prot_H-elongata_contig6700.14304.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6700.14304.1
Unique Nameprot_H-elongata_contig6700.14304.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length177
Homology
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BLAST of mRNA_H-elongata_contig6700.14304.1 vs. uniprot
Match: A0A6H5JQP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.180e-6
Identity = 59/149 (39.60%), Postives = 71/149 (47.65%), Query Frame = 0 
Query:    1 MNSFPPAPIFGVAGGGXXXXXXXXXGSLGG-KFINIDDIFRECFMEADTNDLLDLDRPGAGESLAGGLGGD--GG-------------------SVSANSGAGGIGNGASGSISVGAFHEAGGATPAMIPTQTQQQFDASQLNGISMFM 127
            +NS PPAPIFGV  GG         G +G  KFINID+IF +CFM+ D+ DLL L   GA    A G G D  GG                   S++ N  A      ASG +    F   G  TPAM+  Q QQ    S L G+SMF+
Sbjct:    7 VNSMPPAPIFGVTPGGDGN------GGMGNSKFINIDEIFADCFMDGDS-DLLGLGGTGAQGEAAEGQGADSMGGXXXXXXXXXXXXXXXXXELSLNLNPNAA---ISASGGLHAATF---GLGTPAMMQPQQQQALTPSPLEGMSMFL 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6700.14304.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQP5_9PHAE1.180e-639.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6700contigH-elongata_contig6700:1820..2350 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6700.14304.1mRNA_H-elongata_contig6700.14304.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6700 1137..2350 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6700.14304.1 ID=prot_H-elongata_contig6700.14304.1|Name=mRNA_H-elongata_contig6700.14304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MNSFPPAPIFGVAGGGGGGDGSGNGGSLGGKFINIDDIFRECFMEADTND
LLDLDRPGAGESLAGGLGGDGGSVSANSGAGGIGNGASGSISVGAFHEAG
GATPAMIPTQTQQQFDASQLNGISMFMTEGKIEGGTVPVGTGTSQAVLAG
QQGIGVGIGADLGGGGALATAGSLELP
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