mRNA_H-elongata_contig67110.14321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67110.14321.1
Unique NamemRNA_H-elongata_contig67110.14321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67110.14321.1 vs. uniprot
Match: D8LL69_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL69_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.760e-9
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  601 TSKRSGEVWRVTPCRVTGCTKRPSFGQAGDAKASYCGAHKLKDM 732
            +S  +G+VWRV PC+V GC KRPSFG  G+ KASYCG HKL  M
Sbjct:  236 SSAWAGDVWRVMPCKVDGCKKRPSFGGVGELKASYCGTHKLAGM 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67110.14321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL69_ECTSI8.760e-963.64EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67110contigH-elongata_contig67110:395..2260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-24_002730.1
Hectar predicted targeting categoryother localisation
Exons4
Model size1074
Cds size1074
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67110.14321.1prot_H-elongata_contig67110.14321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67110 395..2260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.047563-CDS-H-elongata_contig67110:394..5891622931062.047563-CDS-H-elongata_contig67110:394..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 395..589 -
1691679682.1405685-CDS-H-elongata_contig67110:394..5891691679682.1405685-CDS-H-elongata_contig67110:394..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 395..589 -
1622931062.0677245-CDS-H-elongata_contig67110:794..9531622931062.0677245-CDS-H-elongata_contig67110:794..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 795..953 -
1691679682.151962-CDS-H-elongata_contig67110:794..9531691679682.151962-CDS-H-elongata_contig67110:794..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 795..953 -
1622931062.086803-CDS-H-elongata_contig67110:1099..17241622931062.086803-CDS-H-elongata_contig67110:1099..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 1100..1724 -
1691679682.161683-CDS-H-elongata_contig67110:1099..17241691679682.161683-CDS-H-elongata_contig67110:1099..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 1100..1724 -
1622931062.1056077-CDS-H-elongata_contig67110:2165..22601622931062.1056077-CDS-H-elongata_contig67110:2165..2260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 2166..2260 -
1691679682.1739852-CDS-H-elongata_contig67110:2165..22601691679682.1739852-CDS-H-elongata_contig67110:2165..2260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67110 2166..2260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67110.14321.1

>prot_H-elongata_contig67110.14321.1 ID=prot_H-elongata_contig67110.14321.1|Name=mRNA_H-elongata_contig67110.14321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=358bp
QSLLVKELHSLRKKEEQIRDLQLLLLKSMGPSLRATTLLGPPTGAIHSHP
GARQHQTFPGGNSSAVPNTIGSVGAGRDANANHDANGNGNVSVDGVRGSR
TKRRRESAATTAATATPRRGAAMSKGRREDSTMEGERQSPTSPAVMGQRV
PPREGHESGGESAGQDALESHDEAETAGVSSGRDGAEPMHLDLVIGAHGR
TSKRSGEVWRVTPCRVTGCTKRPSFGQAGDAKASYCGAHKLKDMMLVNRR
RRCSKEGCSKQPLYGTDSDRVPLACGTHKAPGYVNVTHRRCAQLGCTTQP
VYGEPPSADGGFCPHFCAGHKKPGMVSQKRTRCATNRCSRRAAYGMPGGE
IQLCAEHK
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mRNA from alignment at H-elongata_contig67110:395..2260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67110.14321.1 ID=mRNA_H-elongata_contig67110.14321.1|Name=mRNA_H-elongata_contig67110.14321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1866bp|location=Sequence derived from alignment at H-elongata_contig67110:395..2260- (Himanthalia elongata Himel1 dioecious)
CAGTCTTTGCTCGTGAAGGAGCTGCACTCCTTGCGAAAGAAGGAAGAGCA
AATACGGGACCTGCAGCTCCTGCTGCTGAAGAGCATGGGACCAAGGTTGG
CGTGAGTGTTCGCTCGAAAAGAGAACCGACCGCAGGGAAGGAGGCGTTAT
TTTGTGTCCCAAGTTGTGGAACGAACAAAGCTACCCTTGTTCGCCTTCAC
ACTCGGTGCGATCCCGATTGGCCAAGACGTTTTCCTTTTCAAAGTATAAG
CAGAAGAGCGAATTATTTTTTTGACGTAACTGCAGACGTTTTTGTTTTTT
CTTCTTCTATCTTTTCTTTCTTTTCTTCCTTTCTTTCTTTAGTGACGCCT
CGTGACCCCGTTCCCGGTGTTGTCTTCCGAATGCCTCGGTTTCTTGTGTG
GTCACCATCGTCCGTTCTACCCTATTGCCGACAGTTTAGCGGGAGCGATA
TCTGGATCGCCCCATCACCTGGTTGGAGGTGGAGTGGGTGGTGCAATCCT
TGCGGGCGCCGCGATGCCACATGCGACGGCTGGGAGTCTCCGTGCGACAA
CTCTTCTCGGCCCGCCGACGGGCGCGATTCATTCTCATCCCGGCGCCCGC
CAGCATCAAACCTTCCCCGGCGGCAACAGTTCCGCTGTTCCGAACACCAT
TGGTTCCGTTGGTGCAGGCAGGGACGCCAACGCGAATCACGATGCTAACG
GTAACGGTAACGTTAGTGTAGACGGAGTTCGCGGCAGCAGGACCAAGAGA
AGGAGAGAATCGGCGGCAACGACGGCTGCAACGGCGACACCACGCAGAGG
CGCAGCAATGAGCAAAGGGAGAAGGGAAGATAGTACGATGGAGGGAGAAC
GGCAGTCCCCCACATCTCCGGCAGTGATGGGTCAGAGAGTACCGCCACGA
GAAGGACACGAAAGCGGCGGAGAGTCAGCGGGTCAAGACGCGCTAGAATC
CCACGATGAGGCAGAGACGGCGGGCGTTTCAAGCGGTCGTGATGGAGCGG
AGCCAATGCATTTGGACCTTGTTATCGGCGCCCACGGCAGGACATCTAAA
CGATCGGGGGAAGTGTGGCGCGTGACGCCGTGCAGGGTGACGGGGTGCAC
GAAGAGACCGAGCTTTGGACAGGCGGGAGATGCTAAGGCCTCCTACTGCG
GGGCTCACAAGGTCTGCGTCCTACCTATTGTGTTATGAAGAAAACGAAGA
TTCATACCGAGGTGTTAATTCTAAAGTTAGCGTTTCCTGACTGGAGGCCA
GCCACATCGTGTGACCCCCCCCCCACCCTCAACCCGTCTGACCCTTGTAT
TATCCAGCTAAAAGATATGATGTTGGTCAACCGGCGACGGCGTTGTTCGA
AGGAAGGATGCTCTAAGCAGCCCCTTTACGGGACCGACTCGGATCGAGTG
CCTCTCGCGTGCGGGACTCACAAAGCGCCAGGATATGTCAACGTCACTCA
CCGTCGCTGTGCCCAGGTTTGTGCAGAGTCAGCGTGGTCAAAAATAGAGA
CCTTTACGAGTTTTCCGTAGATCGCGCTACACCCAAGAGACCCCTCGGCG
TGCCCATACACCACGGGGTGTTGACGTCACGCTGCCGGTGCGCGATCAGA
TAACACATGCCCTTTCTACAATCATGGCGCGCGCTCGCGTGTTCCTCGTC
TCGTGACCTTTGTTCGCTCAGCTCGGATGCACCACCCAGCCTGTGTACGG
TGAACCTCCTTCGGCAGACGGTGGTTTTTGCCCCCATTTTTGCGCCGGGC
ACAAGAAGCCAGGCATGGTTAGCCAAAAGCGGACTCGCTGTGCCACAAAT
CGGTGCTCCAGGCGGGCTGCGTACGGGATGCCGGGAGGAGAGATCCAATT
GTGTGCTGAGCACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig67110:395..2260-

>mRNA_H-elongata_contig67110.14321.1 ID=mRNA_H-elongata_contig67110.14321.1|Name=mRNA_H-elongata_contig67110.14321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2148bp|location=Sequence derived from alignment at H-elongata_contig67110:395..2260- (Himanthalia elongata Himel1 dioecious)
CAGTCTTTGCTCGTGAAGGAGCTGCACTCCTTGCGAAAGAAGGAAGAGCA
AATACGGGACCTGCAGCTCCTGCTGCTGAAGAGCATGGGACCAAGCAGTC
TTTGCTCGTGAAGGAGCTGCACTCCTTGCGAAAGAAGGAAGAGCAAATAC
GGGACCTGCAGCTCCTGCTGCTGAAGAGCATGGGACCAAGTCTCCGTGCG
ACAACTCTTCTCGGCCCGCCGACGGGCGCGATTCATTCTCATCCCGGCGC
CCGCCAGCATCAAACCTTCCCCGGCGGCAACAGTTCCGCTGTTCCGAACA
CCATTGGTTCCGTTGGTGCAGGCAGGGACGCCAACGCGAATCACGATGCT
AACGGTAACGGTAACGTTAGTGTAGACGGAGTTCGCGGCAGCAGGACCAA
GAGAAGGAGAGAATCGGCGGCAACGACGGCTGCAACGGCGACACCACGCA
GAGGCGCAGCAATGAGCAAAGGGAGAAGGGAAGATAGTACGATGGAGGGA
GAACGGCAGTCCCCCACATCTCCGGCAGTGATGGGTCAGAGAGTACCGCC
ACGAGAAGGACACGAAAGCGGCGGAGAGTCAGCGGGTCAAGACGCGCTAG
AATCCCACGATGAGGCAGAGACGGCGGGCGTTTCAAGCGGTCGTGATGGA
GCGGAGCCAATGCATTTGGACCTTGTTATCGGCGCCCACGGCAGGACATC
TAAACGATCGGGGGAAGTGTGGCGCGTGACGCCGTGCAGGGTGACGGGGT
GCACGAAGAGACCGAGCTTTGGACAGGCGGGAGATGCTAAGGCCTCCTAC
TGCGGGGCTCACAAGTCTCCGTGCGACAACTCTTCTCGGCCCGCCGACGG
GCGCGATTCATTCTCATCCCGGCGCCCGCCAGCATCAAACCTTCCCCGGC
GGCAACAGTTCCGCTGTTCCGAACACCATTGGTTCCGTTGGTGCAGGCAG
GGACGCCAACGCGAATCACGATGCTAACGGTAACGGTAACGTTAGTGTAG
ACGGAGTTCGCGGCAGCAGGACCAAGAGAAGGAGAGAATCGGCGGCAACG
ACGGCTGCAACGGCGACACCACGCAGAGGCGCAGCAATGAGCAAAGGGAG
AAGGGAAGATAGTACGATGGAGGGAGAACGGCAGTCCCCCACATCTCCGG
CAGTGATGGGTCAGAGAGTACCGCCACGAGAAGGACACGAAAGCGGCGGA
GAGTCAGCGGGTCAAGACGCGCTAGAATCCCACGATGAGGCAGAGACGGC
GGGCGTTTCAAGCGGTCGTGATGGAGCGGAGCCAATGCATTTGGACCTTG
TTATCGGCGCCCACGGCAGGACATCTAAACGATCGGGGGAAGTGTGGCGC
GTGACGCCGTGCAGGGTGACGGGGTGCACGAAGAGACCGAGCTTTGGACA
GGCGGGAGATGCTAAGGCCTCCTACTGCGGGGCTCACAAGCTAAAAGATA
TGATGTTGGTCAACCGGCGACGGCGTTGTTCGAAGGAAGGATGCTCTAAG
CAGCCCCTTTACGGGACCGACTCGGATCGAGTGCCTCTCGCGTGCGGGAC
TCACAAAGCGCCAGGATATGTCAACGTCACTCACCGTCGCTGTGCCCAGC
TAAAAGATATGATGTTGGTCAACCGGCGACGGCGTTGTTCGAAGGAAGGA
TGCTCTAAGCAGCCCCTTTACGGGACCGACTCGGATCGAGTGCCTCTCGC
GTGCGGGACTCACAAAGCGCCAGGATATGTCAACGTCACTCACCGTCGCT
GTGCCCAGCTCGGATGCACCACCCAGCCTGTGTACGGTGAACCTCCTTCG
GCAGACGGTGGTTTTTGCCCCCATTTTTGCGCCGGGCACAAGAAGCCAGG
CATGGTTAGCCAAAAGCGGACTCGCTGTGCCACAAATCGGTGCTCCAGGC
GGGCTGCGTACGGGATGCCGGGAGGAGAGATCCAATTGTGTGCTGAGCAC
AAGCTCGGATGCACCACCCAGCCTGTGTACGGTGAACCTCCTTCGGCAGA
CGGTGGTTTTTGCCCCCATTTTTGCGCCGGGCACAAGAAGCCAGGCATGG
TTAGCCAAAAGCGGACTCGCTGTGCCACAAATCGGTGCTCCAGGCGGGCT
GCGTACGGGATGCCGGGAGGAGAGATCCAATTGTGTGCTGAGCACAAG
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