mRNA_H-elongata_contig67.14302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67.14302.1
Unique NamemRNA_H-elongata_contig67.14302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67.14302.1 vs. uniprot
Match: A0A6H5KY18_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY18_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.040e-24
Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 NNDGFLSFGELKAALASLQMGVTPGEMRALFEHLETEL-VLCDGEGSGFTSGVISCQAFLDAVRAPLSGERLGIVRLAFRRMDLRNEGKVSPETVAQR 291
            N DGFLSFG+LKAAL+S + G+T  E+RALF HLETE      G G G  SGV+  QA LDA R PLSGERLG+V LAF +MD    G VSP TV QR
Sbjct: 1163 NKDGFLSFGDLKAALSSSRAGLTVPEVRALFTHLETEEGPRRAGGGGGDGSGVVPWQALLDATRPPLSGERLGLVLLAFGKMDKEGRGHVSPGTVTQR 1260
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BLAST of mRNA_H-elongata_contig67.14302.1 vs. uniprot
Match: D8LQ60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ60_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.340e-13
Identity = 46/97 (47.42%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 NNDGFLSFGELKAALASLQMGVTPGEMRALFEHLETELVLCDGEGSGFTSGVISCQAFLDAVRAPLSGERLGIVRLAFRRMDLRNEGKVSPETVAQR 291
            N DGFLSFG+LKAAL+S + G+T  E                              A LDA R PLSGERLG+VRLAF +MD    G VSPETV QR
Sbjct: 1190 NKDGFLSFGDLKAALSSSRAGLTIPE------------------------------ALLDATRPPLSGERLGLVRLAFGKMDKEGRGHVSPETVTQR 1256
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67.14302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY18_9PHAE6.040e-2461.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LQ60_ECTSI5.340e-1347.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67contigH-elongata_contig67:3653..3946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue7e-12
Seed eggNOG ortholog2880.D8LQ60
KEGG koko:K03234
KEGG Pathwayko04152,ko04921,map04152,map04921
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.8850777-CDS-H-elongata_contig67:3652..39461622931059.8850777-CDS-H-elongata_contig67:3652..3946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67 3653..3946 +
1691679681.311459-CDS-H-elongata_contig67:3652..39461691679681.311459-CDS-H-elongata_contig67:3652..3946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67 3653..3946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67.14302.1prot_H-elongata_contig67.14302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67 3653..3946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67.14302.1

>prot_H-elongata_contig67.14302.1 ID=prot_H-elongata_contig67.14302.1|Name=mRNA_H-elongata_contig67.14302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
NNDGFLSFGELKAALASLQMGVTPGEMRALFEHLETELVLCDGEGSGFTS
GVISCQAFLDAVRAPLSGERLGIVRLAFRRMDLRNEGKVSPETVAQR*
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mRNA from alignment at H-elongata_contig67:3653..3946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67.14302.1 ID=mRNA_H-elongata_contig67.14302.1|Name=mRNA_H-elongata_contig67.14302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig67:3653..3946+ (Himanthalia elongata Himel1 dioecious)
AATAACGATGGGTTTCTGTCTTTCGGGGAACTCAAGGCGGCATTGGCTTC
TCTACAGATGGGGGTGACTCCAGGCGAGATGCGAGCCCTTTTCGAGCACC
TTGAGACTGAACTCGTCCTTTGCGATGGAGAAGGATCTGGATTCACCAGT
GGTGTCATCTCATGCCAAGCCTTCCTAGACGCGGTCAGGGCACCCCTGAG
CGGAGAACGTCTGGGGATTGTTCGATTAGCTTTCAGAAGGATGGACCTCA
GAAACGAAGGGAAAGTTTCACCGGAAACTGTAGCGCAAAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig67:3653..3946+

>mRNA_H-elongata_contig67.14302.1 ID=mRNA_H-elongata_contig67.14302.1|Name=mRNA_H-elongata_contig67.14302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig67:3653..3946+ (Himanthalia elongata Himel1 dioecious)
AATAACGATGGGTTTCTGTCTTTCGGGGAACTCAAGGCGGCATTGGCTTC
TCTACAGATGGGGGTGACTCCAGGCGAGATGCGAGCCCTTTTCGAGCACC
TTGAGACTGAACTCGTCCTTTGCGATGGAGAAGGATCTGGATTCACCAGT
GGTGTCATCTCATGCCAAGCCTTCCTAGACGCGGTCAGGGCACCCCTGAG
CGGAGAACGTCTGGGGATTGTTCGATTAGCTTTCAGAAGGATGGACCTCA
GAAACGAAGGGAAAGTTTCACCGGAAACTGTAGCGCAAAGGTAGAATAAC
GATGGGTTTCTGTCTTTCGGGGAACTCAAGGCGGCATTGGCTTCTCTACA
GATGGGGGTGACTCCAGGCGAGATGCGAGCCCTTTTCGAGCACCTTGAGA
CTGAACTCGTCCTTTGCGATGGAGAAGGATCTGGATTCACCAGTGGTGTC
ATCTCATGCCAAGCCTTCCTAGACGCGGTCAGGGCACCCCTGAGCGGAGA
ACGTCTGGGGATTGTTCGATTAGCTTTCAGAAGGATGGACCTCAGAAACG
AAGGGAAAGTTTCACCGGAAACTGTAGCGCAAAGGTAG
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