mRNA_H-elongata_contig66970.14297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66970.14297.1
Unique NamemRNA_H-elongata_contig66970.14297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 7.480e-51
Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:   10 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            ++GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPII+S GEDGT+R+WHSTTYRAETTLNYGMERVWALAASPDNNK ++
Sbjct:   19 LSGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRLWHSTTYRAETTLNYGMERVWALAASPDNNKVAI 104
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.780e-39
Identity = 60/88 (68.18%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    4 HYMTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            + ++G+DD  +KIWDYQTKTCVQTLEGHT NVSAV+FH +LPII+SG EDGTVR+WHS TYR ETTLNYG+ER W+LA +  +NK ++
Sbjct:  120 YLVSGADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRVWHSGTYRLETTLNYGLERAWSLAVARSSNKVAI 207
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 4.250e-39
Identity = 62/88 (70.45%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    4 HYMTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            + ++G+DD  ++IWDYQTK+CVQ LEGH+NNVSAV FH RLP+I+S  EDGTVR+WHSTTYRAETTLNYGMER WALA++PD+NK ++
Sbjct:  204 YLISGADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRLWHSTTYRAETTLNYGMERAWALASTPDSNKLAI 291
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.000e-37
Identity = 61/88 (69.32%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    4 HYMTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            + ++G+DDRTVKIWDYQTK C+QTLEGH++NVS+V FH RLP+IIS  EDGTVR+WHSTTYR ETTLNYG+ER W +AA+ D NK ++
Sbjct:  205 YLLSGADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRLWHSTTYRPETTLNYGLERAWCIAATKDANKIAI 292
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A662WEK3_9STRA (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEK3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.880e-35
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    4 HYMTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            + ++GSDDRTVK+WDYQTK  V TLEGH NN++AVL+H RLP+IIS  EDG VR+WHSTTYRAETTLNYGMER W+LAA P  N  ++
Sbjct:    6 YLLSGSDDRTVKVWDYQTKAIVHTLEGHGNNLTAVLYHPRLPLIISACEDGAVRMWHSTTYRAETTLNYGMERSWSLAALPSANTLAI 93
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S2CH33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH33_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.770e-35
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:   16 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            G+DD+TVKIWDYQTK CVQTL+GH NNV +V+FH RLPI+ISG         H+TTYRAETTLNYGMER W+LA + D NK ++
Sbjct:    2 GADDKTVKIWDYQTKACVQTLDGHANNVCSVVFHPRLPILISGSXXXXXXXXHTTTYRAETTLNYGMERAWSLACTRDANKLAI 85
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A067C2D6_SAPPC (Coatomer_WDAD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2D6_SAPPC)

HSP 1 Score: 133 bits (335), Expect = 1.830e-34
Identity = 58/88 (65.91%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    4 HYMTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            + ++GSDD+TVK+WDYQTKT V TL+GHT+N+S VL+H RLP+IIS  EDG VR+WHSTTYRAETTLNYGMER W L+A  ++N+ ++
Sbjct:   36 YLISGSDDKTVKVWDYQTKTIVHTLDGHTHNLSDVLYHPRLPLIISACEDGAVRMWHSTTYRAETTLNYGMERAWNLSALDNSNRLAI 123
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: X6MVK1_RETFI (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MVK1_RETFI)

HSP 1 Score: 127 bits (320), Expect = 1.000e-33
Identity = 52/78 (66.67%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   34 VKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            VK+WDYQTKTCV TLEGHT N+SAV+FH +LP+II+G EDG+++IWHS+TYR ETTL+YGM+R WALA+ P +N+ ++
Sbjct:  143 VKVWDYQTKTCVATLEGHTANISAVMFHPQLPVIITGAEDGSIKIWHSSTYRLETTLHYGMQRAWALASLPTSNRIAI 220
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 131 bits (330), Expect = 1.080e-33
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    4 HYMTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            + ++G+DDR VKIWDYQ KTCVQTLEGHT N+++V FH  LPII+SG EDGTVRIWHS TYR E++LNYG+ERVW +A    +N  ++
Sbjct:  206 YLISGADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRIWHSGTYRLESSLNYGLERVWTIACLRGSNNVAI 293
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 127 bits (319), Expect = 1.210e-33
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    4 HYMTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 267
            + ++G+DDR VKIWDYQ KTCVQTLEGH  N++AV FH  LPII++G EDGTVRIWH+ TYR E TLNYG+ERVW +     +N  ++
Sbjct:   74 YLISGADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRIWHANTYRLENTLNYGLERVWTICCLQGSNNMAL 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI7.480e-5189.53Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3PEI6_9STRA1.780e-3968.18Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S1Y0J4_9STRA4.250e-3970.45Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S3HJI1_9STRA1.000e-3769.32Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A662WEK3_9STRA1.880e-3569.32Coatomer_WDAD domain-containing protein (Fragment)... [more]
A0A7S2CH33_9STRA4.770e-3565.48Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A067C2D6_SAPPC1.830e-3465.91Coatomer_WDAD domain-containing protein n=1 Tax=Sa... [more]
X6MVK1_RETFI1.000e-3366.67Coatomer_WDAD domain-containing protein (Fragment)... [more]
UPI0008F9C4D71.080e-3363.64coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A293LKK5_ORNER1.210e-3361.36Vesicle coat complex COPI, beta' subunit (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66970contigH-elongata_contig66970:2173..3191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue8.2e-41
Seed eggNOG ortholog2880.D8LNJ0
KEGG koko:K17302
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVesicle coat complex COPI, beta sub-unit
Ec32 orthologEc-00_006040.1
Exons2
Model size267
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66970.14297.1prot_H-elongata_contig66970.14297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66970 2182..3191 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.3596547-UTR-H-elongata_contig66970:2172..21811622931059.3596547-UTR-H-elongata_contig66970:2172..2181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66970 2173..2181 +
1691679681.0680943-UTR-H-elongata_contig66970:2172..21811691679681.0680943-UTR-H-elongata_contig66970:2172..2181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66970 2173..2181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.3762221-CDS-H-elongata_contig66970:2181..23421622931059.3762221-CDS-H-elongata_contig66970:2181..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66970 2182..2342 +
1691679681.0798428-CDS-H-elongata_contig66970:2181..23421691679681.0798428-CDS-H-elongata_contig66970:2181..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66970 2182..2342 +
1622931059.3910081-CDS-H-elongata_contig66970:3094..31911622931059.3910081-CDS-H-elongata_contig66970:3094..3191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66970 3095..3191 +
1691679681.0892303-CDS-H-elongata_contig66970:3094..31911691679681.0892303-CDS-H-elongata_contig66970:3094..3191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66970 3095..3191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66970.14297.1

>prot_H-elongata_contig66970.14297.1 ID=prot_H-elongata_contig66970.14297.1|Name=mRNA_H-elongata_contig66970.14297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGT
VRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV
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mRNA from alignment at H-elongata_contig66970:2173..3191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66970.14297.1 ID=mRNA_H-elongata_contig66970.14297.1|Name=mRNA_H-elongata_contig66970.14297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1019bp|location=Sequence derived from alignment at H-elongata_contig66970:2173..3191+ (Himanthalia elongata Himel1 dioecious)
TTACATTATATGACAGGATCTGATGACCGGACGGTCAAGATTTGGGACTA
CCAGACCAAGACATGCGTGCAGACTCTTGAAGGGCACACCAATAACGTGT
CGGCCGTGCTATTCCACAAGCGCCTCCCCATCATCATCTCCGGTGGCGAG
GACGGGACCGTTCGTATCTGGTGAGAACGCCACAGCACGTGGAAACCCTC
TGTTGAACGGGGAGGAATGGAGAGGGGAGGGGGAAGCGAACGCGTGCGCT
TGGCGTGCGTACAGAGCACCCATCTATTAATAGTAAATATATTATTATTT
TTTGTGTTTGCTGTTAATAATTATTTTTCTTAATGTGAGTAATTATGTGA
GATTTTGTTTTCGTTTCGTTTCGAAATAGGCAGGAAAAGAGAAAAGCGTA
CCGTAAAGCAAAACGAACGTTGTAACATCCACAAGTCGCACCGCGATAAT
GATAACAATAATAGTAATAATAACAATAATAGTGATAATAACAATAATAG
TAATAATAACAATAATAGTGATAATGGATGTTCGGAGGGTTGGAATGAGT
TCAAGTTTTTTTAATAATGATGATGATAATAATAATAATGATTATGATTA
TGATAATAGTAATAATAATAGCAACAATAATAATAATAATATTAGTAAAG
AGATGTAGAAGTTGATATTAATAGGTGAGATAGATCCCTAAGGGTATTAT
GGTCTCAGGCGGTACTGTACTGTACTGTACTATACTGAAGTAGAGTATAT
TGTGGGTAGTAGGTAAAACCTAGCAAACGTTGAAAAGCTTACATCCCATT
GGCCATACGTGTGGAAAGGACATATATATATATATATATATTATATATAG
ACATATATATATATGTTTGTCATAGTCTCTCTCTCTCTCTCACTTAATCA
CGGCATGTTATACACATATCAGGCACTCCACGACCTACCGTGCGGAGACG
ACTCTCAACTACGGCATGGAGCGGGTCTGGGCCCTCGCGGCGTCCCCCGA
TAACAACAAGGCAAGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig66970:2173..3191+

>mRNA_H-elongata_contig66970.14297.1 ID=mRNA_H-elongata_contig66970.14297.1|Name=mRNA_H-elongata_contig66970.14297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig66970:2173..3191+ (Himanthalia elongata Himel1 dioecious)
ATGACAGGATCTGATGACCGGACGGTCAAGATTTGGGACTACCAGACCAA
GACATGCGTGCAGACTCTTGAAGGGCACACCAATAACGTGTCGGCCGTGC
TATTCCACAAGCGCCTCCCCATCATCATCTCCGGTGGCGAGGACGGGACC
GTTCGTATCTGATGACAGGATCTGATGACCGGACGGTCAAGATTTGGGAC
TACCAGACCAAGACATGCGTGCAGACTCTTGAAGGGCACACCAATAACGT
GTCGGCCGTGCTATTCCACAAGCGCCTCCCCATCATCATCTCCGGTGGCG
AGGACGGGACCGTTCGTATCTGGCACTCCACGACCTACCGTGCGGAGACG
ACTCTCAACTACGGCATGGAGCGGGTCTGGGCCCTCGCGGCGTCCCCCGA
TAACAACAAGGCAAGCGTCGCACTCCACGACCTACCGTGCGGAGACGACT
CTCAACTACGGCATGGAGCGGGTCTGGGCCCTCGCGGCGTCCCCCGATAA
CAACAAGGCAAGCGTC
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