mRNA_H-elongata_contig67052.14313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67052.14313.1
Unique NamemRNA_H-elongata_contig67052.14313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.910e-16
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            MC+EQLTYAGVFEAVQIRKSG+PFRLPH+RFANRYRCL
Sbjct:  688 MCIEQLTYAGVFEAVQIRKSGFPFRLPHQRFANRYRCL 725
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.470e-15
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            MC+EQLTYAGVFEAV IRK+GYPFRL HRRFANRYRCL
Sbjct:  793 MCIEQLTYAGVFEAVAIRKTGYPFRLTHRRFANRYRCL 830
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A812VXM7_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VXM7_SYMMI)

HSP 1 Score: 69.7 bits (169), Expect = 7.050e-13
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            MC+EQLTYAGVFEAVQIRK+GYPFRL H RFA RYR L
Sbjct:   67 MCLEQLTYAGVFEAVQIRKTGYPFRLTHERFAQRYRYL 104
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A7S3AH84_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AH84_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 3.390e-12
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            + +EQL Y+GVFEAV IRK GYPFRLPH +FANRYRC+
Sbjct:   59 LSLEQLKYSGVFEAVTIRKCGYPFRLPHLQFANRYRCI 96
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A6S8C1X6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8C1X6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.220e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    4 CMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            C+EQLTYAGVFEAV+IRKSGYPFRL HR+FA RYR L
Sbjct:  705 CVEQLTYAGVFEAVKIRKSGYPFRLAHRQFAARYRIL 741
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: F0Y2B5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2B5_AURAN)

HSP 1 Score: 66.6 bits (161), Expect = 8.530e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    7 MEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            +EQ+TYAGVFEAV+IRKSGYPFRLPHRRFA RYR L
Sbjct:  704 IEQMTYAGVFEAVKIRKSGYPFRLPHRRFAARYRPL 739
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A7S1U0W2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0W2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.970e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRC 111
            MC+EQLTYAGVFEAV+IRKSG+PFRLPH  F  RY C
Sbjct:  389 MCIEQLTYAGVFEAVKIRKSGFPFRLPHGHFYARYNC 425
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A7S2DBZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBZ8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.910e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            M MEQLTYAGVFEA++IRK+GYPFRLPH  F  +YRCL
Sbjct:  253 MSMEQLTYAGVFEAMKIRKTGYPFRLPHSTFFAKYRCL 290
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A6A7FYR0_9CRUS (Class VII unconventional myosin (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FYR0_9CRUS)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-10
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 CMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            C EQLTY+GVFEAV+IRKSGYPFRL H+ F  RY CL
Sbjct:  262 CHEQLTYSGVFEAVKIRKSGYPFRLKHQAFVERYACL 298
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BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Match: A0A6B2KWF1_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KWF1_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 1.930e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL 114
            M ++QLTYAGVFEAV IR+ GYPFRL H RF  RYRCL
Sbjct:  579 MSLKQLTYAGVFEAVSIRRQGYPFRLTHERFYKRYRCL 616
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67052.14313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSK5_9PHAE3.910e-1692.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA6.470e-1589.47P-loop containing nucleoside triphosphate hydrolas... [more]
A0A812VXM7_SYMMI7.050e-1384.21Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S3AH84_9EUKA3.390e-1273.68Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A6S8C1X6_9STRA6.220e-1283.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y2B5_AURAN8.530e-1286.11Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1U0W2_9STRA2.970e-1178.38Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2DBZ8_9STRA3.910e-1176.32Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6A7FYR0_9CRUS1.420e-1075.68Class VII unconventional myosin (Fragment) n=2 Tax... [more]
A0A6B2KWF1_9EUKA1.930e-1073.68Uncharacterized protein n=1 Tax=Arcella intermedia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67052contigH-elongata_contig67052:32..145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog44056.XP_009034269.1
KEGG koko:K10357,ko:K21868
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.188531-CDS-H-elongata_contig67052:31..1451622931061.188531-CDS-H-elongata_contig67052:31..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67052 32..145 +
1691679681.8241606-CDS-H-elongata_contig67052:31..1451691679681.8241606-CDS-H-elongata_contig67052:31..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67052 32..145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67052.14313.1prot_H-elongata_contig67052.14313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67052 32..145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67052.14313.1

>prot_H-elongata_contig67052.14313.1 ID=prot_H-elongata_contig67052.14313.1|Name=mRNA_H-elongata_contig67052.14313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MCMEQLTYAGVFEAVQIRKSGYPFRLPHRRFANRYRCL
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mRNA from alignment at H-elongata_contig67052:32..145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67052.14313.1 ID=mRNA_H-elongata_contig67052.14313.1|Name=mRNA_H-elongata_contig67052.14313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig67052:32..145+ (Himanthalia elongata Himel1 dioecious)
ATGTGTATGGAACAGCTCACGTACGCTGGCGTGTTCGAGGCGGTTCAGAT
CCGTAAGTCCGGCTACCCCTTCCGACTCCCGCACCGGCGTTTCGCGAACC
GATACCGCTGCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig67052:32..145+

>mRNA_H-elongata_contig67052.14313.1 ID=mRNA_H-elongata_contig67052.14313.1|Name=mRNA_H-elongata_contig67052.14313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig67052:32..145+ (Himanthalia elongata Himel1 dioecious)
ATGTGTATGGAACAGCTCACGTACGCTGGCGTGTTCGAGGCGGTTCAGAT
CCGTAAGTCCGGCTACCCCTTCCGACTCCCGCACCGGCGTTTCGCGAACC
GATACCGCTGCCTGATGTGTATGGAACAGCTCACGTACGCTGGCGTGTTC
GAGGCGGTTCAGATCCGTAAGTCCGGCTACCCCTTCCGACTCCCGCACCG
GCGTTTCGCGAACCGATACCGCTGCCTG
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