mRNA_H-elongata_contig66873.14289.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: D7FKZ0_ECTSI (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ0_ECTSI) HSP 1 Score: 116 bits (291), Expect = 9.720e-29 Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 1
Query: 1 QESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
+ES +RSM +LIHGDAAFAGQGVVYETMQ+SR DFAVGG IHVIV GFTT+P N RSTEYCSD+GKTFE+ +
Sbjct: 355 KESKQRSMSVLIHGDAAFAGQGVVYETMQLSRVNDFAVGGTIHVIVNNQVGFTTDPRNSRSTEYCSDLGKTFEIPI 430
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A835Z9M1_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M1_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.250e-25 Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
ES ++M +L+HGDAAFAGQGVVYETMQ+ R D++ GG IHVIV GFTT+PEN RST+YCSD+GKTFE+ +
Sbjct: 372 ESKLKAMAVLLHGDAAFAGQGVVYETMQLMRVADYSTGGTIHVIVNNQVGFTTDPENDRSTDYCSDLGKTFEIPI 446
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S3DPD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPD1_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.250e-25 Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
E +R +PIL+HGDAAFAGQGVVYETMQM+ DF VGG IHV+V GFTTNP + RST YCSD+GK F +
Sbjct: 13 EDIRNVVPILLHGDAAFAGQGVVYETMQMAHVDDFDVGGTIHVVVNNQIGFTTNPNHSRSTPYCSDLGKAFNCPI 87
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A482S454_9ARCH (2-oxoglutarate dehydrogenase E1 component (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S454_9ARCH) HSP 1 Score: 105 bits (263), Expect = 3.610e-25 Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
E +R MP+L+HGDAAFAGQGVVYET+QM+R DFAVGG IHVIV GFTT+P NGRST+Y SD+ K F++ +
Sbjct: 377 EDKKRHMPVLLHGDAAFAGQGVVYETLQMARVPDFAVGGTIHVIVNNQVGFTTDPRNGRSTQYSSDLAKAFDLPI 451
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S1MLS1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MLS1_ALECA) HSP 1 Score: 101 bits (251), Expect = 5.080e-25 Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 1 QESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
+ES +R MPI++HGDA+FAGQGVVYE+MQ+ DF VGG IHVIV GFTT+P RSTEYCSD+GK F V +
Sbjct: 98 EESKKRVMPIIMHGDASFAGQGVVYESMQLGNVEDFDVGGTIHVIVNNQVGFTTDPRYSRSTEYCSDLGKAFGVPI 173
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A1E7FW89_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW89_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.500e-24 Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
E +R +PIL+HGDAAFAGQGVVYETMQ++ DFAVGG IHVIV GFTTNP N RST YCSD+GK F +
Sbjct: 410 EDVRNCVPILLHGDAAFAGQGVVYETMQLANVEDFAVGGTIHVIVNNQIGFTTNPINSRSTPYCSDLGKAFNCPI 484
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S0SW70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SW70_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.650e-24 Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 1 QESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
++ + MP+L+HGDAAFAGQGVVYETMQMS+ D+ VGG IHVIV GFTT+P+NGRST Y SD+GK F + +
Sbjct: 195 EQDKLKHMPVLLHGDAAFAGQGVVYETMQMSKVPDYDVGGTIHVIVNNQVGFTTDPKNGRSTLYSSDLGKAFNIPI 270
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S1ZWD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWD4_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.820e-24 Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
E R +PIL+HGDAAFAGQGVVYETMQ+++ DF VGG IHV+V GFTTNP + RST YCSDIGK F +
Sbjct: 104 EDTRNVVPILLHGDAAFAGQGVVYETMQLAKVPDFDVGGTIHVVVNNQIGFTTNPVHSRSTPYCSDIGKAFGAPI 178
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A7S0GI93_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GI93_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.010e-24 Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
E +R +PIL+HGD+AFAGQGVVYETMQM++ DF VGG IHVIV GFTTNP N RST YC+D+GKTF+ +
Sbjct: 42 EDVRNVVPILLHGDSAFAGQGVVYETMQMAKVRDFDVGGTIHVIVNNQIGFTTNPVNSRSTPYCTDLGKTFDCPI 116
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Match: A0A448ZD84_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD84_9STRA) HSP 1 Score: 103 bits (256), Expect = 5.220e-24 Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 4 ESMRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIV----GFTTNPENGRSTEYCSDIGKTFEVSV 216
E +R +PIL+HGDAAFAGQGVVYETMQ++ DFAVGG IHVIV G+TTNP N RST YCSD+GK F +
Sbjct: 416 EDVRNVVPILLHGDAAFAGQGVVYETMQLANVKDFAVGGTIHVIVNNQIGYTTNPINSRSTPYCSDLGKAFNCPI 490 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66873.14289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66873.14289.1 >prot_H-elongata_contig66873.14289.1 ID=prot_H-elongata_contig66873.14289.1|Name=mRNA_H-elongata_contig66873.14289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp MRRSMPILIHGDAAFAGQGVVYETMQMSRTVDFAVGGAIHVIVGFTTNPEback to top mRNA from alignment at H-elongata_contig66873:1876..2949- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66873.14289.1 ID=mRNA_H-elongata_contig66873.14289.1|Name=mRNA_H-elongata_contig66873.14289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig66873:1876..2949- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66873:1876..2949- >mRNA_H-elongata_contig66873.14289.1 ID=mRNA_H-elongata_contig66873.14289.1|Name=mRNA_H-elongata_contig66873.14289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig66873:1876..2949- (Himanthalia elongata Himel1 dioecious)back to top |