mRNA_H-elongata_contig67160.14325.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY) HSP 1 Score: 55.1 bits (131), Expect = 4.110e-7 Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 61 SRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFE 204
+RRT+H+DIKHH +RD + IHI+Y+ S EQ AD LTK + + FE
Sbjct: 930 TRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE) HSP 1 Score: 54.3 bits (129), Expect = 7.250e-7 Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFE 204
A+NR +S+R +H+DIKHH +R+ + VI + YV + EQ+AD LTK +D ++FE
Sbjct: 281 ARNRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADILTKGLDKQSFE 334
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A392RX51_9FABA (Peroxidase 4-like (Fragment) n=2 Tax=Trifolium medium TaxID=97028 RepID=A0A392RX51_9FABA) HSP 1 Score: 49.3 bits (116), Expect = 4.870e-6 Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFEK 207
+KN RT+H+DI+HH +RD + +++ +E+V + EQ +D TK +D FEK
Sbjct: 28 SKNPIQHSRTKHIDIRHHFIRDFVEEKIVTLEHVATEEQLSDIFTKALDANQFEK 82
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A392LX79_9FABA (Gag-pol polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LX79_9FABA) HSP 1 Score: 52.0 bits (123), Expect = 4.970e-6 Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFEK 207
+KN RT+H+DI+HH +RD + V+ +E+V + EQ AD TK VD FEK
Sbjct: 591 SKNPIQHSRTKHIDIRHHFIRDLVEENVVTLEHVSTDEQLADIFTKAVDANQFEK 645
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A2K3P4Z0_TRIPR (Retrotransposon-related protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3P4Z0_TRIPR) HSP 1 Score: 51.6 bits (122), Expect = 6.910e-6 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFEK 207
+KN RT+H+DI+HH +RD + +++ +E++ S EQ AD TK +D FEK
Sbjct: 1141 SKNPIQHSRTKHIDIRHHFIRDLVEEKIVTLEHIASEEQLADIFTKALDANQFEK 1195
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A6H5H5Y6_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H5Y6_9HEMI) HSP 1 Score: 48.5 bits (114), Expect = 8.170e-6 Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1
Query: 67 RTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFE 204
RT+H+D++HH VR+ I + I +EY+ S E AD+LTK +D FE
Sbjct: 30 RTKHIDVRHHFVRERIQKKEIELEYIPSAEMVADSLTKPLDAEKFE 75
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR) HSP 1 Score: 48.5 bits (114), Expect = 1.020e-5 Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFEK 207
+KN RT+H+DI+HH +RD + V+ +E++ + EQ AD TK +D FEK
Sbjct: 22 SKNPIQHSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEK 76
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A392MTL3_9FABA (Putative gag-pol polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MTL3_9FABA) HSP 1 Score: 50.4 bits (119), Expect = 1.620e-5 Identity = 23/55 (41.82%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFEK 207
+KN RT+H+DI+HH +RD + +V+ +E++ + EQ AD LTK +D FE+
Sbjct: 236 SKNPVQHSRTKHIDIRHHYIRDLVEDKVVTLEHIATEEQLADILTKALDANRFEE 290
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A5A7SGW5_CUCME (Copia protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SGW5_CUCME) HSP 1 Score: 50.4 bits (119), Expect = 1.680e-5 Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFE 204
+KN RT+H+DIKHH +R+ I G V+ +++VRS Q D TK +DV +FE
Sbjct: 107 SKNPVQHSRTKHIDIKHHFIRELIEGEVVVLKHVRSSLQLVDIFTKPLDVSSFE 160
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Match: A0A5D3DEL4_CUCME (Integrase catalytic domain-containing protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DEL4_CUCME) HSP 1 Score: 50.4 bits (119), Expect = 1.760e-5 Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 43 AKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSGEQHADALTKYVDVRTFE 204
+KN RT+H+DI+HH +R+ + +I +E+V+S Q AD TK +DV TFE
Sbjct: 860 SKNPVQHSRTKHIDIRHHFIRELVEANIISLEHVQSAFQLADIFTKPLDVATFE 913 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67160.14325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67160.14325.1 >prot_H-elongata_contig67160.14325.1 ID=prot_H-elongata_contig67160.14325.1|Name=mRNA_H-elongata_contig67160.14325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp PLRYTRTTKARSRWAKNRFSSRRTRHLDIKHHIVRDAIYGRVIHIEYVRSback to top mRNA from alignment at H-elongata_contig67160:926..1135- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67160.14325.1 ID=mRNA_H-elongata_contig67160.14325.1|Name=mRNA_H-elongata_contig67160.14325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig67160:926..1135- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67160:926..1135- >mRNA_H-elongata_contig67160.14325.1 ID=mRNA_H-elongata_contig67160.14325.1|Name=mRNA_H-elongata_contig67160.14325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig67160:926..1135- (Himanthalia elongata Himel1 dioecious)back to top |