mRNA_H-elongata_contig66994.14301.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI) HSP 1 Score: 270 bits (689), Expect = 6.550e-87 Identity = 149/270 (55.19%), Postives = 173/270 (64.07%), Query Frame = 1
Query: 1 DEQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSES-SSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGG-----IEAWPEGGIPD-RWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGLALGGEISMRYPLLYATTITGGLYVLRLEAERVAAAAILSTDVETIQRRGPLRLRCIGFVRGNIIL 789
DE+ SGS WDV+TG CT A+ PRN+VTCLK LS SS VVQ GL +T+ GY +FPL LDVS G +VLTS KGF+GAGCE KLWDLR +PVREYTGHTQDTTACVF SK+G G R G WP P R MIATASKDGT+KIYDL++G++L+DHVE ECGGYTGLA+ + P+ YA+TITGGLY LRLE E+VA A T + G LRLRC+GFVRGN IL
Sbjct: 39 DEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGGPSSSVVQXXXXXXXXXXXXXXXGLRSSMTVDGYTFFPLFLDVSSDGHQVLTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAREGGYGLSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLE-EKVATAGTSRTGLG----EGGLRLRCVGFVRGNPIL 303
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE) HSP 1 Score: 265 bits (677), Expect = 5.360e-85 Identity = 148/270 (54.81%), Postives = 174/270 (64.44%), Query Frame = 1
Query: 1 DEQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLS-ESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSV-GPKVVRGGIEAWPEGGIP-----DRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGLALGGEISMRYPLLYATTITGGLYVLRLEAERVAAAAILSTDVETIQRRGPLRLRCIGFVRGNIIL 789
DE+A SGSRDTS+R WDV+TG C A+ PRN+VTCLK LS E SS V QGGEDL+LRVWD+R+GGL P +TI GY +FP LWDLR +PVREYTGHTQDTTACVF SK+G G V G P R MIATASKDGT+KIYDL++G++L+DHVE ECGGYTGLA+ + P+ YA+TITGGLY LRLE E VA AA T+++ G LRLRC+GFVRGN IL
Sbjct: 73 DEKALYSGSRDTSIRAWDVQTGQCISSAKVPRNLVTCLKCLSGELSSSVAQGGEDLKLRVWDAREGGLRPSMTIDGYTFFP---------------------------LWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDDGSGVEENGYGVSPSPSTSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLE-EEVATAAQSQTELQ----EGGLRLRCVGFVRGNPIL 310
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: A0A835ZHR6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR6_9STRA) HSP 1 Score: 171 bits (433), Expect = 7.180e-49 Identity = 110/244 (45.08%), Postives = 134/244 (54.92%), Query Frame = 1
Query: 1 DEQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYL--SESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIK--IYDLSNGNLLIDHVEHECGGYTGLALGGEISMRYPLLYATTITGGLYVLRL---EAERVAAAAILS 711
DE SGSRDTS+RLWDV TG PRN+VTCLK + E ++VVVQGGEDL+LR+WD R P T+ G++YFPLCLDVSE G +LT SKGF+ GCE +LWD R+T V+EY GH QD TAC+ + P + A GG + TASKD TIK ++ +G LL D E L A T TGGLY L+L EA AA +LS
Sbjct: 43 DETHLWSGSRDTSVRLWDVSTGQQRGMVATPRNLVTCLKCMPGEEGTNVVVQGGEDLKLRLWDFRTPSSVPAQTLDGFVYFPLCLDVSEDGNYLLTGSKGFNSVGCEGRLWD-RRTGQVVQEYNGHAQDVTACL--------LAPAAL-----AASSGG-----AVITASKDQTIKARVWGRESGQLLSDFAEPH------------------RLCAATFTGGLYDLQLSEGEAGGETAAPVLS 249
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD) HSP 1 Score: 158 bits (399), Expect = 9.460e-43 Identity = 81/198 (40.91%), Postives = 115/198 (58.08%), Query Frame = 1
Query: 1 DEQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGL 594
DE + CSG RDT WD+ TG K +N++TC K++ +VVQG EDL L++WD R P + GY+YF LC+DVS G LTSSKGF+G GCE ++WD R+T + E+ GH QDTT+C F S GS V ++ IP + TASKDG++K++D + ++L + +E G +T +
Sbjct: 129 DETSLCSGGRDTQTIFWDLTTGRLKAKNTTSQNVITCSKWVPVEP-LVVQGSEDLTLKLWDERTNLRAPAQSFHGYVYFALCVDVSPDGNYFLTSSKGFNGVGCEVRIWD-RRTGKQLYEFNGHQQDTTSCCFLPSATGSSSNDSVTSPADSVRASAIP---IPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSI 321
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: A0A067CE75_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CE75_SAPPC) HSP 1 Score: 148 bits (373), Expect = 4.230e-39 Identity = 80/217 (36.87%), Postives = 116/217 (53.46%), Query Frame = 1
Query: 4 EQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGLALGGEISMRYPLLYATTITG 654
E SGSRDT LWDV TG +NIVTC+ ++ + ++V QGGEDL +R+WD+R +P TI+GY+YFPL +D S+ G +LTSSKGF+G GCE ++WD R +L V E H QD TAC + K+ TASKD +++I++ ++G L+ + G +TG+A S ++ T+ G
Sbjct: 136 ETHLASGSRDTGTSLWDVTTGTRVQHTTTSQNIVTCMTWVPQCETLVAQGGEDLCVRLWDARSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRTGKL-VTEMHVHLQDATACAYVRHKNA-----------------------FAVTASKDSSLRIWNSASGELVASSFDQSSGMFTGVACQSLESSDVVRVFTTSFAG 327
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: T0QNJ3_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNJ3_SAPDV) HSP 1 Score: 148 bits (373), Expect = 6.040e-39 Identity = 78/217 (35.94%), Postives = 117/217 (53.92%), Query Frame = 1
Query: 4 EQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGLALGGEISMRYPLLYATTITG 654
E SGSRDT LWDV T A +NIVTC+ ++ + +++ QGGEDL +R+WD+R +P TI+GY+YFPL +D S+ G +LTSSKGF+G GCE ++WD R +L V E GH QD +AC + K+ TASKD +++I++ ++G L+ +H G +T +A + ++ T+ G
Sbjct: 140 ESNLASGSRDTGTSLWDVTTRARVQHTTTSQNIVTCMTWVPQCETLLAQGGEDLCVRLWDTRSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRTGKL-VTEMHGHLQDASACAYMRHKNAYA-----------------------VTASKDSSLRIWNSASGELITSSFDHSSGMFTSVACRSVETSDEVTVFTTSFAG 331
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: A0A8K1CV93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV93_PYTOL) HSP 1 Score: 146 bits (368), Expect = 6.780e-38 Identity = 86/224 (38.39%), Postives = 122/224 (54.46%), Query Frame = 1
Query: 1 DEQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSK--DGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGG-YTGLALGGEISMRYPLLYATTITGGLY 663
DE + CSG RDT WD+ T K +N++TC K++ + VV+QG EDL +++WD R TPV T++GY+YFPLCLDVS G +TSSKGF+G G E ++WD R+ + ++ GH QD +AC F D S G V GIP +ASKDG+IK+++++ N L+ G +T LA G+ + A T G L+
Sbjct: 156 DETSLCSGGRDTQTMFWDLTTAKIKSKNTTAQNVITCSKWVP-TEHVVLQGSEDLSVKLWDERSALRTPVQTLRGYVYFPLCLDVSRDGLYFMTSSKGFNGVGAEVRVWD-RRVGKQLLQFEGHQQDASACCFLPRGVLDSSEGEAPVPNASN-----GIPTP---VSASKDGSIKVWNVNAENQLLCEANEPSGRMFTSLASTGDDGT----VLAATFNGDLH 365
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: A0A1V9Z8M6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8M6_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.170e-37 Identity = 86/234 (36.75%), Postives = 122/234 (52.14%), Query Frame = 1
Query: 4 EQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKG-------------FDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGLALGGEISMRYPLLYATTITGGLYV 666
E SGSRDTS+ LWDV T +NIVTC+ ++ ++V QGGEDLR+R+WDSR +PV TI+GY+YFPL LDVS+ G +LTSSKG F+G GCE ++WD R+T V E GH QD TAC + ++ V TASKD ++++++ ++G L+ +H G +T L ++ ++ TG L V
Sbjct: 141 ETQLASGSRDTSVSLWDVATTTQLQHTTTSQNIVTCMAWVPIHDTLVAQGGEDLRVRIWDSR-AWKSPVQTIEGYVYFPLSLDVSDDGNYILTSSKGTILSWICWLMPLGFNGVGCEGRVWD-RRTGKQVCEMAGHLQDATACSYIKQRNEYV-----------------------LTASKDSSLRVWNSASGALVSSTYDHALGMFTALTSLPPDDAGIVRIFTSSFTGHLAV 349
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: A0A485KVW2_9STRA (Aste57867_12386 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVW2_9STRA) HSP 1 Score: 144 bits (362), Expect = 4.630e-37 Identity = 79/198 (39.90%), Postives = 110/198 (55.56%), Query Frame = 1
Query: 4 EQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGLA 597
E SGSRDT + LWDV T +NIVTC+ ++ ++VV QGGEDLR+R+WD+R P TI+GYIYFPL + S+ G +LTSSKGF+ GCE ++WD R+T V E GH QD TAC + ++ GI TASKD +I+++D + G+LL + G +T ++
Sbjct: 168 ESTLASGSRDTGVSLWDVATSMRRQHTITSQNIVTCMAWVPRDANVVAQGGEDLRVRLWDAR-AWKAPTQTIEGYIYFPLSIACSDDGHYLLTSSKGFNAVGCEGRVWD-RRTGKQVAEMRGHAQDATACAYIPGRNHE--------GI---------------TASKDSSIRVWDTTTGDLLASTQDANAGMFTSVS 340
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Match: A0A5D6Y005_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y005_9STRA) HSP 1 Score: 148 bits (373), Expect = 8.920e-37 Identity = 95/263 (36.12%), Postives = 132/263 (50.19%), Query Frame = 1
Query: 4 EQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQGGEDLRLRVWDSRQGGLTPVLTIKGYIYFPLCLDVSEHGPEVLTSSKGFDGAGCEAKLWDLRQTRLPVREYTGHTQDTTACVFFHSKDGSVGPKVVRGGIEAWPEGGIPDRWMIATASKDGTIKIYDLSNGNLLIDHVEHECGGYTGL-ALGGEISMRYPLLYATTITGGLYVLRLEAERVAAAAILSTDVETIQRRGPLRLRCIGFVRGNIIL 789
E CSG RDT WD+ TG K +N+VTC K++ +VVQG EDL L+ WD R TP GY+YF L +DVS +LTSSKGF+G GCE ++WD R+T + E++GH QD T+C F S + IP + TASKDGT+K++D + +L + E G +TGL A+ G L A+T G ++ A + A I +++V R P LR + R +L
Sbjct: 173 ETTLCSGGRDTQTIFWDLVTGKLKAKNTTSQNVVTCSKWIP-LEPLVVQGSEDLTLKFWDERTELRTPAQIFHGYVYFALSVDVSPDTSYILTSSKGFNGVGCEVRVWD-RRTGKQLLEFSGHQQDATSCCFLPGTSDS--------------QSAIP---IPVTASKDGTVKVWDAAASRVLCEASEPTGGMFTGLCAVSGST------LLASTFHGAVHAFEFNAAQ--AIYIYASEV----RAAPSALRVVVMGRDAAVL 404 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66994.14301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66994.14301.1 >prot_H-elongata_contig66994.14301.1 ID=prot_H-elongata_contig66994.14301.1|Name=mRNA_H-elongata_contig66994.14301.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp DEQAFCSGSRDTSLRLWDVETGACTIKAREPRNIVTCLKYLSESSSVVVQback to top mRNA from alignment at H-elongata_contig66994:440..2941+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66994.14301.1 ID=mRNA_H-elongata_contig66994.14301.1|Name=mRNA_H-elongata_contig66994.14301.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2502bp|location=Sequence derived from alignment at H-elongata_contig66994:440..2941+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66994:440..2941+ >mRNA_H-elongata_contig66994.14301.1 ID=mRNA_H-elongata_contig66994.14301.1|Name=mRNA_H-elongata_contig66994.14301.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig66994:440..2941+ (Himanthalia elongata Himel1 dioecious)back to top |