L
Sbjct:  128 RMVPSLAIELCGSENNPWCQLGGVEVFPHPPAPSYEFELLNISTPTGRPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDL 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig672.14328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLX3_9PHAE9.690e-2054.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L183_9PHAE2.310e-1644.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig672contigH-elongata_contig672:2400..4312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size252
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig672.14328.1prot_H-elongata_contig672.14328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig672 2402..4312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.9020884-CDS-H-elongata_contig672:2401..24941622931062.9020884-CDS-H-elongata_contig672:2401..2494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 2402..2494 -
1691679682.5344028-CDS-H-elongata_contig672:2401..24941691679682.5344028-CDS-H-elongata_contig672:2401..2494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 2402..2494 -
1622931062.9155805-CDS-H-elongata_contig672:2790..28931622931062.9155805-CDS-H-elongata_contig672:2790..2893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 2791..2893 -
1691679682.544864-CDS-H-elongata_contig672:2790..28931691679682.544864-CDS-H-elongata_contig672:2790..2893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 2791..2893 -
1622931062.9291372-CDS-H-elongata_contig672:4259..43121622931062.9291372-CDS-H-elongata_contig672:4259..4312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 4260..4312 -
1691679682.5544758-CDS-H-elongata_contig672:4259..43121691679682.5544758-CDS-H-elongata_contig672:4259..4312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 4260..4312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig672.14328.1

>prot_H-elongata_contig672.14328.1 ID=prot_H-elongata_contig672.14328.1|Name=mRNA_H-elongata_contig672.14328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
RIITELALHLCGSSTNTWCKVGGLKVYPSLPAASYNWEMLYADTGKLFLH
FNGRYKHVIAGFSVPEKCNPSGHNHVNSFETLD
back to top

mRNA from alignment at H-elongata_contig672:2400..4312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig672.14328.1 ID=mRNA_H-elongata_contig672.14328.1|Name=mRNA_H-elongata_contig672.14328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1913bp|location=Sequence derived from alignment at H-elongata_contig672:2400..4312- (Himanthalia elongata Himel1 dioecious)
AGGATCATTACGGAACTCGCCCTTCACCTGTGTGGAAGCTCAACGAACAC
ATGGTAGGAAAGTGTTTTTAGCACACTCCGAAAAGGAATATCGCGAGACT
TTAAACGTGTAGGCCATGAAGTTGTTTCCGAACTAGATGTGATATTGATG
GAATTATTGATAAAAAATATATATATATATATATATATGGTGCCCTAGAT
ACATGTAGGGCTATAATTTAGCCATCTTCACTTGTAATAAAAAAATACTT
CCCTACAAGAAAGAAATTTTCGAGATAACTAGAAGGACACGTACTACTCA
AAAAAAGGTTATTACTATGAATTATATAGATAGCGCGGTTCGTTGAAGGC
GGTTGAAAACAGCGTACCACCTGCTAGGATATCATATAGGCTTTTCCTAA
GAAGTAACATTAAAAACACATTGCATTCCAAACTTAATGAGAGACCACTT
GCACATTTTTGAAAGGCTTAACTTGTTTTAAAAGAACTGCGGAGTTAGCG
CCTGGTTCTAAAACTCAATCATGGCCAGCTAAGCAGTAAAACTGACAAAA
CCCCAAAAACTTTTTGCGATGAGAAACATAGCGCGGAATTGATTACGACA
AAGATAATAATATAAAAACGGCATAAAACAACGCCGGCCGGTATTCGACT
CCAGTTTTTTGCTCGATCACCCTTACTTTAGATGGCGTCCGTTTAGACTA
GGGGGCTCCGGTGGAGCAACAGTCGGCATCATTATACAAAGGCGCCCTTT
TCCAATCCCATCTCCTGCCCCACCTTTATACTCGCTTTCTCTCATGTGGG
CGTGGCAGTAGTACCCCGAAACCAGTCTAAACAAACCTCGCCGGCCTAAA
TTGAGCCAGATATCGACCTTCTTCCCCGTTACTCCCATTGTATTTAGCTT
CGCGTTTCTCATTTAACATTTTCTCGAACGAAGCTAAACACGTTTCGAAT
TTGTTAAGTAAATACTGGAAATATATTTCGGCAACTGTATGTGGTACACA
AACGAACAGTAATGTCCAAAGAAATAAGCGTACATGAACGTACGAACCCT
AAATCAGAGGACGCGAAGAACAAACAACAGTGTTTTCGAAATAAGCCAAA
CATGAATGCAAATACAAAATACGTTTGCGTGCGCTGAGTATTACGATGTG
GCGAAGGAAGCGATGAAATTATGAAAAACGCATTCCGTCGCCGCTGTACG
GGATGACGGTAGTTATTATTGCCGTTTACCCGAGGCAGACGAACTCCCAC
CGTGAATACCACATTTATTTTTAAACAATGAAACCATCTGGTTTGTTCTA
AACACTTCGCCACACAGAGGTGCATGCTATTTGGGAATGAACGTCCTTGG
ACATTACTGTAATAATAATGTTTATATTGGGTGCCCTCACTGTCGTCGCG
CCTTCTTTGTCACCGGCAGGTGTAAAGTCGGCGGACTGAAAGTTTATCCC
TCGCTGCCTGCCGCTAGCTACAACTGGGAGATGCTGTACGCCGACACGGG
AAAGCTTTTTCTGCATTTTAACGTAACAAATCACATTAAATATCTCAGAT
TGGAGAGTTGTGTTTTTTTATAGGATTTACACTGGATGGAGAACATTTAG
GAGTGGAACCGGAAAGCAGTAACACGTCTGATCTGTCATCATATTTTTTA
AGCAAAACATCAAAACAAATGAATTGTTTGTTATCCTCCTATGATTTAGA
TTGTAAGCTACTTTGAGCACGATTCTGTTTTCGCTTCCTCTCTTCACAGC
CACGACCGAGGAGTCAAAATATAATAGCAAGACGGTATTTCCTTACCATG
TCGCATTGATTGCCGCAGGGGAGATACAAGCACGTAATAGCAGGTTTTAG
CGTTCCTGAGAAATGCAACCCTTCCGGACACAATCACGTCAATTCTTTCG
AGACACTTGATCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig672:2400..4312-

>mRNA_H-elongata_contig672.14328.1 ID=mRNA_H-elongata_contig672.14328.1|Name=mRNA_H-elongata_contig672.14328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig672:2400..4312- (Himanthalia elongata Himel1 dioecious)
AGGATCATTACGGAACTCGCCCTTCACCTGTGTGGAAGCTCAACGAACAC
ATGAGGATCATTACGGAACTCGCCCTTCACCTGTGTGGAAGCTCAACGAA
CACATGGTGTAAAGTCGGCGGACTGAAAGTTTATCCCTCGCTGCCTGCCG
CTAGCTACAACTGGGAGATGCTGTACGCCGACACGGGAAAGCTTTTTCTG
CATTTTAACGTGTAAAGTCGGCGGACTGAAAGTTTATCCCTCGCTGCCTG
CCGCTAGCTACAACTGGGAGATGCTGTACGCCGACACGGGAAAGCTTTTT
CTGCATTTTAACGGGAGATACAAGCACGTAATAGCAGGTTTTAGCGTTCC
TGAGAAATGCAACCCTTCCGGACACAATCACGTCAATTCTTTCGAGACAC
TTGATGGGAGATACAAGCACGTAATAGCAGGTTTTAGCGTTCCTGAGAAA
TGCAACCCTTCCGGACACAATCACGTCAATTCTTTCGAGACACTTGAT
back to top