mRNA_H-elongata_contig67142.14323.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67142.14323.1
Unique NamemRNA_H-elongata_contig67142.14323.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: D7FYI5_ECTSI (F-actin-capping protein subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI5_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 8.700e-84
Identity = 131/178 (73.60%), Postives = 145/178 (81.46%), Query Frame = 1
Query:    1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAA-GGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQNASGK 531
            DP LEEQRQALQ  LE YR S FS AEKSAACVF   GG  LVAYVSA KHNLRNWWSG+WSGRYT++VG  SAEVCG  +VRGHYFENGNIQLQTSK +  KT+ F   +SLAEA  A+I+ESESALHEGLE+MY++M  VTLR+MRR KPITAD FTWNVAKIRMRNTL Q A+ K
Sbjct:  126 DPALEEQRQALQEALEEYRASHFSVAEKSAACVFENDGGGGLVAYVSARKHNLRNWWSGTWSGRYTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVAFTSPKSLAEAAVAYIKESESALHEGLEEMYDRMPGVTLRSMRRTKPITADSFTWNVAKIRMRNTLAQAATSK 303          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A6H5KUK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK7_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 2.960e-82
Identity = 130/178 (73.03%), Postives = 145/178 (81.46%), Query Frame = 1
Query:    1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAA-GGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQNASGK 531
            DP LEEQRQALQ  LE YR S FS AEKSAACVF   GG  LVAYVSA KHNLRNWWSG+WSGRY+++VG  SAEVCG  +VRGHYFENGNIQLQTSK +  KT+ F   +SLAEA  A+I+ESESALHEGLE+MY++M  VTLR+MRR KPITAD FTWNVAKIRMRNTL Q A+ K
Sbjct:  219 DPALEEQRQALQEALEEYRASHFSVAEKSAACVFEKDGGGGLVAYVSARKHNLRNWWSGTWSGRYSVAVGAGSAEVCGAIAVRGHYFENGNIQLQTSKQVGAKTVAFTSPESLAEAAVAYIKESESALHEGLEEMYDRMPGVTLRSMRRTKPITADSFTWNVAKIRMRNTLAQAATNK 396          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A835Z114_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z114_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.930e-40
Identity = 83/172 (48.26%), Postives = 109/172 (63.37%), Query Frame = 1
Query:    1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISV--GEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTL 510
            D  LE  RQA ++ L+ YR S F  A  S+   FA     LV YVS    NLRNWWSGSW GRY ++   G+    + G  +V GHYFENGN+QL++S+++  +TL   D    A A+ A+I+  E  LH+ LE MY  MSD TL+ MRRA  +TAD+F+W +A+IRMRNTL
Sbjct:  112 DEGLEPLRQATEDALDAYRKSLFCAAANSSGA-FAMPDGKLVLYVSGEHLNLRNWWSGSWMGRYEVTGADGDGLVAITGHINVCGHYFENGNMQLRSSREVPQETLPSAD----AAAIIAWIRAKEGELHDSLEGMYGGMSD-TLKGMRRAVTVTADKFSWQIAQIRMRNTL 277          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A7S2WBT3_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBT3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.790e-36
Identity = 69/171 (40.35%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFA-AGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTL 510
            +P +E+ R A++  +E Y GS +S    S + VFA A    L   +S  K NLRN+WSG     +++++  ASA + G   VR HYFE GNIQLQ+ K ++  T+   D   LA+++   IQ +E +L +GLE MY  M+D T + MRRAK +T ++  WNV ++R+  TL
Sbjct:  130 NPEVEDYRAAVEQAVEAYVGSQYSEESLSTSAVFADASSTKLTVVISGEKLNLRNFWSGQLLSTWSVTISGASATISGDIKVRAHYFEEGNIQLQSKKSVAEATISASDPGGLAQSIVEHIQGAEGSLQDGLESMYSNMTDETFKAMRRAKAVTGNKMNWNVNEVRLNTTL 300          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A812X353_SYMMI (F-actin-capping protein subunit alpha n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X353_SYMMI)

HSP 1 Score: 127 bits (318), Expect = 1.160e-32
Identity = 71/166 (42.77%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRM 498
            D +LE +R ALQ  L+ Y  S F  AE++AA V+A  G  +VA +S  + NLRN+WSG WS  +T+      A + G   V  HYFE+GN+QLQT+K I+  T+ F       E + A I  SE  L   LEDMY  M++ T R MRR  P+   +  WNV  +RM
Sbjct:  117 DVLLESKRAALQAGLDAYVTSRFV-AEEAAAGVYAREGR-IVAVLSGERPNLRNFWSGRWSSTWTVQCAGDQATIAGEIKVHAHYFEDGNVQLQTTKAIASTTIPFSSEAEFTEQIVAHINASEGDLQSALEDMYANMNEETFRAMRRIMPVKRTKMEWNVNAVRM 280          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: F0YJQ7_AURAN (F-actin-capping protein subunit alpha (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJQ7_AURAN)

HSP 1 Score: 114 bits (284), Expect = 9.950e-28
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 1
Query:   19 QRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWN 480
            +R A+   +  Y G+ +    K  A   +   + L   +S    NLRN+WSG+W   +T+ +G+  A V G   VR HYFE+GN+QLQTSK     T+       L  AV AF++ +E+ L  GL++MY+ MS  T + MRR  PIT  +  WN
Sbjct:  119 ERDAVAAAVGAYVGARYGAECKCGAVYESDDASELAVVISGESVNLRNFWSGNWRSEWTVVLGDGEALVSGAVKVRAHYFEDGNVQLQTSKTCGEATVAAASPADLGAAVAAFVEAAETDLQNGLQEMYDNMSAETFKAMRRVMPITRTKMKWN 272          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A1V9YSW9_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSW9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.880e-27
Identity = 59/165 (35.76%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   22 RQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQ 516
            R ALQN L+ Y  S      +    V + G N +   +S  + NLRN+WSG W+ ++ + +   +A + G+  +  HY+E+GN+QLQ+ KD+  +T+ + D  SLA AV   I + E  +H  LEDMY  MS+ T + MRR  P+T  +  W++   R    L Q
Sbjct:  110 RLALQNALDDY--SLAQYTNQGVVAVVSTGENEIAIVISTERINLRNYWSGRWTSQWKLQLEGQAATLSGSIDLHVHYYEDGNVQLQSRKDVE-QTITYHDPSSLASAVAQAIIDEEHVIHSNLEDMYINMSEETFKEMRRVMPVTQTKMDWSIHAHRTAKDLGQ 271          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A2R5GVJ6_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVJ6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.130e-26
Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = 1
Query:   16 EQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRM 498
            E R+A+++EL  Y G  +     + + V +  G  LV  +S  K NL+N+WSG W  R+ +++ + S  + G   +  H FE+GN+QL TSK++S   L F +S SL  AV   I   ES + + LEDMY  MS    ++MRRA PIT  +  W+ A++++
Sbjct:  125 EMREAVEHELNEYIGEQYVKGTTTLSVVCSKDGYELVVLISGEKINLKNYWSGRWRSRFVVNINDCS--LSGFVKINCHTFEDGNVQLDTSKNVSDIKLSFDNSASLGVAVRKKIVSIESKVQDSLEDMYVNMSQEAFKDMRRALPITRQKMDWSGAQMQL 283          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A7S2FGD6_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGD6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.920e-26
Identity = 64/174 (36.78%), Postives = 100/174 (57.47%), Query Frame = 1
Query:    4 PILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNS----LVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDS-QSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTL 510
            P ++E R A+  E+  Y  S +  A+ ++  VFA   +         +SA K N+RN+WSG W   +T++V E    V G   VR HYFE+GN+QLQT+K+  P  L  + +   LA+AV  +I + E AL  GLE+MY  M++ T + MRR  PI  ++ +WN+ ++++   L
Sbjct:  124 PGMDELRVAINTEVSDYIKSQYQ-AQTASCTVFAQDNDGEHQVYSVVISAEKLNVRNFWSGQWISTWTVTVMEQGTTVEGRIKVRAHYFEDGNVQLQTAKNTEPIKLSAETAGDELAKAVRKYILDQEFALQSGLEEMYTNMTEETFKAMRRVMPIHRNKVSWNLNEVKLTTNL 296          
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A7S1XL78_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL78_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.960e-26
Identity = 63/168 (37.50%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   13 EEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQ 516
            E  R  LQ  +E Y  + F   +   A VF A     +      K NLRN+W+GSW+  +T+    A  ++ GT  V GHYFE+GN+QLQ SKD+   T+       L ++    I E+E  +  GLE+ Y+ MS+ TL+ +RR  PIT  + TWN+A  RM + L++
Sbjct:   53 ESTRATLQEGIELYMKTHFL--DMHGAAVFEADDKFHIVLAGV-KLNLRNYWAGSWTSTWTL----AGTQLMGTVKVHGHYFEDGNVQLQVSKDVPAITV--DGGSDLVKSTVTAISEAEQVVQRGLEESYQNMSETTLQAIRRVMPITRTKMTWNLAAHRMTSQLRK 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI5_ECTSI8.700e-8473.60F-actin-capping protein subunit alpha n=1 Tax=Ecto... [more]
A0A6H5KUK7_9PHAE2.960e-8273.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z114_9STRA3.930e-4048.26F-actin-capping protein subunit alpha n=1 Tax=Trib... [more]
A0A7S2WBT3_9STRA9.790e-3640.35F-actin-capping protein subunit alpha n=1 Tax=Rhiz... [more]
A0A812X353_SYMMI1.160e-3242.77F-actin-capping protein subunit alpha n=1 Tax=Symb... [more]
F0YJQ7_AURAN9.950e-2837.66F-actin-capping protein subunit alpha (Fragment) n... [more]
A0A1V9YSW9_9STRA3.880e-2735.76F-actin-capping protein subunit alpha n=1 Tax=Thra... [more]
A0A2R5GVJ6_9STRA1.130e-2637.27F-actin-capping protein subunit alpha n=1 Tax=Hond... [more]
A0A7S2FGD6_9STRA1.920e-2636.78F-actin-capping protein subunit alpha n=1 Tax=Dict... [more]
A0A7S1XL78_9STRA2.960e-2637.50F-actin-capping protein subunit alpha n=1 Tax=Phae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67142contigH-elongata_contig67142:896..3245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.0
Seed ortholog evalue8.1e-67
Seed eggNOG ortholog2880.D7FYI5
Preferred nameCAPZA2
KEGG rclassRC00027,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00167,ko:K03065,ko:K10364,ko:K14842
KEGG ReactionR07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,ko03050,ko04144,ko05169,map00280,map00640,map01100,map01110,map01130,map03050,map04144,map05169
KEGG ModuleM00036,M00341
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000912,GO:0000915,GO:0000916,GO:0001669,GO:0001709,GO:0001932,GO:0001933,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005884,GO:0005886,GO:0005903,GO:0005911,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006810,GO:0006888,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007293,GO:0007294,GO:0007444,GO:0007596,GO:0007599,GO:0008064,GO:0008092,GO:0008150,GO:0008290,GO:0009605,GO:0009611,GO:0009653,GO:0009888,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010563,GO:0010591,GO:0010594,GO:0010595,GO:0010605,GO:0010632,GO:0010634,GO:0010638,GO:0010639,GO:0010646,GO:0010648,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016324,GO:0019220,GO:0019221,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030054,GO:0030141,GO:0030154,GO:0030334,GO:0030335,GO:0030427,GO:0030479,GO:0030706,GO:0030716,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030837,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031323,GO:0031324,GO:0031333,GO:0031334,GO:0031344,GO:0031345,GO:0031399,GO:0031400,GO:0031410,GO:0031674,GO:0031982,GO:0032101,GO:0032103,GO:0032268,GO:0032269,GO:0032271,GO:0032272,GO:0032273,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032872,GO:0032873,GO:0032879,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0034097,GO:0034315,GO:0034329,GO:0034330,GO:0035220,GO:0035295,GO:0035722,GO:0036213,GO:0040011,GO:0040012,GO:0040017,GO:0042060,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043292,GO:0043332,GO:0043408,GO:0043409,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044449,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044837,GO:0044877,GO:0045087,GO:0045165,GO:0045177,GO:0045936,GO:0046328,GO:0046329,GO:0046907,GO:0046982,GO:0046983,GO:0048002,GO:0048193,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0050918,GO:0050920,GO:0050921,GO:0051015,GO:0051016,GO:0051125,GO:0051127,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051286,GO:0051301,GO:0051489,GO:0051490,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051693,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060491,GO:0061640,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0070302,GO:0070303,GO:0070671,GO:0070887,GO:0071203,GO:0071310,GO:0071345,GO:0071349,GO:0071526,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0097223,GO:0097435,GO:0097708,GO:0098590,GO:0098862,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:0110054,GO:0110055,GO:0120025,GO:0120032,GO:0120033,GO:0120035,GO:0120038,GO:1901879,GO:1901880,GO:1901881,GO:1902404,GO:1902407,GO:1902410,GO:1902531,GO:1902532,GO:1902743,GO:1902903,GO:1902904,GO:1902905,GO:1903047,GO:1903475,GO:2000145,GO:2000147,GO:2000601,GO:2000812,GO:2000813,GO:2001026,GO:2001028
EggNOG free text desc.barbed-end actin filament capping
EggNOG OGsKOG0836@1,KOG0836@2759
EC1.2.4.4
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-actin-capping protein subunit alpha
Ec32 orthologEc-23_003060.1
Exons5
Model size534
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67142.14323.1prot_H-elongata_contig67142.14323.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67142 896..3245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.484475-CDS-H-elongata_contig67142:895..9981622931062.484475-CDS-H-elongata_contig67142:895..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 896..998 -
1691679682.369976-CDS-H-elongata_contig67142:895..9981691679682.369976-CDS-H-elongata_contig67142:895..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 896..998 -
1622931062.503066-CDS-H-elongata_contig67142:1450..15601622931062.503066-CDS-H-elongata_contig67142:1450..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 1451..1560 -
1691679682.381528-CDS-H-elongata_contig67142:1450..15601691679682.381528-CDS-H-elongata_contig67142:1450..1560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 1451..1560 -
1622931062.5193748-CDS-H-elongata_contig67142:1847..19801622931062.5193748-CDS-H-elongata_contig67142:1847..1980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 1848..1980 -
1691679682.389677-CDS-H-elongata_contig67142:1847..19801691679682.389677-CDS-H-elongata_contig67142:1847..1980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 1848..1980 -
1622931062.5365744-CDS-H-elongata_contig67142:2554..26591622931062.5365744-CDS-H-elongata_contig67142:2554..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 2555..2659 -
1691679682.3973978-CDS-H-elongata_contig67142:2554..26591691679682.3973978-CDS-H-elongata_contig67142:2554..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 2555..2659 -
1622931062.55466-CDS-H-elongata_contig67142:3162..32451622931062.55466-CDS-H-elongata_contig67142:3162..3245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 3163..3245 -
1691679682.4080262-CDS-H-elongata_contig67142:3162..32451691679682.4080262-CDS-H-elongata_contig67142:3162..3245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67142 3163..3245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67142.14323.1

>prot_H-elongata_contig67142.14323.1 ID=prot_H-elongata_contig67142.14323.1|Name=mRNA_H-elongata_contig67142.14323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKH
NLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDIS
PKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAK
PITADRFTWNVAKIRMRNTLKQNASGK*
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mRNA from alignment at H-elongata_contig67142:896..3245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67142.14323.1 ID=mRNA_H-elongata_contig67142.14323.1|Name=mRNA_H-elongata_contig67142.14323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2350bp|location=Sequence derived from alignment at H-elongata_contig67142:896..3245- (Himanthalia elongata Himel1 dioecious)
GACCCTATTTTGGAAGAGCAGCGACAGGCGTTGCAAAACGAGCTGGAGAC GTATCGAGGTAGCTTTTTCTCCGGGGCCGAAAAGTGAGCGCGGCTGGCAC GTCCAGCAAAAGTCGACGTGCAAACCAGCACATCAGCACCATGATGGATG AGAGATCCTATTTTGCGTCAGAGAGAGAAGTTTGGAGGTTTCGGGGTCGT GGGAAAGGGGCAGAACGTCCTCAATTTTTGATCCCATAGCTGTTAGATAA AATCCGAGACGGATTTTATGTGCATCGAAGTTGTGGGTTGTTATGATCAT GTCGTTTCGAGGCACATCCACTCCGATCTGGAGATGGACGTCTCCTCGCA GTACTTATCTTTTTTCTAGTTTTCGTCCCTGCACCGCAGCCGCGACGAGC TCGTCCGTGGTACCTTTGTTACTCGTACCACTCTTCGTCGACATGCACAC AGCAGTACAACAGTGTGTAAGGTAACCGTACCATCCCGATCGACGCATCG TAGCAAAATCCCTCGGATGGATCTTCCCCTCTTTTTTTCATTTTTTTTTT CTTCTTTCGTGCCTCGTGTCCTGGGGCGCCTTACAGATCTGCCGCTTGCG TCTTCGCGGCGGGCGGCAACAGCCTCGTGGCGTACGTGTCTGCCCACAAG CACAACCTCAGGAACTGGTGGAGCGGCAGCTGGAGTGGACGGTAGGGTGC AGTTTGTTCCACGCGCCGGGTCGATTCGATTCGATTCAAGGTCGTTGGCG TGGAGTATGTGTATGTCGGTAATGCCATACTTATGTGTGGTGTGTCCCAA GCCTCAAGTACTGGTCAGGAGTCGTGTTTGAAAGAAAGGTTATCGCGTGA CAACTTGCGTCTATCGACAACGACGTTCTCGTCCAAGCGGTATTGATCAC CGCCAGTTTATTTCCCTGTGAGCAAGGGTGGGGTGGGGGTAGAAGGCCTG TACTTTTATCTTTCCGGTTTAATGTGCCCGTATGACGCTTTGTAGCTAGG AAAACAACTCCACCGCGCCCCACGGTCCGGGCTGGGCCTGGCCGGACCGG CCTTTTCTTTTCCAAGGAAATCCGCTGGATATTTTCTTCTACTTCTTTTC CCCTTTTGTCTATTATTGCCGAACTTTTGTGTTTTATTTCACCCGGAAAA CAGCCACAATTTAGCGCGCATCGTCTCCAACAACACGCCCCAACCTCGCC TTGCTACGCCCCGTTCCAACCCCACCACGTACAACGCTCGGTCTCGGATT GCACCAAAACGCCAGCTACACCATCAGCGTGGGCGAGGCTTCGGCTGAGG TGTGCGGAACCACTTCCGTGCGCGGCCACTACTTCGAGAACGGCAATATC CAGCTTCAGACGTCGAAGGATATCTCCCCGAAGACCCTGCGCTTTAAGGT ACGAGAAACAAAAGGGCACAGAAGGGAACGAACATATGGGGGGCGAGTCA AATGCGCTTCCCTCTTAATCGTTTTTTTCCCTCTCTCCCCTTCTCTTCTA AAGTCTACACGCCACGGAAAGGTGGTTCGTATCCCCCGCGCAGATAGTTT GATGCTCCCCGTCGTGCAGGGGAGAGGGGAGCGCCATAATGAAGAGTAGG ATGTCCAGTCCACAGATCGTTCAGCGCGTGCGTGTATTACAGTAAAAATG CGTTTGGGCTTTGTCGCCCTCCCCCCTCCTGTCAGGATTCTCAATCGCTT GCGGAAGCGGTGACGGCGTTCATCCAGGAATCGGAGAGCGCGCTACACGA GGGACTGGAAGACATGTACGAGAAGATGAGCGACGTCACCCTCAGGTGCG CACTGGGGTTTCATTCGCGAGAGCATTTTGATCAAGGGGCAGGGAGAAAG TCGTTTTGCTGTTGTTGCGGAAACCAAATATGGAAAATCTCGAACCAAAA CCAAACCCGCGCTTCTCTCCTTAATGGTTGATTGATTGATTGAATTATCA CATAAGCTGATGTCAAAATCCAGCCCGTGGTCACGGTAGAAAAAACGCAC CATCCATCACCTTCTAAAACTGAAGTCTTGGTTTGTGCGTTCTAAACTCA TGCGCCATTTCCTTTGTTCCTCGGCTGTGAACTCTTTCTTCCATCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCC CCCCCCCCCCCACCCCCCCNNNNNNNNNNCTTTTTTCCCCGCGGTTGCCT CTTTCTTCCCCCCCCCCCCCCCCCCCCCGCCTACCCTTCTCTCCAAGGAA CATGAGGCGCGCGAAGCCTATCACAGCCGATCGGTTCACGTGGAACGTCG CCAAGATTCGCATGCGCAACACGCTCAAGCAGAACGCATCGGGCAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig67142:896..3245-

>mRNA_H-elongata_contig67142.14323.1 ID=mRNA_H-elongata_contig67142.14323.1|Name=mRNA_H-elongata_contig67142.14323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig67142:896..3245- (Himanthalia elongata Himel1 dioecious)
GACCCTATTTTGGAAGAGCAGCGACAGGCGTTGCAAAACGAGCTGGAGAC
GTATCGAGGTAGCTTTTTCTCCGGGGCCGAAAAGACCCTATTTTGGAAGA
GCAGCGACAGGCGTTGCAAAACGAGCTGGAGACGTATCGAGGTAGCTTTT
TCTCCGGGGCCGAAAAATCTGCCGCTTGCGTCTTCGCGGCGGGCGGCAAC
AGCCTCGTGGCGTACGTGTCTGCCCACAAGCACAACCTCAGGAACTGGTG
GAGCGGCAGCTGGAGTGGACGATCTGCCGCTTGCGTCTTCGCGGCGGGCG
GCAACAGCCTCGTGGCGTACGTGTCTGCCCACAAGCACAACCTCAGGAAC
TGGTGGAGCGGCAGCTGGAGTGGACGCTACACCATCAGCGTGGGCGAGGC
TTCGGCTGAGGTGTGCGGAACCACTTCCGTGCGCGGCCACTACTTCGAGA
ACGGCAATATCCAGCTTCAGACGTCGAAGGATATCTCCCCGAAGACCCTG
CGCTTTAAGCTACACCATCAGCGTGGGCGAGGCTTCGGCTGAGGTGTGCG
GAACCACTTCCGTGCGCGGCCACTACTTCGAGAACGGCAATATCCAGCTT
CAGACGTCGAAGGATATCTCCCCGAAGACCCTGCGCTTTAAGGATTCTCA
ATCGCTTGCGGAAGCGGTGACGGCGTTCATCCAGGAATCGGAGAGCGCGC
TACACGAGGGACTGGAAGACATGTACGAGAAGATGAGCGACGTCACCCTC
AGGATTCTCAATCGCTTGCGGAAGCGGTGACGGCGTTCATCCAGGAATCG
GAGAGCGCGCTACACGAGGGACTGGAAGACATGTACGAGAAGATGAGCGA
CGTCACCCTCAGGAACATGAGGCGCGCGAAGCCTATCACAGCCGATCGGT
TCACGTGGAACGTCGCCAAGATTCGCATGCGCAACACGCTCAAGCAGAAC
GCATCGGGCAAATGAGAACATGAGGCGCGCGAAGCCTATCACAGCCGATC
GGTTCACGTGGAACGTCGCCAAGATTCGCATGCGCAACACGCTCAAGCAG
AACGCATCGGGCAAATGA
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