mRNA_H-elongata_contig6700.14304.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6700.14304.1
Unique NamemRNA_H-elongata_contig6700.14304.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6700.14304.1 vs. uniprot
Match: A0A6H5JQP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.570e-8
Identity = 62/154 (40.26%), Postives = 74/154 (48.05%), Query Frame = 2 
Query:  335 DQATRMNSFPPAPIFGVAGGGXXXXXXXXXGSLGG-KFINIDDIFRECFMEADTNDLLDLDRPGAGESLAGGLGGD--GG-------------------SVSANSGAGGIGNGASGSISVGAFHEAGGATPAMIPTQTQQQFDASQLNGISMFM 730
            DQ T +NS PPAPIFGV  GG         G +G  KFINID+IF +CFM+ D+ DLL L   GA    A G G D  GG                   S++ N  A      ASG +    F   G  TPAM+  Q QQ    S L G+SMF+
Sbjct:    2 DQTTSVNSMPPAPIFGVTPGGDGN------GGMGNSKFINIDEIFADCFMDGDS-DLLGLGGTGAQGEAAEGQGADSMGGXXXXXXXXXXXXXXXXXELSLNLNPNAA---ISASGGLHAATF---GLGTPAMMQPQQQQALTPSPLEGMSMFL 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6700.14304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQP5_9PHAE3.570e-840.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6700contigH-elongata_contig6700:1137..2350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size882
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6700.14304.1prot_H-elongata_contig6700.14304.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6700 1820..2350 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.053744-UTR-H-elongata_contig6700:1136..11991622931060.053744-UTR-H-elongata_contig6700:1136..1199Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6700 1137..1199 +
1691679681.3805165-UTR-H-elongata_contig6700:1136..11991691679681.3805165-UTR-H-elongata_contig6700:1136..1199Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6700 1137..1199 +
1622931060.0897596-UTR-H-elongata_contig6700:1533..18191622931060.0897596-UTR-H-elongata_contig6700:1533..1819Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6700 1534..1819 +
1691679681.3935962-UTR-H-elongata_contig6700:1533..18191691679681.3935962-UTR-H-elongata_contig6700:1533..1819Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6700 1534..1819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.106967-CDS-H-elongata_contig6700:1819..23501622931060.106967-CDS-H-elongata_contig6700:1819..2350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 1820..2350 +
1691679681.4073362-CDS-H-elongata_contig6700:1819..23501691679681.4073362-CDS-H-elongata_contig6700:1819..2350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6700 1820..2350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6700.14304.1

>prot_H-elongata_contig6700.14304.1 ID=prot_H-elongata_contig6700.14304.1|Name=mRNA_H-elongata_contig6700.14304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MNSFPPAPIFGVAGGGGGGDGSGNGGSLGGKFINIDDIFRECFMEADTND
LLDLDRPGAGESLAGGLGGDGGSVSANSGAGGIGNGASGSISVGAFHEAG
GATPAMIPTQTQQQFDASQLNGISMFMTEGKIEGGTVPVGTGTSQAVLAG
QQGIGVGIGADLGGGGALATAGSLELP
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mRNA from alignment at H-elongata_contig6700:1137..2350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6700.14304.1 ID=mRNA_H-elongata_contig6700.14304.1|Name=mRNA_H-elongata_contig6700.14304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1214bp|location=Sequence derived from alignment at H-elongata_contig6700:1137..2350+ (Himanthalia elongata Himel1 dioecious)
TNNNNNNNNNNAGCTGAACAGGGAAAATAATTTTCCCCTGTCCCCGTTCG
CGCCTGAAAAATTGTAAGAACCATCGCACGCCGCGTGCACACCAGAGCAC
GGCATCCAACTGAGGCTTTCATCAAACGGGGGTAGGGGGGATCGGTATTG
AAGGAAATTGCCTTTTGGTATATATTCGTATTGACAAGCTTGGCCACGCC
GAACCGCGCTAGCACGTGACGTCAAACCAAACCCGTGTACTGTAGCATAC
CTAGTACACGCTTGGTTGGTCGATCGTGTGTCATTCTCCTTACATGAAGT
AAATTTTCCACACAGTTTTCATATGATAATTTGGATGTTTCGCGTCGAAA
TGATTTAGCCTCCGCTGCTTTGATGTCCCGCGCACCCCTGATCCCAGGCG
TCATCAGAGAGGGGCTTCTGCCTCGACTGCGAGGTGCGTTCGCGGGGGAC
AGCAGATATTTGGGCCGAGCCTGGGGAGACGGGGGATCAATCAGTCACAT
ACGCTACTAAAGCCACCGTCCAGGTTTTATACCGCGGCTGAGATCAGCAG
AGTAGGGGCCTCGAGGCAGAAGACCCCGCTTCAGCGTTGAGCCTCGAGAC
AACCAACGTGTACAGACGAGAGCATAATACTCGCTCTATCTCACTCGGCT
GGCTCGAGGATTTTTTTCGACCAAGCGACGAGGATGAATTCCTTCCCCCC
AGCACCGATCTTTGGGGTAGCCGGTGGCGGTGGGGGTGGGGACGGAAGTG
GGAACGGCGGGTCGCTGGGTGGCAAGTTCATCAACATCGATGATATCTTC
CGTGAATGCTTCATGGAGGCGGATACAAATGACTTGCTGGACTTGGATCG
ACCGGGGGCGGGAGAATCTTTGGCGGGAGGCTTAGGGGGAGATGGTGGTT
CCGTATCGGCAAACTCCGGTGCTGGAGGTATTGGTAACGGGGCAAGCGGC
AGCATCAGCGTTGGAGCATTCCACGAGGCCGGGGGTGCTACGCCTGCGAT
GATTCCAACTCAAACGCAGCAGCAGTTCGATGCGAGTCAACTCAATGGTA
TCTCGATGTTTATGACAGAGGGGAAGATAGAAGGGGGGACCGTACCCGTG
GGCACGGGAACTTCTCAGGCGGTATTGGCGGGGCAGCAGGGCATAGGAGT
AGGAATAGGAGCAGACTTGGGAGGAGGGGGCGCGCTCGCGACTGCGGGAA
GTTTGGAGTTGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig6700:1137..2350+

>mRNA_H-elongata_contig6700.14304.1 ID=mRNA_H-elongata_contig6700.14304.1|Name=mRNA_H-elongata_contig6700.14304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig6700:1137..2350+ (Himanthalia elongata Himel1 dioecious)
ATGAATTCCTTCCCCCCAGCACCGATCTTTGGGGTAGCCGGTGGCGGTGG
GGGTGGGGACGGAAGTGGGAACGGCGGGTCGCTGGGTGGCAAGTTCATCA
ACATCGATGATATCTTCCGTGAATGCTTCATGGAGGCGGATACAAATGAC
TTGCTGGACTTGGATCGACCGGGGGCGGGAGAATCTTTGGCGGGAGGCTT
AGGGGGAGATGGTGGTTCCGTATCGGCAAACTCCGGTGCTGGAGGTATTG
GTAACGGGGCAAGCGGCAGCATCAGCGTTGGAGCATTCCACGAGGCCGGG
GGTGCTACGCCTGCGATGATTCCAACTCAAACGCAGCAGCAGTTCGATGC
GAGTCAACTCAATGGTATCTCGATGTTTATGACAGAGGGGAAGATAGAAG
GGGGGACCGTACCCGTGGGCACGGGAACTTCTCAGGCGGTATTGGCGGGG
CAGCAGGGCATAGGAGTAGGAATAGGAGCAGACTTGGGAGGAGGGGGCGC
GCTCGCGACTGCGGGAAGTTTGGAGTTGCCGATGAATTCCTTCCCCCCAG
CACCGATCTTTGGGGTAGCCGGTGGCGGTGGGGGTGGGGACGGAAGTGGG
AACGGCGGGTCGCTGGGTGGCAAGTTCATCAACATCGATGATATCTTCCG
TGAATGCTTCATGGAGGCGGATACAAATGACTTGCTGGACTTGGATCGAC
CGGGGGCGGGAGAATCTTTGGCGGGAGGCTTAGGGGGAGATGGTGGTTCC
GTATCGGCAAACTCCGGTGCTGGAGGTATTGGTAACGGGGCAAGCGGCAG
CATCAGCGTTGGAGCATTCCACGAGGCCGGGGGTGCTACGCCTGCGATGA
TTCCAACTCAAACGCAGCAGCAGTTCGATGCGAGTCAACTCAATGGTATC
TCGATGTTTATGACAGAGGGGAAGATAGAAGGGGGGACCGTACCCGTGGG
CACGGGAACTTCTCAGGCGGTATTGGCGGGGCAGCAGGGCATAGGAGTAG
GAATAGGAGCAGACTTGGGAGGAGGGGGCGCGCTCGCGACTGCGGGAAGT
TTGGAGTTGCCG
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