prot_H-elongata_contig66970.14297.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66970.14297.1
Unique Nameprot_H-elongata_contig66970.14297.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length86
Homology
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 9.310e-51
Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPII+S GEDGT+R+WHSTTYRAETTLNYGMERVWALAASPDNNK ++
Sbjct:   19 LSGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRLWHSTTYRAETTLNYGMERVWALAASPDNNKVAI 104
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.140e-39
Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++G+DD  +KIWDYQTKTCVQTLEGHT NVSAV+FH +LPII+SG EDGTVR+WHS TYR ETTLNYG+ER W+LA +  +NK ++
Sbjct:  122 VSGADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRVWHSGTYRLETTLNYGLERAWSLAVARSSNKVAI 207
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 146 bits (368), Expect = 6.990e-39
Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++G+DD  ++IWDYQTK+CVQ LEGH+NNVSAV FH RLP+I+S  EDGTVR+WHSTTYRAETTLNYGMER WALA++PD+NK ++
Sbjct:  206 ISGADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRLWHSTTYRAETTLNYGMERAWALASTPDSNKLAI 291
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.680e-37
Identity = 61/86 (70.93%), Postives = 75/86 (87.21%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++G+DDRTVKIWDYQTK C+QTLEGH++NVS+V FH RLP+IIS  EDGTVR+WHSTTYR ETTLNYG+ER W +AA+ D NK ++
Sbjct:  207 LSGADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRLWHSTTYRPETTLNYGLERAWCIAATKDANKIAI 292
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A662WEK3_9STRA (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEK3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.100e-35
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++GSDDRTVK+WDYQTK  V TLEGH NN++AVL+H RLP+IIS  EDG VR+WHSTTYRAETTLNYGMER W+LAA P  N  ++
Sbjct:    8 LSGSDDRTVKVWDYQTKAIVHTLEGHGNNLTAVLYHPRLPLIISACEDGAVRMWHSTTYRAETTLNYGMERSWSLAALPSANTLAI 93
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A7S2CH33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH33_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.990e-35
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0 
Query:    3 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            G+DD+TVKIWDYQTK CVQTL+GH NNV +V+FH RLPI+ISG         H+TTYRAETTLNYGMER W+LA + D NK ++
Sbjct:    2 GADDKTVKIWDYQTKACVQTLDGHANNVCSVVFHPRLPILISGSXXXXXXXXHTTTYRAETTLNYGMERAWSLACTRDANKLAI 85
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A067C2D6_SAPPC (Coatomer_WDAD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2D6_SAPPC)

HSP 1 Score: 132 bits (333), Expect = 3.040e-34
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++GSDD+TVK+WDYQTKT V TL+GHT+N+S VL+H RLP+IIS  EDG VR+WHSTTYRAETTLNYGMER W L+A  ++N+ ++
Sbjct:   38 ISGSDDKTVKVWDYQTKTIVHTLDGHTHNLSDVLYHPRLPLIISACEDGAVRMWHSTTYRAETTLNYGMERAWNLSALDNSNRLAI 123
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BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: X6MVK1_RETFI (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MVK1_RETFI)

HSP 1 Score: 127 bits (319), Expect = 1.240e-33
Identity = 52/78 (66.67%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    9 VKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            VK+WDYQTKTCV TLEGHT N+SAV+FH +LP+II+G EDG+++IWHS+TYR ETTL+YGM+R WALA+ P +N+ ++
Sbjct:  143 VKVWDYQTKTCVATLEGHTANISAVMFHPQLPVIITGAEDGSIKIWHSSTYRLETTLHYGMQRAWALASLPTSNRIAI 220
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 130 bits (328), Expect = 1.770e-33
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++G+DDR VKIWDYQ KTCVQTLEGHT N+++V FH  LPII+SG EDGTVRIWHS TYR E++LNYG+ERVW +A    +N  ++
Sbjct:  208 ISGADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRIWHSGTYRLESSLNYGLERVWTIACLRGSNNVAI 293
[Close]
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 126 bits (317), Expect = 2.120e-33
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0 
Query:    1 MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGTVRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV 86
            ++G+DDR VKIWDYQ KTCVQTLEGH  N++AV FH  LPII++G EDGTVRIWH+ TYR E TLNYG+ERVW +     +N  ++
Sbjct:   76 ISGADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRIWHANTYRLENTLNYGLERVWTICCLQGSNNMAL 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66970.14297.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI9.310e-5189.53Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3PEI6_9STRA3.140e-3969.77Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S1Y0J4_9STRA6.990e-3972.09Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S3HJI1_9STRA1.680e-3770.93Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A662WEK3_9STRA3.100e-3570.93Coatomer_WDAD domain-containing protein (Fragment)... [more]
A0A7S2CH33_9STRA5.990e-3565.48Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A067C2D6_SAPPC3.040e-3467.44Coatomer_WDAD domain-containing protein n=1 Tax=Sa... [more]
X6MVK1_RETFI1.240e-3366.67Coatomer_WDAD domain-containing protein (Fragment)... [more]
UPI0008F9C4D71.770e-3365.12coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A293LKK5_ORNER2.120e-3362.79Vesicle coat complex COPI, beta' subunit (Fragment... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 16..55
e-value: 9.1E-10
score: 48.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 18..54
e-value: 1.5E-8
score: 35.1
coord: 2..13
e-value: 0.026
score: 15.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 23..64
score: 14.786
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..22
score: 11.845
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..86
e-value: 1.9E-33
score: 117.6
NoneNo IPR availablePANTHERPTHR19876COATOMERcoord: 2..78
NoneNo IPR availablePANTHERPTHR19876:SF2COATOMER SUBUNIT BETA'coord: 2..78
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..86
score: 22.359
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66970contigH-elongata_contig66970:2182..3191 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66970.14297.1mRNA_H-elongata_contig66970.14297.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66970 2173..3191 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66970.14297.1 ID=prot_H-elongata_contig66970.14297.1|Name=mRNA_H-elongata_contig66970.14297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MTGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIISGGEDGT
VRIWHSTTYRAETTLNYGMERVWALAASPDNNKASV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf