mRNA_H-elongata_contig6697.14295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6697.14295.1
Unique NamemRNA_H-elongata_contig6697.14295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.020e-20
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D   IR+RW R+F  LLN KS  +D +   +  + P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  D+ +LRE H +   +W+ G VPQQWKDA
Sbjct:   89 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDA 198
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 7.160e-20
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D   IR+RW R+F  LLN KS  +D +   +  + P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  D+ +LRE H +   +W+ G VPQQWKD 
Sbjct:   24 VLQDPAFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHSIVVDVWQTGDVPQQWKDT 133
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5K0F8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.900e-20
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D   IR+RW R+F  LLN KS  +D +   +  + P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  D+ +LRE H +   +W+ G VPQQWKDA
Sbjct:   79 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDA 188
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.230e-20
Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D    R+RW R+F  LLN KS  +D +   R  Q P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  DR +LRE H +   +W+ G VPQQWKDA
Sbjct:  320 VLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGLLREFHAIVVDVWQTGDVPQQWKDA 429
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-19
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D    R+RW R+F  LLN KS  +D +   R  Q P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  DR  LRE H +   +W+ G VPQQWKDA
Sbjct:   22 VLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDA 131
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.430e-19
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D    R+RW R+F  LLN KS  +D +   R  Q P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  DR  LRE H +   +W+ G VPQQWKDA
Sbjct:   22 VLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDA 131
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5JP02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP02_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.440e-19
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D   IR+RW R+F  LLN KS  +D +   +  + P    L    +  EI  A++A++N KAVGPD L AEL+KL L  D+ +LRE H +   +W+ G VPQQWKDA
Sbjct:  273 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEIEEAVRAMANRKAVGPDDLQAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDA 382
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.460e-19
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D    R+RW R+F  LLN KS  +D +   R  Q P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  DR  LRE H +   +W+ G VPQQWKDA
Sbjct:  300 VLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDA 409
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.470e-19
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D    R+RW R+F  LLN KS  +D +   R  Q P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  DR  LRE H +   +W+ G VPQQWKDA
Sbjct:   85 VLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDA 194
[Close]
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.470e-19
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTEEEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQGKVPQQWKDA 330
            +L D    R+RW R+F  LLN KS  +D +   R  Q P    L    +  E+  A++ ++N KAVGPD L AEL+KL L  DR  LRE H +   +W+ G VPQQWKDA
Sbjct:  438 VLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDA 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6697.14295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L012_9PHAE3.020e-2042.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQE0_9PHAE7.160e-2041.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0F8_9PHAE8.900e-2042.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JY74_9PHAE9.230e-2044.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE31_9PHAE1.240e-1944.55Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKB2_9PHAE1.430e-1944.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JP02_9PHAE1.440e-1944.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z5_9PHAE1.460e-1944.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE1.470e-1944.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE1.470e-1944.55Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6697contigH-elongata_contig6697:1..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog6500.XP_005100548.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3E41I@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.2490985-CDS-H-elongata_contig6697:0..3301622931059.2490985-CDS-H-elongata_contig6697:0..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6697 1..330 -
1691679681.03347-CDS-H-elongata_contig6697:0..3301691679681.03347-CDS-H-elongata_contig6697:0..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6697 1..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6697.14295.1prot_H-elongata_contig6697.14295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6697 1..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6697.14295.1

>prot_H-elongata_contig6697.14295.1 ID=prot_H-elongata_contig6697.14295.1|Name=mRNA_H-elongata_contig6697.14295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MLCDKGRIRERWVRFFRSLLNAKSDMLDPNIPKRFPQHPVASALGIESTE
EEITTAMKAVSNAKAVGPDGLLAELLKLRLQQDRTILRELHRLTTIIWRQ
GKVPQQWKDA
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mRNA from alignment at H-elongata_contig6697:1..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6697.14295.1 ID=mRNA_H-elongata_contig6697.14295.1|Name=mRNA_H-elongata_contig6697.14295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig6697:1..330- (Himanthalia elongata Himel1 dioecious)
ATGCTATGCGACAAAGGGCGTATCCGCGAGAGGTGGGTGCGATTCTTCCG
CTCGCTCTTGAACGCGAAATCCGACATGCTCGATCCCAACATCCCGAAGA
GGTTTCCACAGCATCCAGTCGCGAGTGCCCTCGGGATCGAGTCCACGGAG
GAGGAGATTACCACAGCGATGAAGGCAGTGTCAAACGCGAAAGCAGTGGG
GCCGGATGGCCTTCTCGCGGAACTGCTAAAACTCAGACTTCAACAAGACC
GGACCATCCTGAGGGAGCTCCATCGGCTAACCACCATCATCTGGCGTCAG
GGGAAAGTCCCGCAGCAGTGGAAAGACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig6697:1..330-

>mRNA_H-elongata_contig6697.14295.1 ID=mRNA_H-elongata_contig6697.14295.1|Name=mRNA_H-elongata_contig6697.14295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig6697:1..330- (Himanthalia elongata Himel1 dioecious)
ATGCTATGCGACAAAGGGCGTATCCGCGAGAGGTGGGTGCGATTCTTCCG
CTCGCTCTTGAACGCGAAATCCGACATGCTCGATCCCAACATCCCGAAGA
GGTTTCCACAGCATCCAGTCGCGAGTGCCCTCGGGATCGAGTCCACGGAG
GAGGAGATTACCACAGCGATGAAGGCAGTGTCAAACGCGAAAGCAGTGGG
GCCGGATGGCCTTCTCGCGGAACTGCTAAAACTCAGACTTCAACAAGACC
GGACCATCCTGAGGGAGCTCCATCGGCTAACCACCATCATCTGGCGTCAG
GGGAAAGTCCCGCAGCAGTGGAAAGACGCGATGCTATGCGACAAAGGGCG
TATCCGCGAGAGGTGGGTGCGATTCTTCCGCTCGCTCTTGAACGCGAAAT
CCGACATGCTCGATCCCAACATCCCGAAGAGGTTTCCACAGCATCCAGTC
GCGAGTGCCCTCGGGATCGAGTCCACGGAGGAGGAGATTACCACAGCGAT
GAAGGCAGTGTCAAACGCGAAAGCAGTGGGGCCGGATGGCCTTCTCGCGG
AACTGCTAAAACTCAGACTTCAACAAGACCGGACCATCCTGAGGGAGCTC
CATCGGCTAACCACCATCATCTGGCGTCAGGGGAAAGTCCCGCAGCAGTG
GAAAGACGCG
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