mRNA_H-elongata_contig6700.14305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6700.14305.1
Unique NamemRNA_H-elongata_contig6700.14305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: A0A126X2D9_9PHAE (Putative LOV domain-containing protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A126X2D9_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 1.020e-138
Identity = 213/234 (91.03%), Postives = 223/234 (95.30%), Query Frame = 1 
Query:   55 VGKRGVG-GKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTETSSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKREGEE 753
            VGKRG G GKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVT+LQEENEKLRGAIRANLGA+EAK+LL+QTE+SSLI+S PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRK   +  D SVCLRNYRVDGAMFWNQFFIAALRDSEG VINYVGVQC+VDEDFVRA+Q+ EGEE
Sbjct:   18 VGKRGSGTGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRANLGAEEAKELLAQTESSSLIASKPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGAVINYVGVQCKVDEDFVRAVQRTEGEE 251
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: A0A126WZN1_9PHAE (Putative LOV domain-containing protein n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A126WZN1_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 4.200e-137
Identity = 215/249 (86.35%), Postives = 229/249 (91.97%), Query Frame = 1 
Query:   13 ASTSGLDEE-DDEERVGKRGVGGK-RPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTETSSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKREGEE 753
            A+ +GLD + DD E+ GKR  GG  RPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIR+NL A+EAK+LL QTETS+LI+S+PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRK   +  D SVCLRNYRVDG MFWNQFFIAALRDSEG VINYVGVQC+VDEDFVRA QK+EG+E
Sbjct:   23 AAAAGLDADGDDGEKGGKRSGGGXXRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRSNLSAEEAKELLEQTETSNLIASNPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGVMFWNQFFIAALRDSEGAVINYVGVQCKVDEDFVRASQKKEGDE 271
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: D8LT99_ECTSI (Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepID=D8LT99_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 9.020e-137
Identity = 227/256 (88.67%), Postives = 239/256 (93.36%), Query Frame = 1 
Query:   58 GKRG-VGGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTET-SSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKREGEEXXXXXXXXXXXXXRSDTEHKDA 819
            GKRG V GKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVT+LQEENEKLRGAIR+NLG +EAK+LL++TET ++LISS PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRK   +  D SVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQC+VDEDFVRA+Q+ EGEE   XXXXXXXXXX SDTE KDA
Sbjct:   19 GKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEAKELLAETETPTTLISSRPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAVQRTEGEEDGEXXXXXXXXXX-SDTEEKDA 273
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: A0A126X307_SARHM (Putative LOV domain-containing protein n=1 Tax=Sargassum hemiphyllum TaxID=127544 RepID=A0A126X307_SARHM)

HSP 1 Score: 402 bits (1032), Expect = 1.390e-136
Identity = 235/267 (88.01%), Postives = 245/267 (91.76%), Query Frame = 1 
Query:   40 DDEERVGKRGVGGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTETSSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKRE----GEEXXXXXXXXXXXXXRSDTEHKDAPRG 828
            D++ R G+RG GGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIR+NLG +EAK+LL+QTETSSLISSSPG+ATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRK   +  D SVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQC+VDEDFVRA QKRE       XXXXXXXXXXXXXRSD E KDA  G
Sbjct:  186 DEDGRQGRRG-GGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRSNLGPEEAKELLTQTETSSLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCKVDEDFVRAAQKREEGXXXXXXXXXXXXXXXXXXRSDAEEKDAAVG 451
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: A0A126X1C8_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A126X1C8_9PHAE)

HSP 1 Score: 376 bits (966), Expect = 1.270e-129
Identity = 198/213 (92.96%), Postives = 205/213 (96.24%), Query Frame = 1 
Query:  106 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTETSSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKRE 744
            MTE+QRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLG +EAK+LL+QTETSSLISSSPG+ATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRK   +  DASVCLRNYRVDGAMFWNQFFIAALRDSEG VINYVGVQC+VDEDFVRA QKRE
Sbjct:    1 MTEKQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTETSSLISSSPGEATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDASVCLRNYRVDGAMFWNQFFIAALRDSEGIVINYVGVQCKVDEDFVRAAQKRE 213
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: X2CR90_SACJA (Aureochrome2 (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=X2CR90_SACJA)

HSP 1 Score: 326 bits (835), Expect = 2.390e-110
Identity = 172/184 (93.48%), Postives = 178/184 (96.74%), Query Frame = 1 
Query:  106 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTETSSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAAL 657
            MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAK+LL+QTE+SSLI+S+PGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRK   +  D SVCLRNYRVDGAMFWNQFFIAAL
Sbjct:    1 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKELLAQTESSSLIASNPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAAL 184
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: A0A7S2GCF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCF2_9STRA)

HSP 1 Score: 311 bits (796), Expect = 8.430e-104
Identity = 164/220 (74.55%), Postives = 186/220 (84.55%), Query Frame = 1 
Query:  100 RNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTETSS--LISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKREGEE 753
            RNMTE+Q+++RRERNREHAKRSRVRKKFLLESLQ+SV ALQ+ENEKLR AI+ +L   +A  LLSQ  T +  LI+S P DAT++LDDPDYSLVKALQTAQQNFVITDP+LPDNPIVFASQGFL LTGY LDQVLGRNCRFLQGP TDPKAVEKIR       DASVCL NYR+DG+ FWNQFF+A LRDS+G V+NYVGVQC+V EDF RA+ + EG E
Sbjct:   14 RNMTEKQKVERRERNREHAKRSRVRKKFLLESLQQSVNALQQENEKLRSAIKEHLNPQQADSLLSQCSTKAGPLIASDPNDATRILDDPDYSLVKALQTAQQNFVITDPSLPDNPIVFASQGFLSLTGYQLDQVLGRNCRFLQGPQTDPKAVEKIRNAVADGIDASVCLLNYRIDGSTFWNQFFVAPLRDSDGQVVNYVGVQCKVSEDFARAIAQSEGAE 233
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: A0A835YVH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH1_9STRA)

HSP 1 Score: 312 bits (800), Expect = 3.690e-102
Identity = 164/220 (74.55%), Postives = 193/220 (87.73%), Query Frame = 1 
Query:   94 GGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTETSS---LISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKRE 744
            G R+M+EQQ+L+RRERNREHAKRSRVRKKFLLESLQKSV+ALQEENE+LRGAIR N    +A++LL++TE      +++++PG+A +VLDDPDYSLV+ALQTAQQNFVITDPTLPDNPIVFASQGFL+LTGYTLDQVLGRNCRFLQGPDTDPKAVE+IRK      D SVCL NYR DG  FWNQFFIA+LRD++G +INYVGVQC+V E+FV A+QK+E
Sbjct:  167 GSRSMSEQQKLERRERNREHAKRSRVRKKFLLESLQKSVSALQEENERLRGAIREN--CTDAQELLTRTEAGGGGGVLAATPGEANRVLDDPDYSLVRALQTAQQNFVITDPTLPDNPIVFASQGFLDLTGYTLDQVLGRNCRFLQGPDTDPKAVERIRKAIESGCDTSVCLLNYRSDGTQFWNQFFIASLRDADGKIINYVGVQCKVSEEFVTAVQKQE 384
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: A0A7S1UCA1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCA1_9STRA)

HSP 1 Score: 295 bits (754), Expect = 4.700e-96
Identity = 156/218 (71.56%), Postives = 182/218 (83.49%), Query Frame = 1 
Query:   94 GGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQTET-SSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKRE 744
            GGRNMTE+Q+L+RRERNREHAKRSRVRKKFLLESLQKSV ALQ EN +LR AIR  +  DEA+D+L  TE   SL+++S  +AT++LDDPDYSLVKALQTAQQNFVITDP LPDNPIVFAS GFL LTGYTLDQVLGRNCRFLQGPDTDPKAV KIR+      D SVCL NYR+DG+ FWNQFF+AALRD  G + NYVGVQC+V +D+ + +++ +
Sbjct:  106 GGRNMTEEQKLERRERNREHAKRSRVRKKFLLESLQKSVDALQAENLRLRAAIREQI-PDEAEDVLRATELRDSLLANSAAEATQILDDPDYSLVKALQTAQQNFVITDPNLPDNPIVFASAGFLTLTGYTLDQVLGRNCRFLQGPDTDPKAVAKIREAIADGHDCSVCLLNYRIDGSTFWNQFFVAALRDGRGEIANYVGVQCQVSDDYAKIVRQED 322
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BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Match: W7TTA1_9STRA (Aureochrome1-like protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTA1_9STRA)

HSP 1 Score: 288 bits (737), Expect = 4.620e-95
Identity = 153/218 (70.18%), Postives = 180/218 (82.57%), Query Frame = 1 
Query:  106 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANL--GADEAKDLLSQTETS---SLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKRE 744
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV ALQEEN+KLRGAIR++L  GAD   DLL   E     S+++S P  ATK+LDDPDY+LVKALQTAQQNFVITDPTLPDNPIV+AS GFL LTGY +DQ+LGRNCRFLQGPDTDP AV+KIR+      D SVCL NYR DG+ FWNQFFIAALR ++G ++NYVGVQC+V E++   + K+E
Sbjct:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGAD---DLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKE 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6700.14305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A126X2D9_9PHAE1.020e-13891.03Putative LOV domain-containing protein n=4 Tax=Scy... [more]
A0A126WZN1_9PHAE4.200e-13786.35Putative LOV domain-containing protein n=1 Tax=Dic... [more]
D8LT99_ECTSI9.020e-13788.67Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A126X307_SARHM1.390e-13688.01Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126X1C8_9PHAE1.270e-12992.96Putative LOV domain-containing protein n=1 Tax=Sar... [more]
X2CR90_SACJA2.390e-11093.48Aureochrome2 (Fragment) n=1 Tax=Saccharina japonic... [more]
A0A7S2GCF2_9STRA8.430e-10474.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YVH1_9STRA3.690e-10274.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1UCA1_9STRA4.700e-9671.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TTA1_9STRA4.620e-9570.18Aureochrome1-like protein n=3 Tax=Monodopsidaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6700contigH-elongata_contig6700:2486..8895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.5
Seed ortholog evalue1.6e-109
Seed eggNOG ortholog2880.D8LT99
EggNOG free text desc.PAS domain
EggNOG OGs2BEDG@1,2S14J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionaureochrome 3
Ec32 orthologEc-12_005760.1
Exons5
Model size831
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6700.14305.1prot_H-elongata_contig6700.14305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6700 2486..8895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.1481376-CDS-H-elongata_contig6700:2485..26191622931060.1481376-CDS-H-elongata_contig6700:2485..2619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 2486..2619 +
1691679681.4196258-CDS-H-elongata_contig6700:2485..26191691679681.4196258-CDS-H-elongata_contig6700:2485..2619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 2486..2619 +
1622931060.1658251-CDS-H-elongata_contig6700:3606..38171622931060.1658251-CDS-H-elongata_contig6700:3606..3817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 3607..3817 +
1691679681.4357226-CDS-H-elongata_contig6700:3606..38171691679681.4357226-CDS-H-elongata_contig6700:3606..3817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 3607..3817 +
1622931060.1883578-CDS-H-elongata_contig6700:4305..44521622931060.1883578-CDS-H-elongata_contig6700:4305..4452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 4306..4452 +
1691679681.446408-CDS-H-elongata_contig6700:4305..44521691679681.446408-CDS-H-elongata_contig6700:4305..4452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 4306..4452 +
1622931060.2020671-CDS-H-elongata_contig6700:7628..77151622931060.2020671-CDS-H-elongata_contig6700:7628..7715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 7629..7715 +
1691679681.4579468-CDS-H-elongata_contig6700:7628..77151691679681.4579468-CDS-H-elongata_contig6700:7628..7715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 7629..7715 +
1622931060.2179697-CDS-H-elongata_contig6700:8643..88951622931060.2179697-CDS-H-elongata_contig6700:8643..8895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 8644..8895 +
1691679681.475131-CDS-H-elongata_contig6700:8643..88951691679681.475131-CDS-H-elongata_contig6700:8643..8895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 8644..8895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6700.14305.1

>prot_H-elongata_contig6700.14305.1 ID=prot_H-elongata_contig6700.14305.1|Name=mRNA_H-elongata_contig6700.14305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
MKSAASTSGLDEEDDEERVGKRGVGGKRPRQGGRNMTEQQRLDRRERNRE
HAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKDLLSQT
ETSSLISSSPGDATKVLDDPDYSLVKALQTAQQNFVITDPTLPDNPIVFA
SQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEKIRKVRRRVQDASVCL
RNYRVDGAMFWNQFFIAALRDSEGTVINYVGVQCRVDEDFVRAMQKREGE
EEEDEEEEDDDEDDRSDTEHKDAPRG*
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mRNA from alignment at H-elongata_contig6700:2486..8895+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6700.14305.1 ID=mRNA_H-elongata_contig6700.14305.1|Name=mRNA_H-elongata_contig6700.14305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6410bp|location=Sequence derived from alignment at H-elongata_contig6700:2486..8895+ (Himanthalia elongata Himel1 dioecious)
ATGAAATCGGCTGCATCGACATCTGGGCTTGACGAGGAGGACGATGAAGA
GAGGGTAGGCAAACGCGGGGTGGGGGGGAAGAGGCCTCGGCAAGGGGGGC
GAAACATGACGGAACAACAGCGGCTCGATAGAAGGTACGTGAGAAGCCTG
TCTGTGTTTGCTCTTCAAGTGTGTGCTACATTGTGTATCCCGCCGGAAGG
TCATGGTGGACGAGCGTGCAGGGTTCGCTTATCTTAAGGGGGTTTTCTCT
TTCTTCGGTGCCCTGGATTGGCGAAGGGTGTTAATGAGGCTGGGAAAGAA
GTGAGGGCATGCGTTTTGGGGGAAACATATGCTCACTTTGTTAACTCGCG
GTCAGGACCGCCTTTTCGTTGTTGCCATAAAGTCGTGCTATGACCGTGAG
TCCACTTGATGCGGTCGTAGCGATATTCTGTGTTGGCGCTAGCTAGCCGC
TCTAATAATAAGTAACCCATCCAGCGTGCGTTACCCTTGAGACGGTTTTC
CGTCTGCCCAAGGCAGCTTAACCGCTGCTCTTACCGAGGCTCGAACTGAG
GTAAGAGTAAGTCTTGACACCTCGTTTCGTGGCGCCTCCTTCTTTCTTTG
CCGATCGAATTCGCGTAGATTCCTCGTATGCGTAGATTCCTCGTATGCTC
TCTAAGATACGATAAGTAGCGCTATCGCGTGCTGTGGGATAATTCCGTGA
TTGAGTTTGGCAGAGAGAGACACAAAATCATGCGACTGCGACAAAAGACT
CGCGGACGCTCCATCTCGCGAGGGCGCGCAGCACGCGGCTGGAGTCTATC
CACGGTCTGGCATTGCGAGTCGCTCCTATCGTGACCGTGGCACAACCGAG
ATCGACGCACCATCCGCACTTCCCGCCGTCTTCCACCTCTCCAGAACTCC
GGTAGACGGATCTCCTCGTCCAGCCGTCGCTTCTGATGACACACCACACC
TTTTCGCGCCACCATGGCTCGAGATGCCTTATTATTTTACCTTTGTAGTG
ACGCTTGTACCACAAAAAGCAGAAACCTCTCTTGGTCCGTCGCCGCTATC
AACACCATTGCAATTCTGCTTGGCTTTGTGTGTGTGTGTCTTGCGTAATG
TGCGTATTTGCCGAAATGTAGGGAGCGCAATCGAGAGCACGCGAAGCGTT
CGCGTGTGCGGAAGAAGTTCCTGTTGGAGTCACTACAGAAGAGCGTCACG
GCGCTGCAAGAGGAGAATGAAAAGCTGAGGGGCGCAATACGGGCCAACCT
TGGGGCGGACGAGGCGAAGGATCTGCTCTCGCAGACGGAGACGTCGAGCC
TGATCAGCAGTTCCCCGGGAGACGCCACGAAGGTACAGCTCTTCCCAACG
TCGGTAGACAGGCCAGACTGGCAGATAGGAGAAAACGAGCGTGTTGGAGG
AAGCGCGTTGTGTTTTTTTGCGAGTCACTTATTTTGCCCACACAGGAAGG
GTGGGGGGGGTGCTGCAGTGGGTTGTAGTGGAAATTTAAAAATATAAAAT
AAAACTGTTTTCGGCGTCGGGGACAGCATAATTACTATGTGTGTTGTTTT
TTGTTTTGTACTGCAGGTACTGATGTAGGATATTTTGTGGTTGTGTTGGT
TTGTGTGAGTTAGGTGTTGTCATCGAGAAGTGTCGCGCGACGGTGTGTGC
GTGTACAGCACCCGGGCCTGAACCACGGGTGGGTTCGCCGGGCCCTAGTG
TTTCTAACTTAAGCATGCCTCCTTTTACGTGAAGGCGCACGGTGACGGGC
TGCCTGCTGCTGCTGTGTGATGACTGCCGCTTGTGGGGTGTGAAAAACTG
GAATCCTCGTGCCCGCGCAGGTCCTGGACGATCCCGATTACTCCCTGGTG
AAGGCGTTGCAGACAGCACAGCAAAACTTCGTCATCACCGACCCGACGTT
GCCGGACAACCCCATCGTTTTCGCCAGCCAGGGCTTCCTTGAGCTCACCG
GTTACACCCTCGACCAGGTAAACATATACTTCATATATATATATATATAT
ATATATATAGGGAAGTATACCACGAGAGATGTTTATACCCTTAAATGTGT
AATTGGCACAAGGGACGCTACGAAACGGTGCCGTGTGGGATGTATGCGTG
CTTACTGTAGCCTCTCTTGTCAAATACGAGGGTCGCGCGCGCACACACGG
TCCTTTCAAAGGCCTTCGTTCCGTCAGGTAACTATCCCCCACCTACCCTA
CCATCCTTTTGAGGACGCGTGGTCGATGGCCTAACAGCTAAAGGCATGCT
AAACTTTAGCACGTCCCCCTCCACCGTATGTTTTCATTCTGGAGCGAGAT
GGGACACAGTTCGTAGAGGGGTGTCTGATGTACAAGGGCATGTGCCTACT
ATTTAGTTTTTTGGTGTTGAGTAAGGCGTAATTCTAGCTCTTAGCGTGAT
CCCCAAAGGCAACCTACCATCTTTTTTTGTTTATGCCGTTGGTAAATATA
TTTAGCTATAATAAAAGGGCCACTTCCTGTGCTGTTAGAATTTTTAACAT
GAGCCAAAATTCTGCATCTTACGCTGTTAGAAAAAGGCGTTTTTTAATCG
TCCGATTTCTAATACAGTAGGGGTGTGACAACGGCCCTCGACCCTCTTGT
ATCGGAGCCCCCTCTTATATCGGGGTCCTCTATAGTGGGTTACCCTCTTT
TAACGGGAAAATCGGGAATAACGAGAAACGAAGGCACTTACAGCACAGCG
TACAGTATCAGTACTATGCCGTTTATTATGTGTATGCATGTGTGGTGGAC
TGATGTAGACCGAGTCGGCATGTCCAAAGCAAGCCAGGCGATTGTGATCG
TGTTAGCAACGCTTTCCTTTTGGTGTTCAGCTCGATTCATGGAGTGATGA
CATCTCGCTGCAGAGAAAAAATAAATGACGCTTCAGCCATTGATACGAGA
CAATTTACATGTGCATGCATTAAAACGCATACAGAGTCGCAGACAACAAC
GTTTTAGAAAGCCTCGACCACCTCCCCGACCATGAAAAACTTCTATGTAC
ACGGGCTACAACACAAGCTGTATTATGCACAACACGAAGATCTACCGCCA
TTTGCCGCACACCAGACTCGGGTTTGCATAAGCATACGCATTGCCTGTGT
TTAAGAAAAGTCCCTAATATCTGCCTTTCGTCTAGGTTTAGAGGCGTATG
CTGTAATGAACGACATTCTAGCCTTGCGCAAAAAGCCCCCTGCTTCTACA
TTGCCAGACGACTCCGCGTAGTGCTCCAGCGGGCCGAAGAATGAAGATAG
TTCTGCGTACGGTGGCGGAGGCCACTTCCCTCTCCCAGCCCACCCCGTGC
GTTTGTCCACCCCGTGCCTTTGTCACCGTCGAGTAGCTCTAGCTCGTCGT
CAGAAGGTGTTGGCCTCCTCCACGAAGATGCTGTCGATTTTCTCCCACAG
CACGTCCTGCGCGTCCTGCTGCAAAGCTTGCTGGAGCTCCTCTTGTTTCT
CCAGCCCTCCCCAGCCCAAGGTCACATCGATGGCGACCATATGGGCAGGC
TGGCCCGGGATGATAGCTGAATATTGACGTGCACCAGCTGCAGAGGTCTT
CTCCTCCAGAGTTTTCCTCTGCTCAGCGACCTTGCTCACCATGCTTACGC
CACACTTGCACCTGCGCGCGATCTCCGCGTGCGATGTCTTCTGCTTTAAC
AGCCCGAGCATCTCGATCTTATCACCACCGCGCGCAGACTTCTTGGCGGT
CGCCGACCTTCCTTCAAGAAACGTTGAGGCGATCGCTTTGCGCTTACCAG
CGCTCGAGGAACTGCCTGGAGCCGGCTTCTTGTTGGCGCATGATGTGCAG
ATGCGGTATGTCTCGATTAGACTTCCCTCGTCGGTACTCTCCACCTGCTC
CACACTGCCACATTCTTCGTGAAGCCGGCTGCCACAACCTCCGCGACACA
TATACCCATCGGGAGGCTCAATCGCGACGTCTGGTGTGTATTGCTGCTGC
TGGTGTGGTTGGCGCCGCAATGATATGTGTGTGTGTGTGTGTGTGTGTAA
AAGAGCCGAGGGAGCCACACAGGTGACAGTCCCGAACCCCTCTATAGTGG
GGTGACCCCACCATAGAGGATCCGGTCTCTATATAAAAGGGTGACCCTAC
TATAGCGGCTCAAGTTTTTGACACAAGTGATTTATACCCTCTGATATCGT
AGCCCCCTCTTACTCACCACCCTCTCCCTCTGATATTATAGCGGAGCCAC
TACTATATAGATTTCTGATCTGTGTGTCTTGTTAGATTTGTAAAAAAATC
AGCTGCTTTCTAACAAGATGCCCAGATCAGAAATCGATTATAAAAAACGG
TTTGAAATCTCGCCGCCTTTAATATATGCTGTGTTATCACCACCAGCACA
ACACAACACACACACACACACACACACACACACACCACATCAACCGTGCT
GGGTTGGCTGCCACTATTGCTGCTGCTACTTGTCGCGGGCGGCAGCGTTT
CATTGTCTTGGGTCATGGCGTCGCGGAAACAAAGGAAGGAAGGAGAGTCT
ACTGCTGCTGTACAACTGTAAAACACAACAACTCTCGAGTGATGAAACAT
CCTTAGCTCACCTTGTGTTCCAAAGGGTTGGCATTGCCGCCCAACCGCGT
CGTGCTGCACCGTGGGGAAACCAGCCCTTCAACTCCACCACCTCCACCAG
CCACAGGAAAAAGGGGGTAGGGGATGCGAAAGTCCTGTCGAAATTGCTTC
GCCGCTATGCTAGTCCTGTCCTTGAGATCTTCATCCTGAAGAAGCTGTGC
CCAAGCACACGTCCTGACGTCTCTTCTCTTTTTCTGAAGCGCACGCGGAA
ACAGAGAAAGAGGGGAGTCATCAAGGCGTGTGCTTGGGCACAGGTTCGGG
GCGCCACAAAGCGGTGGCGCTAGGTATAAATTTCCCCGAAGTGTAGACCT
GGGTCCACGACATCGTGACATTGTGTGACGCAAAGAAGTTCTACGCTCAT
ACCATATCCGTTTGGCATGGGGGTAACCGTATATTTCGCGTCACCAAGGT
GGGAACTTCACTTCGCTGGTAGGCTTAATTGTGTAACGGCAGGTATGTGA
AGCTGCGAAACATATAACATTTCAACTTTTCTGTTTTTTTTGGGGGGGTG
GGTGCGGGTGGATTCCGGTGTCCGGTCCACCATCTCCCCTCAGGTACTGG
GAAGGAACTGCCGCTTCCTGCAGGGCCCGGACACGGACCCCAAGGCGGTC
GAAAAGATTCGAAAGGTGAGGCGTCGCGTCGTGAGCCGGGTCGTGCTAAT
AGTGGAGTTTTGAAATTAATATCACCCGTCTCCGCTTCCCTCGGCGCGCT
TACGCTCACCACACCTCGCCGTATCGGCTCAAATTAGCGCTCGTATAGCC
TCGCATCTGTACCACGGCAGTATACGTCACCGTTTCGCACCAACAAGAGG
GGATGTGGTGTGTGTTTCTTCCTCTATTTCTTGATACTCGCGCGCCTCGA
TATGATCGCTATATCTTTGCTCCGAAAAAATATATATATATATATATATA
AATATACATGTATACGGCCGTTTCGCGCGTCCCGTCCCCTTTTAAAATTG
AATATGTCCTACCTACTGTCAACGTGGGCCACGGATGTCATCTCCTGATT
ACAATATATCCTGTGGACGGGGCCCGCCTATCGAAACGCTTTTTGTTGTT
CTCTCACTCTTCAGGCGATCGAGAATGGCACGGTGAGCCTCTTGGTTAGT
GCTTCTCGTGTGTGTACTCTCTAGTGTGTACATTTTCGCTTGTGTGTGTG
CGCAAATGCGTACATATACGTGTGTATGGTGTGTGTATTTATTAAATTGC
ACGTAACCGCGCAATCCGGCTCTGTCATGCTAGCTCTTCTAGGCTACTCT
CGCATTAACCCTCCCAATGGGGGATTCAATCATATTTGCTACAAATTGTA
TGTGTGTTTGAATATGCTTGTCGTTAACTTGGGAATGTTCTCCGAGGCCG
ATTCGACCACGGCAACGCTTGAGAACACTTGCTTCCTTCGCTGGCTCTCG
TCTCATGTCGGTCCGAATCCCATAAAAAGAAACACGTGCCACGCCCCTGA
TGAAATCCTCTCGTATCGTCGTGGCACCCTTCCTCCTCCTCCTCCTCCTC
TCTGTCCCCCATCCCCTGTTCCCACCCCCTCTTTCCGTGTGTAAAATCCG
ACCGAGAGCAGGACGCGTCCGTTTGTCTCCGCAACTACCGTGTGGACGGG
GCGATGTTCTGGAACCAGTTCTTCATCGCGGCCTTGCGAGACTCGGAGGG
CACCGTGATCAACTACGTGGGCGTGCAGTGCAGGGTGGACGAAGATTTCG
TGCGCGCCATGCAGAAGAGGGAAGGCGAGGAGGAAGAAGACGAGGAAGAA
GAAGATGATGACGAAGATGACAGAAGCGACACGGAACATAAGGATGCGCC
AAGAGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig6700:2486..8895+

>mRNA_H-elongata_contig6700.14305.1 ID=mRNA_H-elongata_contig6700.14305.1|Name=mRNA_H-elongata_contig6700.14305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig6700:2486..8895+ (Himanthalia elongata Himel1 dioecious)
ATGAAATCGGCTGCATCGACATCTGGGCTTGACGAGGAGGACGATGAAGA
GAGGGTAGGCAAACGCGGGGTGGGGGGGAAGAGGCCTCGGCAAGGGGGGC
GAAACATGACGGAACAACAGCGGCTCGATAGAAGATGAAATCGGCTGCAT
CGACATCTGGGCTTGACGAGGAGGACGATGAAGAGAGGGTAGGCAAACGC
GGGGTGGGGGGGAAGAGGCCTCGGCAAGGGGGGCGAAACATGACGGAACA
ACAGCGGCTCGATAGAAGGGAGCGCAATCGAGAGCACGCGAAGCGTTCGC
GTGTGCGGAAGAAGTTCCTGTTGGAGTCACTACAGAAGAGCGTCACGGCG
CTGCAAGAGGAGAATGAAAAGCTGAGGGGCGCAATACGGGCCAACCTTGG
GGCGGACGAGGCGAAGGATCTGCTCTCGCAGACGGAGACGTCGAGCCTGA
TCAGCAGTTCCCCGGGAGACGCCACGAAGGGAGCGCAATCGAGAGCACGC
GAAGCGTTCGCGTGTGCGGAAGAAGTTCCTGTTGGAGTCACTACAGAAGA
GCGTCACGGCGCTGCAAGAGGAGAATGAAAAGCTGAGGGGCGCAATACGG
GCCAACCTTGGGGCGGACGAGGCGAAGGATCTGCTCTCGCAGACGGAGAC
GTCGAGCCTGATCAGCAGTTCCCCGGGAGACGCCACGAAGGTCCTGGACG
ATCCCGATTACTCCCTGGTGAAGGCGTTGCAGACAGCACAGCAAAACTTC
GTCATCACCGACCCGACGTTGCCGGACAACCCCATCGTTTTCGCCAGCCA
GGGCTTCCTTGAGCTCACCGGTTACACCCTCGACCAGGTCCTGGACGATC
CCGATTACTCCCTGGTGAAGGCGTTGCAGACAGCACAGCAAAACTTCGTC
ATCACCGACCCGACGTTGCCGGACAACCCCATCGTTTTCGCCAGCCAGGG
CTTCCTTGAGCTCACCGGTTACACCCTCGACCAGGTACTGGGAAGGAACT
GCCGCTTCCTGCAGGGCCCGGACACGGACCCCAAGGCGGTCGAAAAGATT
CGAAAGGTGAGGCGTCGCGTCGTACTGGGAAGGAACTGCCGCTTCCTGCA
GGGCCCGGACACGGACCCCAAGGCGGTCGAAAAGATTCGAAAGGTGAGGC
GTCGCGTCCAGGACGCGTCCGTTTGTCTCCGCAACTACCGTGTGGACGGG
GCGATGTTCTGGAACCAGTTCTTCATCGCGGCCTTGCGAGACTCGGAGGG
CACCGTGATCAACTACGTGGGCGTGCAGTGCAGGGTGGACGAAGATTTCG
TGCGCGCCATGCAGAAGAGGGAAGGCGAGGAGGAAGAAGACGAGGAAGAA
GAAGATGATGACGAAGATGACAGAAGCGACACGGAACATAAGGATGCGCC
AAGAGGCTAACAGGACGCGTCCGTTTGTCTCCGCAACTACCGTGTGGACG
GGGCGATGTTCTGGAACCAGTTCTTCATCGCGGCCTTGCGAGACTCGGAG
GGCACCGTGATCAACTACGTGGGCGTGCAGTGCAGGGTGGACGAAGATTT
CGTGCGCGCCATGCAGAAGAGGGAAGGCGAGGAGGAAGAAGACGAGGAAG
AAGAAGATGATGACGAAGATGACAGAAGCGACACGGAACATAAGGATGCG
CCAAGAGGCTAA
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