prot_H-elongata_contig66824.14283.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66824.14283.1
Unique Nameprot_H-elongata_contig66824.14283.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length195
Homology
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.460e-37
Identity = 84/190 (44.21%), Postives = 113/190 (59.47%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G         PQ   E EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct:  126 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADL-----GPQR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 307          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 8.070e-37
Identity = 82/190 (43.16%), Postives = 112/190 (58.95%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct:  190 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 371          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.680e-36
Identity = 82/190 (43.16%), Postives = 112/190 (58.95%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct:  903 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1084          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.690e-36
Identity = 82/190 (43.16%), Postives = 113/190 (59.47%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   R+ +G++MW +T +R D+SFAA  +A+    P   HW A QK L YL  TRDLGITY
Sbjct: 1012 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1193          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.890e-36
Identity = 82/190 (43.16%), Postives = 112/190 (58.95%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct: 1282 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1463          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.920e-36
Identity = 82/190 (43.16%), Postives = 112/190 (58.95%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct: 1302 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1483          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.950e-36
Identity = 82/190 (43.16%), Postives = 112/190 (58.95%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct: 1445 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1626          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.950e-35
Identity = 80/186 (43.01%), Postives = 110/186 (59.14%), Query Frame = 0
Query:   10 GFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   + +    P   HW A QK L YL  TRDLGITY
Sbjct:  844 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1021          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.650e-35
Identity = 80/190 (42.11%), Postives = 113/190 (59.47%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD +AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L ++  TRDLGITY
Sbjct:  538 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFMKGTRDLGITY 719          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.280e-35
Identity = 81/190 (42.63%), Postives = 113/190 (59.47%), Query Frame = 0
Query:    6 LEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 195
            L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD +AGTL   Q  YI +M ERF V  TS I +  G     K +        ++  +   RE VG++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct:  494 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------DKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 675          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVD4_9PHAE4.460e-3744.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE8.070e-3743.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE7.680e-3643.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE7.690e-3643.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE7.890e-3643.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.920e-3643.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE7.950e-3643.16Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JRE9_9PHAE1.950e-3543.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE2.650e-3542.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE3.280e-3542.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 6..107
e-value: 1.1E-12
score: 48.1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 43..195
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 22..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66824contigH-elongata_contig66824:2765..3349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66824.14283.1mRNA_H-elongata_contig66824.14283.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66824 2276..3349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66824.14283.1 ID=prot_H-elongata_contig66824.14283.1|Name=mRNA_H-elongata_contig66824.14283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDK
EQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGER
FGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAAT
MTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2