mRNA_H-elongata_contig66766.14279.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: A0A7S2V4F7_9STRA (Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4F7_9STRA) HSP 1 Score: 164 bits (414), Expect = 5.570e-44 Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 67 PNKLRYTRFSPSVNAPSTQHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFSDR 405
P+ L R P + + QH GK TVL+V ESTTILEAALD GI+LPHDC+LGVCLTCPSRIVSGEVDQ GTLDDSVV+QGFALTC +YP+SD V+R VEED++V AQF+DR
Sbjct: 38 PSSLSRQRLVPKAHQVTIQHEGKDTVLEVDESTTILEAALDAGIDLPHDCQLGVCLTCPSRIVSGEVDQGMGTLDDSVVEQGFALTCISYPRSDCVVRSVEEDEMVNAQFADR 150
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: A0A6H5KV05_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV05_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.080e-42 Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 1
Query: 61 AHPNKLRYTRFSPSVNAPSTQHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFSDRS 408
A LR T + ++ + +H G STVL+V E+TTILEAALDN I+LPHDCKLGVCLTCPS++VSGEVDQSDGTL+DSV G+ALTCC Y +SDV IR VEED+LVGAQFSDRS
Sbjct: 49 ARQETLRPTFSALQMHQVTIEHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDRS 164
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: A0A836CGC2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC2_9STRA) HSP 1 Score: 150 bits (378), Expect = 7.470e-39 Identity = 69/93 (74.19%), Postives = 82/93 (88.17%), Query Frame = 1
Query: 127 AGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFSDR 405
AGKS L+V E T++LEAALD GIELPHDCKLGVCLTCPS+IVSGEVDQ TLDDSVV+QG+ALTCC++P+SD+VIR ++ED+LVGAQF R
Sbjct: 62 AGKSHTLEVDEKTSVLEAALDAGIELPHDCKLGVCLTCPSKIVSGEVDQDGTTLDDSVVEQGYALTCCSFPRSDLVIRAIDEDELVGAQFEGR 154
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: A0A7S3UW21_HETAK (Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW21_HETAK) HSP 1 Score: 147 bits (370), Expect = 6.680e-38 Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 1
Query: 43 PIVLTIAHPNKLRYTRFSPSVNAPSTQHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFSDRS 408
P+VL +++ +R P + + +H G +TVL+V E T+IL+AALD GI+LPHDCKLGVCLTCPS++VSGEVDQSDGTL+DSV QG+ALTC +P+SD I + ED+LV AQFS RS
Sbjct: 25 PVVLK----TRVKSSRIVPKAHQVTIEHEGTTTVLEVPEYTSILDAALDAGIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTAQGYALTCMTFPRSDCTIMSITEDELVDAQFSGRS 142
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: A0A482SDV3_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDV3_9ARCH) HSP 1 Score: 141 bits (355), Expect = 8.720e-36 Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1
Query: 94 SPSVNAPS----TQHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFSDRS 408
SPS++A + QH GK T+LDV + +IL AALD GI+LPHDCKLGVCLTCPS+IVSG+VDQSDGTL SV +G+ALTC ++P SDVV+R +EED+LV AQFS S
Sbjct: 35 SPSLHAKTYKVTIQHEGKDTILDVQDDCSILNAALDAGIDLPHDCKLGVCLTCPSKIVSGKVDQSDGTLAKSVQAKGYALTCVSFPCSDVVVRSIEEDELVSAQFSRNS 143
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: A0A8J5WV81_ZIZPA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WV81_ZIZPA) HSP 1 Score: 127 bits (320), Expect = 6.500e-31 Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 121 QHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFS 399
+HAG+S V++V E TILE ALD GI++PHDCKLGVC+TCP+R+V+G+VDQSDG L D VV QG+AL C +YP+SD IR + ED+L+ Q +
Sbjct: 48 EHAGESRVVEVEEHETILERALDEGIDVPHDCKLGVCMTCPARLVAGQVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQLA 140
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: UPI001ADA50ED (ferredoxin C 1, chloroplastic n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADA50ED) HSP 1 Score: 125 bits (315), Expect = 2.990e-30 Identity = 55/93 (59.14%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 121 QHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFS 399
+H G+S V++V E TIL ALD GI++PHDCKLGVC+TCP+R+V+GEVDQSDG L D VV QG+AL C +YP+SD IR + ED+L+ Q +
Sbjct: 46 EHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQLA 138
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: Q850T5_ORYSJ (Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_ORYSJ) HSP 1 Score: 125 bits (315), Expect = 3.470e-30 Identity = 55/93 (59.14%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 121 QHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFS 399
+H G+S V++V E TIL ALD GI++PHDCKLGVC+TCP+R+V+GEVDQSDG L D VV QG+AL C +YP+SD IR + ED+L+ Q +
Sbjct: 51 EHGGESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLKVQLA 143
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: J3LRB4_ORYBR (Ferredoxin n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LRB4_ORYBR) HSP 1 Score: 125 bits (315), Expect = 4.020e-30 Identity = 55/93 (59.14%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 121 QHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFS 399
+H G+S V++V E TIL ALD GI++PHDCKLGVC+TCP+R+V+GEVDQSDG L D VV QG+AL C +YP+SD IR + ED+L+ Q +
Sbjct: 56 EHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQLA 148
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Match: A0A2G9HQV3_9LAMI (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HQV3_9LAMI) HSP 1 Score: 125 bits (315), Expect = 4.270e-30 Identity = 61/128 (47.66%), Postives = 89/128 (69.53%), Query Frame = 1
Query: 28 FHPIVPIVLTIAHPNKL--RYTRFSPSVNAPST--QHAGKSTVLDVSESTTILEAALDNGIELPHDCKLGVCLTCPSRIVSGEVDQSDGTLDDSVVQQGFALTCCAYPKSDVVIRCVEEDQLVGAQFS 399
FHP P + + PN+L R+ R S +V A +H G++T L+V TIL ALD+G+ +PHDCKLGVC+TCP+R+VSG+VDQS+G L D VV++G+AL C +YP+SD I+ + E++L+ Q +
Sbjct: 23 FHPNTPYLKPHSTPNRLHLRHCRRSTAVKAYKVLIEHGGETTELEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLVSGKVDQSEGMLSDDVVERGYALMCSSYPRSDCRIKIIPEEELLSLQLA 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66766.14279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66766.14279.1 >prot_H-elongata_contig66766.14279.1 ID=prot_H-elongata_contig66766.14279.1|Name=mRNA_H-elongata_contig66766.14279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MERERCAEIFHPIVPIVLTIAHPNKLRYTRFSPSVNAPSTQHAGKSTVLDback to top mRNA from alignment at H-elongata_contig66766:854..2990+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66766.14279.1 ID=mRNA_H-elongata_contig66766.14279.1|Name=mRNA_H-elongata_contig66766.14279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2137bp|location=Sequence derived from alignment at H-elongata_contig66766:854..2990+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66766:854..2990+ >mRNA_H-elongata_contig66766.14279.1 ID=mRNA_H-elongata_contig66766.14279.1|Name=mRNA_H-elongata_contig66766.14279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig66766:854..2990+ (Himanthalia elongata Himel1 dioecious)back to top |