mRNA_H-elongata_contig67097.14319.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67097.14319.1
Unique NamemRNA_H-elongata_contig67097.14319.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 4.510e-110
Identity = 199/420 (47.38%), Postives = 257/420 (61.19%), Query Frame = 1
Query:    1 QIRTVCKD-PKIQRLAEAKIRNRAEACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAV----------TDKGSEELSTVTDEALEKNGEA-------GEAD---------------------------RSRAKEQD----KRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTSGVAECPSAEAALDLIRSAASG---------------STMDKAGENAVDPKKLRLSDMKVVQLNPSLLEGDEDNGPE 1068
            +IRTVCKD P+     EAK+R   +A Q+ +LR+AVGFRRV+DEIS++GKPVI HNGL+D+ HTHDKFVGPIP D ++GTRA+H+ LP LFDSKVVM+KA+A GM LP T LGEA  WLR+K+ A            + G E      +E  + +G A       GEA+                            + A E+D    +R+ + W A  APGFEERY    REHEAG+DAYLTGCCFAAAA +GLGVG++E+K ++SG E P AL    N LPLY+V+ GQ++ LPGP P  D S Y+HVSGFP AA+TD ++  +KAV GC  +WFHW+DDTSGV +C SAE A  L+R+AA+                +  D       DP +L L D+K+VQ+  +LL G     PE
Sbjct:  266 EIRTVCKDDPEKHAEEEAKLRADEQARQLGDLRRAVGFRRVVDEISKAGKPVICHNGLLDLLHTHDKFVGPIPVDMDDGTRALHSLLPRLFDSKVVMAKAMAAGMKLPRTVLGEAHQWLREKYPAPXXXXXXLEEGAEAGMEPAEGAAEEGQQVDGTAVVATTSGGEANGDSKTNGEGXXXXXXXXXAVPPVEAGAEAAASERDVEALERARRGWDAVLAPGFEERYKDGGREHEAGFDAYLTGCCFAAAATVGLGVGLDELKRMASGEETPAALGSAQNVLPLYKVVGGQQVCLPGPAPKVDLSRYVHVSGFPSAARTDAVLASIKAVDGCVDSWFHWMDDTSGVVDCTSAEGAEALLRAAAAXXXXXXXXXXXXXGTPAAGDGGSGEEADPCRLSLGDLKLVQMEHALLNGGGRGAPE 685          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A087Y4R9_POEFO (Poly(A)-specific ribonuclease PARN n=14 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A087Y4R9_POEFO)

HSP 1 Score: 91.3 bits (225), Expect = 2.330e-16
Identity = 83/269 (30.86%), Postives = 120/269 (44.61%), Query Frame = 1
Query:   79 QMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
            + EEL  AVGF RVI+ IS+SGK V+ HN L+D+ HT  +F  P+P D ++         P L D+K++ S                            T    E ++  +   LEK          + KE   +  Q   A   P ++   TAQ + HEAGYDAY+TG CF + A       +  I  IS   ++ E   P  N L L R++    +++ GP   P     L+V+ FP   KT D+ +   A    + +W   IDDTS
Sbjct:  260 EQEELNNAVGFSRVINAISKSGKLVVGHNMLLDVMHTIHQFYCPLPEDLQDFKEVAMCVFPRLLDTKLMAS----------------------------TQPFKELINNTSLAELEK----------QVKETPFKPPQVETAEGFPSYD---TAQEQLHEAGYDAYITGLCFISMANHLGSFLMPPISYISPRSKLVE---PFFNKLFLMRIIDIPYLNITGPDLQPKRDHVLYVT-FPKEWKTSDLYQLFSAFGNIQVSW---IDDTS 480          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: S4RGQ4_PETMA (Poly(A)-specific ribonuclease PARN n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RGQ4_PETMA)

HSP 1 Score: 90.1 bits (222), Expect = 4.450e-16
Identity = 84/274 (30.66%), Postives = 119/274 (43.43%), Query Frame = 1
Query:   82 MEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQ---KFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIP---EALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
            +EEL  AVGF RVI  IS+SGK ++ HN L+D+ HT  +F  P+P   +E     +   P L D+K++ S    + + +  TTL +    L +   K  AV                                             A GF    TA  + HEAGYDAY+TG CFA+ A   LG  ++  K       IP     + P  N L L R++    ++L GP   P+    LHV+ FP   +T D+ +   A    + +W   IDDTS
Sbjct:  259 LEELEDAVGFTRVIQAISKSGKLLVGHNMLLDVMHTVHQFYSPLPESLDEFKELTNCVFPRLLDTKLMSSTHPFKEV-IQFTTLADLHRRLSEAPFKMPAVAS-------------------------------------------AEGFPAYSTAVEQLHEAGYDAYITGLCFASMANY-LGSFMDPPK-----SHIPARSHLIEPFVNKLFLMRIIDIPYLNLTGPDLKPNRDHVLHVT-FPKEWRTSDLHQLFSAFGNIQVSW---IDDTS 478          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: Q28DE5_XENTR (Novel protein similar to poly(A)-specific ribonuclease (Deadenylation nuclease) (Fragment) n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=Q28DE5_XENTR)

HSP 1 Score: 89.4 bits (220), Expect = 5.400e-16
Identity = 87/273 (31.87%), Postives = 121/273 (44.32%), Query Frame = 1
Query:   70 EACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKG-ISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
            +A + EEL  AVGF R+I  IS SGK V+ HN L+DI HT  +F   +P +  E     +   P + D+K++ S                            T+   E +   +   LEK          R KE   +  +      A GF    TA  + HEAGYDAY+TG CF + A   LG  +   KG +SS  +I   + P  N L L R++    ++L GP   P     LHV+ FP   KT D+ +   A    + +W   IDDTS
Sbjct:   48 QAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMAS----------------------------TNPFKEIIYNTSLAELEK----------RLKEAPFKPPKV---DSAEGFPSYNTASEQLHEAGYDAYITGLCFISMANY-LGSFLSPPKGYVSSRSKI---IRPFFNKLFLMRIMDIPYLNLEGPDLQPKRDNVLHVA-FPKEWKTSDLYQLFSAFGNIQVSW---IDDTS 271          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A199VE10_ANACO (Poly(A)-specific ribonuclease PARN n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A199VE10_ANACO)

HSP 1 Score: 87.0 bits (214), Expect = 6.070e-15
Identity = 86/294 (29.25%), Postives = 130/294 (44.22%), Query Frame = 1
Query:   91 LRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVM--SKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALE-KNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIPEALAPVSNTL-------PLYRVLAGQRMSLPGPT---PPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCES-TWFHWIDDTSGVAECPSAEAALDLI 930
            +R AVGFR VID ++   K ++ HN L+DI H ++KF+GP+P+   E   A+H   P + D+K ++  S+ I   M     +L  AF+ L           S+   T +   +E ++ EAG +                   F+ G          +HEAGYDA++TGC FA      LGV  E +   ++  +I + LAP  N L        +  +  G     PG     PP  FS    V GFP   K  D+   +  V G +S T   +ID T+ + +    E   D +
Sbjct:  332 VRSAVGFRHVIDLLASEQKLIVGHNCLLDIAHIYNKFIGPLPSSMAEFVLAVHDIFPYVVDTKHLLNSSQGIQYFMKKKSKSLSSAFSLL----CPAVSSPSKNFGTSSHVKVEVESDEAGSS------------------CFSSG---------AKHEAGYDAFMTGCVFAQICCH-LGVNFELLSPSANLTKI-DRLAPYINLLYPAWNSGTVINLSTGTEKPEPGYKRNYPPVVFSKVTLVWGFPSKLKPKDLKESICKVFGPDSVTSIFFIDSTAALIQLSKEEFVNDFL 592          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: PARN_XENLA (Poly(A)-specific ribonuclease PARN n=12 Tax=Xenopus TaxID=8353 RepID=PARN_XENLA)

HSP 1 Score: 85.1 bits (209), Expect = 2.420e-14
Identity = 84/273 (30.77%), Postives = 120/273 (43.96%), Query Frame = 1
Query:   70 EACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKG-ISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
            +A + EEL  AVGF R+I  IS SGK V+ HN L+D+ HT  +F   +P +  E     +   P + D+K++ S                            T+   E +   +   LEK          R KE   +  +      A GF+   TA  + HEAGYDAY+TG CF + A   LG  +   K  +S   +I   + P  N L L R++    ++L GP   P     LHV+ FP   KT D+ +   A    + +W   IDDTS
Sbjct:  256 QAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMAS----------------------------TNPFKEIIYNTSLAELEK----------RLKEAPFKPPKV---DSAEGFQSYNTASEQLHEAGYDAYITGLCFISMANY-LGSFLSPPKDYVSCRSKI---VRPFFNKLFLMRIMDIPYLNLEGPDLQPKRDNVLHVT-FPKEWKTSDLYQLFSAFGNIQVSW---IDDTS 479          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A803QCH9_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QCH9_CANSA)

HSP 1 Score: 83.6 bits (205), Expect = 8.290e-14
Identity = 55/170 (32.35%), Postives = 82/170 (48.24%), Query Frame = 1
Query:  100 AVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSK--AIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAA 603
            A+GFR VID +S   K ++ HN  +DI H H+KFVGP+P + E+   ++H + P + D+K++++    + + M    T+L  AFT +    A          S V  EA        + D SR          +W A               +HEAGYDA++TGC FA A
Sbjct:  316 AIGFRHVIDLLSSEKKLIVGHNCFLDIAHVHNKFVGPLPLEAEDFVASIHKYFPHIIDTKILLNTHPILQQRMKKSKTSLSSAFTMICPHIALSVSSAVASDSYVKVEA--------QVDDSRCS--------SWNAG-------------GKHEAGYDAFMTGCIFAQA 456          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A2G5C437_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5C437_AQUCA)

HSP 1 Score: 83.6 bits (205), Expect = 8.390e-14
Identity = 62/195 (31.79%), Postives = 93/195 (47.69%), Query Frame = 1
Query:   40 LAEAKIRNRAEACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMS--KAIAEGMSLPCTTLGEAFTWLRQKFAA-----VTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAA 603
            L EA+   R EA +M+ ++ AVGFR VID +    K V+ HN  +DI H H+KF+GP+P+  EE   ++H   P + D+K ++   K +   M    T+L +AF +L  +F++     V ++ S E     DE    N  +G                                   +HEAGYDA++TGC FA A
Sbjct:  312 LKEARDTKRREA-EMK-VKNAVGFRHVIDLLLSEQKLVVGHNCFLDIAHIHNKFLGPLPSKIEEFASSIHKHFPHIIDTKYLLKTDKVMQFMMKKKSTSLSKAFAYLCPQFSSLSGSSVVNRQSVEFEVQVDELRSSNWNSG----------------------------------AKHEAGYDAFMTGCVFAQA 470          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A822IC25_9NEOB (Poly(A)-specific ribonuclease PARN (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822IC25_9NEOB)

HSP 1 Score: 82.4 bits (202), Expect = 1.410e-13
Identity = 81/273 (29.67%), Postives = 121/273 (44.32%), Query Frame = 1
Query:   70 EACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAA-MLGLGVGVEEIKGISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
            +A + E+L  AVGF RVI  IS SGK V+ HN ++D+ HT ++F   +P D EE  R  +  LP + D+K++ S                      Q F A+       +S      LEK          R +    +  +   A   P ++   T+  + HEAGYDAY+TG CF + A  LG  +   +           + ++P  N L L R+     ++L GP   P     LHV+ FP   K+ D+ +   A    + +W   IDDTS
Sbjct:  234 KAKEQEDLNDAVGFSRVIQAISSSGKLVVGHNMMLDVMHTINQFYCQLPVDLEEFKRLTNCVLPRVLDTKLMAST---------------------QPFKAI-------ISHTVLAELEK----------RLQMAPFKPPKVESAEDFPSYD---TSVGQLHEAGYDAYITGLCFISMADYLGSFLNPPQTHVTVQS----DVISPFFNKLFLMRITDIPYLNLDGPDLLPKRDNVLHVT-FPKEWKSSDLYQLFNAFGKIQVSW---IDDTS 457          
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A4Y7ITR0_PAPSO (Uncharacterized protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7ITR0_PAPSO)

HSP 1 Score: 79.0 bits (193), Expect = 1.720e-13
Identity = 58/180 (32.22%), Postives = 87/180 (48.33%), Query Frame = 1
Query:   91 LRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSK--AIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFA-AAAMLGLG 621
            L+ A GFRRVID +S   K ++ HN  +D+ H + KF+GP+P   +E   ++H   P + D+K++++   AI   M    T+L  AF  L  + A      SE  ++V    L          +   +  D RS   W +                HEAGYDA++TGC FA A + LG+G
Sbjct:   16 LKAATGFRRVIDLLSSEQKLLVGHNSFLDMTHIYSKFIGPLPPTIDEYISSVHKVFPYIIDTKLLLNTDCAIQRLMKKQSTSLSSAFALLCPQIAL----SSEGSASVNQPGL----------KIEVQVDDMRSFN-WNSG-------------ANHEAGYDAFMTGCIFAQACSHLGIG 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNN0_ECTSI4.510e-11047.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A087Y4R9_POEFO2.330e-1630.86Poly(A)-specific ribonuclease PARN n=14 Tax=Cyprin... [more]
S4RGQ4_PETMA4.450e-1630.66Poly(A)-specific ribonuclease PARN n=2 Tax=Petromy... [more]
Q28DE5_XENTR5.400e-1631.87Novel protein similar to poly(A)-specific ribonucl... [more]
A0A199VE10_ANACO6.070e-1529.25Poly(A)-specific ribonuclease PARN n=4 Tax=Ananas ... [more]
PARN_XENLA2.420e-1430.77Poly(A)-specific ribonuclease PARN n=12 Tax=Xenopu... [more]
A0A803QCH9_CANSA8.290e-1432.35Uncharacterized protein n=4 Tax=Cannabis sativa Ta... [more]
A0A2G5C437_AQUCA8.390e-1431.79Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
A0A822IC25_9NEOB1.410e-1329.67Poly(A)-specific ribonuclease PARN (Fragment) n=1 ... [more]
A0A4Y7ITR0_PAPSO1.720e-1332.22Uncharacterized protein n=1 Tax=Papaver somniferum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67097contigH-elongata_contig67097:584..2662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.1
Seed ortholog evalue3.8e-95
Seed eggNOG ortholog2880.D7FNN0
KEGG koko:K01148,ko:K13202
KEGG Pathwayko03018,map03018
EggNOG free text desc.poly(A)-specific ribonuclease activity
EggNOG OGsKOG1990@1,KOG1990@2759
EC3.1.13.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease CAF1
Ec32 orthologEc-01_004890.1
Exons3
Model size1095
Cds size1095
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67097.14319.1prot_H-elongata_contig67097.14319.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67097 584..2662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.718474-CDS-H-elongata_contig67097:583..7571622931061.718474-CDS-H-elongata_contig67097:583..757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67097 584..757 +
1691679682.017576-CDS-H-elongata_contig67097:583..7571691679682.017576-CDS-H-elongata_contig67097:583..757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67097 584..757 +
1622931061.753119-CDS-H-elongata_contig67097:1247..17871622931061.753119-CDS-H-elongata_contig67097:1247..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67097 1248..1787 +
1691679682.029143-CDS-H-elongata_contig67097:1247..17871691679682.029143-CDS-H-elongata_contig67097:1247..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67097 1248..1787 +
1622931061.7702975-CDS-H-elongata_contig67097:2281..26621622931061.7702975-CDS-H-elongata_contig67097:2281..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67097 2282..2662 +
1691679682.039112-CDS-H-elongata_contig67097:2281..26621691679682.039112-CDS-H-elongata_contig67097:2281..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67097 2282..2662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67097.14319.1

>prot_H-elongata_contig67097.14319.1 ID=prot_H-elongata_contig67097.14319.1|Name=mRNA_H-elongata_contig67097.14319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=365bp
QIRTVCKDPKIQRLAEAKIRNRAEACQMEELRKAVGFRRVIDEISESGKP
VISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAI
AEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEA
DRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAA
AAMLGLGVGVEEIKGISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPT
PPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTSGVAEC
PSAEAALDLIRSAASGSTMDKAGENAVDPKKLRLSDMKVVQLNPSLLEGD
EDNGPEKNAKRPRQ*
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mRNA from alignment at H-elongata_contig67097:584..2662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67097.14319.1 ID=mRNA_H-elongata_contig67097.14319.1|Name=mRNA_H-elongata_contig67097.14319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-elongata_contig67097:584..2662+ (Himanthalia elongata Himel1 dioecious)
CAGATTCGGACGGTGTGTAAAGACCCAAAGATCCAACGCCTTGCCGAAGC GAAGATCCGGAATAGAGCAGAGGCGTGTCAGATGGAAGAGCTACGCAAGG CCGTGGGCTTCCGCCGGGTCATCGACGAGATATCCGAATCGGGAAAGCCG GTCATCTCCCACAACGGGCTAATGGTGCTATTGCGTGCTACTCGACTTCG TTAGAATTATTGAACTGCTTTTTGTTAGGTCCTGTGTCGTGTGGTATGTA TTGTATCTATTTGGCCCTTTAATCTCCAGGAAAGGAAAGGAAAAAAAAAC TAGGGCGGTTGCAGTAGTGTTTGCCCACGTCGTAAGCTCAATTCCTTCGA AAACATGGCAAGATTTATCTCGTGTGTCGCATCAGAGATCCTTGGCGCCG TCGAATATCTCTTACGACAGCCGTCTCTCCTCTCCGTGTTACCCGGTAAT GATTTCTAGTATTTTCCATATATCGTTCCTTGTTCTGTCGAACCCTGTTC CCGCTTCGCTTCGGTCGCGACTGCCGTTCGCTGTCCCCTACCGTCACGAC ACTACTAGTACTAGTACGTAAAATCTGAAATATTACCTATAATCATTCTA AACGATATACTCGTACGGTACCCTAACCCAACCAAGCGATTCGACGCGAT ATCCCATCATGCAGGATATCTTCCACACACACGACAAGTTTGTAGGCCCT ATTCCGGCTGACTTCGAGGAGGGCACCCGCGCCATGCACGCCTTCTTGCC GAGCCTGTTCGACAGCAAGGTGGTCATGAGCAAGGCCATAGCGGAAGGGA TGTCGCTCCCTTGCACAACGCTAGGGGAAGCGTTCACTTGGCTTCGCCAA AAATTTGCGGCGGTGACTGACAAAGGTTCTGAGGAACTGTCGACGGTAAC TGATGAAGCTCTCGAGAAAAATGGCGAGGCCGGAGAAGCCGACCGCTCCC GTGCTAAGGAACAGGACAAGCGCAGCATGCAGGCTTGGTATGCCTCGTTT GCTCCAGGGTTCGAAGAGCGTTACACGGCGCAAGCTAGGGAGCACGAAGC CGGGTACGACGCCTACCTCACCGGATGTTGCTTCGCGGCGGCGGCCATGC TGGGACTGGGCGTTGGGGTGGAGGAGATCAAGGGCATCTCTTCGGGAGGG GAGATTCCTGAGGCTCTGGCGCCGGTGTCAAATACGCTGCCGCTTTACAG GGTGGTGAGTTGAGTGACTTTATGAGTGATCGCATCTGACGTGCGTTCTT GTAGTGACCCCTGACGATTCTGGATATTTGTACGCGGTTCATTGCCTAAC GTTTTTTTTGCAGTGCCTAACGTTGTAGGATACGTCGTGTGCGTGGACAG GGTGATTGGTTGGGGGATTTTTTGCGTTTTGGGCAATTATAAGCAATTAT AAGCAAACAGGAGGGGACGGAAACCGCCACATACACACATATTTCCAACT CATGCGACTCTGCTAGAAAATAACGCAGTAGATTTGATCGACCGAAGAAA TCTCGCTCGACCTAGCTTTTAAGAGTTCGCACGTACTTGATCGACCTTAA TATTTCCTTTTGTAGCTGAAAAATATGCTGTAGCTGTAGCTGTAGCTGTA GCATAGCGTCCGCATTCGAGCAAAAGAATGCTGCCCCTTCAAGATTGATC CATATTTACTCGCCGCTTCCTTCCTCCACCCCGCTCCCCCCCCCGAAGCT TGCAGGACAGAGGATGTCCCTGCCGGGGCCCACGCCCCCTCCTGACTTCA GCTGCTACTTGCATGTCTCGGGATTCCCTCCCGCTGCAAAAACCGATGAC ATCATGCGCCCGGTCAAGGCCGTGAGCGGATGCGAATCGACATGGTTCCA CTGGATTGACGACACCTCGGGGGTGGCCGAGTGTCCGTCCGCAGAAGCGG CCCTAGATCTAATTCGATCCGCCGCTTCCGGTAGCACGATGGACAAGGCG GGAGAAAACGCCGTGGACCCGAAGAAGCTTCGACTTAGCGACATGAAAGT GGTGCAATTGAATCCTTCCCTCTTGGAAGGTGACGAGGACAATGGTCCCG AAAAGAATGCGAAGCGCCCGCGGCAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig67097:584..2662+

>mRNA_H-elongata_contig67097.14319.1 ID=mRNA_H-elongata_contig67097.14319.1|Name=mRNA_H-elongata_contig67097.14319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2190bp|location=Sequence derived from alignment at H-elongata_contig67097:584..2662+ (Himanthalia elongata Himel1 dioecious)
CAGATTCGGACGGTGTGTAAAGACCCAAAGATCCAACGCCTTGCCGAAGC
GAAGATCCGGAATAGAGCAGAGGCGTGTCAGATGGAAGAGCTACGCAAGG
CCGTGGGCTTCCGCCGGGTCATCGACGAGATATCCGAATCGGGAAAGCCG
GTCATCTCCCACAACGGGCTAATGCAGATTCGGACGGTGTGTAAAGACCC
AAAGATCCAACGCCTTGCCGAAGCGAAGATCCGGAATAGAGCAGAGGCGT
GTCAGATGGAAGAGCTACGCAAGGCCGTGGGCTTCCGCCGGGTCATCGAC
GAGATATCCGAATCGGGAAAGCCGGTCATCTCCCACAACGGGCTAATGGA
TATCTTCCACACACACGACAAGTTTGTAGGCCCTATTCCGGCTGACTTCG
AGGAGGGCACCCGCGCCATGCACGCCTTCTTGCCGAGCCTGTTCGACAGC
AAGGTGGTCATGAGCAAGGCCATAGCGGAAGGGATGTCGCTCCCTTGCAC
AACGCTAGGGGAAGCGTTCACTTGGCTTCGCCAAAAATTTGCGGCGGTGA
CTGACAAAGGTTCTGAGGAACTGTCGACGGTAACTGATGAAGCTCTCGAG
AAAAATGGCGAGGCCGGAGAAGCCGACCGCTCCCGTGCTAAGGAACAGGA
CAAGCGCAGCATGCAGGCTTGGTATGCCTCGTTTGCTCCAGGGTTCGAAG
AGCGTTACACGGCGCAAGCTAGGGAGCACGAAGCCGGGTACGACGCCTAC
CTCACCGGATGTTGCTTCGCGGCGGCGGCCATGCTGGGACTGGGCGTTGG
GGTGGAGGAGATCAAGGGCATCTCTTCGGGAGGGGAGATTCCTGAGGCTC
TGGCGCCGGTGTCAAATACGCTGCCGCTTTACAGGGTGGATATCTTCCAC
ACACACGACAAGTTTGTAGGCCCTATTCCGGCTGACTTCGAGGAGGGCAC
CCGCGCCATGCACGCCTTCTTGCCGAGCCTGTTCGACAGCAAGGTGGTCA
TGAGCAAGGCCATAGCGGAAGGGATGTCGCTCCCTTGCACAACGCTAGGG
GAAGCGTTCACTTGGCTTCGCCAAAAATTTGCGGCGGTGACTGACAAAGG
TTCTGAGGAACTGTCGACGGTAACTGATGAAGCTCTCGAGAAAAATGGCG
AGGCCGGAGAAGCCGACCGCTCCCGTGCTAAGGAACAGGACAAGCGCAGC
ATGCAGGCTTGGTATGCCTCGTTTGCTCCAGGGTTCGAAGAGCGTTACAC
GGCGCAAGCTAGGGAGCACGAAGCCGGGTACGACGCCTACCTCACCGGAT
GTTGCTTCGCGGCGGCGGCCATGCTGGGACTGGGCGTTGGGGTGGAGGAG
ATCAAGGGCATCTCTTCGGGAGGGGAGATTCCTGAGGCTCTGGCGCCGGT
GTCAAATACGCTGCCGCTTTACAGGGTGCTTGCAGGACAGAGGATGTCCC
TGCCGGGGCCCACGCCCCCTCCTGACTTCAGCTGCTACTTGCATGTCTCG
GGATTCCCTCCCGCTGCAAAAACCGATGACATCATGCGCCCGGTCAAGGC
CGTGAGCGGATGCGAATCGACATGGTTCCACTGGATTGACGACACCTCGG
GGGTGGCCGAGTGTCCGTCCGCAGAAGCGGCCCTAGATCTAATTCGATCC
GCCGCTTCCGGTAGCACGATGGACAAGGCGGGAGAAAACGCCGTGGACCC
GAAGAAGCTTCGACTTAGCGACATGAAAGTGGTGCAATTGAATCCTTCCC
TCTTGGAAGGTGACGAGGACAATGGTCCCGAAAAGAATGCGAAGCGCCCG
CGGCAGTAACTTGCAGGACAGAGGATGTCCCTGCCGGGGCCCACGCCCCC
TCCTGACTTCAGCTGCTACTTGCATGTCTCGGGATTCCCTCCCGCTGCAA
AAACCGATGACATCATGCGCCCGGTCAAGGCCGTGAGCGGATGCGAATCG
ACATGGTTCCACTGGATTGACGACACCTCGGGGGTGGCCGAGTGTCCGTC
CGCAGAAGCGGCCCTAGATCTAATTCGATCCGCCGCTTCCGGTAGCACGA
TGGACAAGGCGGGAGAAAACGCCGTGGACCCGAAGAAGCTTCGACTTAGC
GACATGAAAGTGGTGCAATTGAATCCTTCCCTCTTGGAAGGTGACGAGGA
CAATGGTCCCGAAAAGAATGCGAAGCGCCCGCGGCAGTAA
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