prot_H-elongata_contig66940.14292.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66940.14292.1
Unique Nameprot_H-elongata_contig66940.14292.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length122
Homology
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BLAST of mRNA_H-elongata_contig66940.14292.1 vs. uniprot
Match: D7FU11_ECTSI (BRO1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU11_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.830e-40
Identity = 75/121 (61.98%), Postives = 95/121 (78.51%), Query Frame = 0 
Query:    1 MEERRDAVSVGLPPLSGPLRDIYHDVQELRGQFRGLRDSYIKDNQSIYYESIPSSDLLDPLPEAVVMMKLIPSEEKSPLPQILSFRTPGSAAKEEEEEGANGGD-QKTDEQIARELFEKLN 120
            +EERRDAVSVGLPPL+GPLR+I HD++ L+G+FR LRD+Y KDN SIYYE +P  D+LDPLP+ VVMMK +PSEE++P  + LSFR  GSA  EE ++ +   D  KTDE++AR L EKLN
Sbjct:  280 VEERRDAVSVGLPPLAGPLRNISHDLKTLQGEFRQLRDAYAKDNNSIYYEPVPDLDMLDPLPQPVVMMKPLPSEEEAPPTETLSFRATGSAPGEEPKDASGLPDADKTDEELARALHEKLN 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66940.14292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU11_ECTSI4.830e-4061.98BRO1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66940contigH-elongata_contig66940:2112..3008 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66940.14292.1mRNA_H-elongata_contig66940.14292.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66940 1115..3346 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66940.14292.1 ID=prot_H-elongata_contig66940.14292.1|Name=mRNA_H-elongata_contig66940.14292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MEERRDAVSVGLPPLSGPLRDIYHDVQELRGQFRGLRDSYIKDNQSIYYE
SIPSSDLLDPLPEAVVMMKLIPSEEKSPLPQILSFRTPGSAAKEEEEEGA
NGGDQKTDEQIARELFEKLNM*
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