prot_H-elongata_contig6715.14324.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6715.14324.1
Unique Nameprot_H-elongata_contig6715.14324.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length218
Homology
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY)

HSP 1 Score: 157 bits (398), Expect = 1.010e-40
Identity = 89/215 (41.40%), Postives = 128/215 (59.53%), Query Frame = 0
Query:    1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 215
            V RP+++ VVG K ++K K G DG++EKYK RLVA GF QVED+ Y E ++PT   ++IR  LA AA  D E+   D K AFL  D+DEE+Y+  P  + D P+   RL+KA+Y L QA R W  K   +   + F+++ AD  VF K V+G   V+V ++VDD+L  A     I+     L +KF + D+G+  + +   I R+R  R L + Q
Sbjct:  984 VERPRNRKVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEIHQMDVKSAFLNGDLDEEIYMACPPGFEDRPDIVWRLRKALYGLKQASRQWYKKIRAEFESLGFKRSDADHGVFYKEVDGSL-VIVALYVDDMLIFADKVSAIDSVKASLKEKFDMTDLGEAHWVLNMEIIRDRPNRTLELSQ 1197          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 154 bits (388), Expect = 2.240e-39
Identity = 85/217 (39.17%), Postives = 134/217 (61.75%), Query Frame = 0
Query:    1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDD--ILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 215
            V RP+D+ ++G+K ++K K G DG+VEKYK RLVA GF QVE + Y E ++P   + SIR+ LA AA  D E+   D K AFL  +++EE+Y+++P  +    +A  RLKKA+Y L QA R W  K   ++  + F + +AD  VF K ++    ++ V +VDD  +L+ + D VT  +   +LG +F + D+G+V + +   +TRNR+ R + + Q
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAV-YVDDNMVLSDSLDLVTKTKS--DLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQ 1243          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 150 bits (380), Expect = 2.650e-38
Identity = 84/215 (39.07%), Postives = 127/215 (59.07%), Query Frame = 0
Query:    1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 215
            V +P+ + VVG K ++K K G DG +EKYK RLVA GF QVE + YT+ ++P     SIR  LA AA+ D ++   D K AFL  D+DEE+Y+  P  +     +  RL+K++Y L QA R W  K   +   + FE++ AD  +F KV  G   +++ ++VDD+L    D+ TI+ F   L ++F++ D+G  R+ +G  I R+R    L+I Q
Sbjct: 1024 VEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQ 1237          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 149 bits (375), Expect = 1.250e-37
Identity = 81/216 (37.50%), Postives = 126/216 (58.33%), Query Frame = 0
Query:    1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQH 216
            V RP+++ V+  K ++K K G DG++EKYK RLVA GF QVE L + E ++P     S+R  LA AA  D E+   D K AFL  D+DEE+Y+++P  +H       +L KA+Y L QAGR W  K   +   + F +  +D  VF K  +G   +++ ++VDD+L  + +   +     +L  +F++ D+G+ R+ +G  ITR+R  R L + QH
Sbjct:  961 VERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDGIL-LIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQH 1175          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 148 bits (373), Expect = 2.290e-37
Identity = 82/216 (37.96%), Postives = 126/216 (58.33%), Query Frame = 0
Query:    1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQH 216
            V RP+++ VV  K +++ K G DGK++KYK RLVA GF QVE + YT+ ++P     SIRM LA AA  D E+   D K AFL  D++EE+++E P  +        RL+K++Y L QA R W  K       + + ++ AD  VF K  +     VV V+VDD+L  AKD+  ++   +ELG  +++ D+G+ R+ +G  I  +R  + + + QH
Sbjct:  999 VERPRNRKVVDCKWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQQDKAHVWRLQKSLYGLKQASREWYKKVRALFESLGYSRSNADHSVFYKRGKDGDLTVVAVYVDDMLIFAKDRAAVDHIKLELGVPYEMSDLGEARWILGMEIIHDRARKTITLSQH 1214          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A392PD17_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A392PD17_9FABA)

HSP 1 Score: 137 bits (344), Expect = 3.890e-36
Identity = 77/203 (37.93%), Postives = 115/203 (56.65%), Query Frame = 0
Query:    4 PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDF-PEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRN 205
            PK K  +G K +YK K   DG +E+YK RLV  G  QVE + Y E ++P     ++R+ LA AA K  E+   D   AFL  D+ EE+Y++ P  +  F P    +LKK++Y L QA RCW  K    +    F Q+ +D  +F  +V  E ++VV+V+VDD++    D   I RF   L + F +KD+G ++Y++G  + RN
Sbjct:   10 PKGKKPLGCKWVYKIKHNSDGTIERYKARLVIFGNHQVEGIDYNETFAPVAKMVTVRLVLAVAAAKKWEIHQMDVHNAFLHGDLHEEVYMKPPPGFRTFQPGLVCKLKKSLYGLKQAPRCWFAKLSSALKKFGFRQSCSDYSLFTLLVH-EVQIVVLVYVDDLIVCGNDSAAIQRFKAYLSKCFHMKDLGTLKYFLGVEVARN 211          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 143 bits (361), Expect = 8.940e-36
Identity = 79/216 (36.57%), Postives = 124/216 (57.41%), Query Frame = 0
Query:    1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQH 216
            V RP+++ V+  K ++K K G DG++EKYK RLVA GF QVE L + E ++P     S+R  LA AA  D E+   D K AFL  D+DEE+Y+++P  +        +L KA+Y L QAGR W  K   +   + F +  +D  VF K  +G   +++ ++VDD+L  + +   +     +L  +F++ D+G+ R+ +G  I R+R  R L + QH
Sbjct:  638 VERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDGIL-LIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQH 852          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY)

HSP 1 Score: 142 bits (358), Expect = 2.260e-35
Identity = 81/216 (37.50%), Postives = 122/216 (56.48%), Query Frame = 0
Query:    1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQH 216
            V RP+D+ VV  K ++K K G DG+++KYK RLVA GF QVE + +TE ++P     S+R  LA AA  D E+   D K AFL  D++EE+Y+  P  +        RL+KA+Y L QA R W  +   +   + F   ++D  VF KV  G   V++ ++VDD+L  + D   +N     L  +F++ D+G+ R+ +   I R+R  R L + QH
Sbjct:  659 VERPRDRKVVDCKWVFKIKRGPDGEIKKYKARLVAKGFTQVEGIDFTETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLEEEIYMNAPPGFRLNANIIWRLRKALYGLKQASREWYKRIRAEFERLGFTMCESDHSVFYKVDNGTL-VIIAIYVDDMLILSDDIDAVNTLKANLKSRFEMTDLGEARWILSMEILRDRPRRLLELSQH 873          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A1Y1NHZ0_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NHZ0_PHOPY)

HSP 1 Score: 141 bits (356), Expect = 4.200e-35
Identity = 81/213 (38.03%), Postives = 128/213 (60.09%), Query Frame = 0
Query:    3 RPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 215
            +P DK ++ +K ++K K   +G + ++K RL A  F Q+E + + E +SPT    SIR+ L+ AA  D E+  FD K AFL  ++DEE+Y+  P   +  P    +LKK++Y L Q+ RCWN KF   +    F+Q  AD  V++  V+G+  V++++ VDD L   +DK+ +N    +L Q+FK+  +GD+ YY+G  I R+RK + L I Q
Sbjct:  802 KPPDKHIIDSKWVFKVKRTPEGNISRFKSRLCARAFSQIEGVDFKETFSPTTRYESIRILLSLAAKYDYEIIQFDVKTAFLYGELDEEIYMSPPNGANINPNLVCKLKKSLYGLKQSPRCWNRKFNSTLKNFNFQQCTADQCVYKGQVDGK-RVLLILFVDDGLIIGEDKLILNSIIEKLKQEFKIV-LGDLNYYVGLEIERDRKNKSLFIHQ 1012          
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: UPI0006A6DEFC (uncharacterized protein LOC106336398 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DEFC)

HSP 1 Score: 141 bits (355), Expect = 5.770e-35
Identity = 80/215 (37.21%), Postives = 121/215 (56.28%), Query Frame = 0
Query:    4 PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDF------PEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELN 212
            P  K  VG K ++  K   DG VE++K R+VA G+ Q+E L Y + +SP     ++R+ LA AA K   + H D   AFL  D+DEE+Y+++P+ Y +       P +  RL K++Y L QA   WN+K    +    F+Q  +D  +F K V+ +  +VV+V+VDDIL    D   + RF   L   FKL+D+G  +Y++G+ I RN+    LN
Sbjct:  736 PPGKQSVGCKWIHTIKYNPDGTVERHKSRVVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLAVAAAKQWSITHLDVSNAFLNGDLDEEIYMKLPQGYEELTGKKVPPNSVCRLHKSLYGLKQASHQWNHKLSHVITGDGFKQTHSDHSLFVKYVD-KVYLVVLVYVDDILIVGNDDDAVERFKTVLKSAFKLRDLGPAKYFLGFEIARNQSGISLN 949          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9XTU1_9APHY1.010e-4041.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A0C2WN23_AMAMK2.240e-3939.17Integrase catalytic domain-containing protein (Fra... [more]
A0A1M2VV58_TRAPU2.650e-3839.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G4V0_9APHY1.250e-3737.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SSE0_PYCCI2.290e-3737.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A392PD17_9FABA3.890e-3637.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H123_9APHY8.940e-3636.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H7NTQ9_9APHY2.260e-3537.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1NHZ0_PHOPY4.200e-3538.03Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
UPI0006A6DEFC5.770e-3537.21uncharacterized protein LOC106336398 n=1 Tax=Brass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..211
e-value: 9.0E-42
score: 143.4
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..178
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6715contigH-elongata_contig6715:6584..7237 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6715.14324.1mRNA_H-elongata_contig6715.14324.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6715 6584..7237 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6715.14324.1 ID=prot_H-elongata_contig6715.14324.1|Name=mRNA_H-elongata_contig6715.14324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKY
SPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYH
DFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVV
EGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGY
HITRNRKARELNIDQHL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like