mRNA_H-elongata_contig6676.14278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6676.14278.1
Unique NamemRNA_H-elongata_contig6676.14278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6676.14278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6676contigH-elongata_contig6676:7079..9377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2299
Cds size2025
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6676.14278.1prot_H-elongata_contig6676.14278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6676 7121..9145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.515237-UTR-H-elongata_contig6676:7078..71201622931057.515237-UTR-H-elongata_contig6676:7078..7120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6676 7079..7120 +
1691679680.4202917-UTR-H-elongata_contig6676:7078..71201691679680.4202917-UTR-H-elongata_contig6676:7078..7120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6676 7079..7120 +
1622931057.552573-UTR-H-elongata_contig6676:9145..93771622931057.552573-UTR-H-elongata_contig6676:9145..9377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6676 9146..9377 +
1691679680.4385576-UTR-H-elongata_contig6676:9145..93771691679680.4385576-UTR-H-elongata_contig6676:9145..9377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6676 9146..9377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.534115-CDS-H-elongata_contig6676:7120..91451622931057.534115-CDS-H-elongata_contig6676:7120..9145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6676 7121..9145 +
1691679680.4293041-CDS-H-elongata_contig6676:7120..91451691679680.4293041-CDS-H-elongata_contig6676:7120..9145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6676 7121..9145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6676.14278.1

>prot_H-elongata_contig6676.14278.1 ID=prot_H-elongata_contig6676.14278.1|Name=mRNA_H-elongata_contig6676.14278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=675bp
MSDFASKRCASDGCFKRPGYGVAGSKKARYCAVHALEGMVDVVSKRCAGT
GCSKHPSYGIIGSKKPEYCALHALEGMMNVQNKDCAIDGCFKRHSYGVAG
TKKAEYCSVHALEGMVDVVSKRCAGNGCLTHPSYGVAGSRKPEYCAIHAM
DGMVHIGESCGSDGCSKQPSYGVAGSRKREYCAVHALQGMINIVRKMCSS
DGCFKLPSYGVAYSKKAEYCVVHALQGMVNVVSKRCSSDGCYKHPSYGMI
GSKKAEYCAVHALEGMIHVPSKGCAIDGCFKRHSYGVAGTKKAEYCSVHA
LEGMVDVVSRRCAGIGCYKHPSYGMIGSKKAEYCVVHALEGMINVQNKGC
AVDGCFKRHSHGMAGTKKAEYCSVHAINGMVDVVSKRCASTGCSKHPSYG
IIGSKKPEYCAIHAMNGMVRVGERCGSDGCSKRPSYGVAGSRKREYCAVH
ALQGMINVVRKMCSSDKCFKHPSYGVADSKKAEYCAVHASKGMVNFARKR
CAGEGCFKQPMYSVAGSKKSEYCAMHSLEGMINVKRKMCAEDESCKQQSY
GVAGSKNPEYCAVHALEGMTDVVNNRCASDGCIERPSYGLAGSKKAEYCV
VHALQGMIDVAIKRCDGGILAAQNQAKARKRMPETAAREVSILERKSTTK
FQRLCYKAVSDAERVKIEMPLSLS*
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mRNA from alignment at H-elongata_contig6676:7079..9377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6676.14278.1 ID=mRNA_H-elongata_contig6676.14278.1|Name=mRNA_H-elongata_contig6676.14278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2299bp|location=Sequence derived from alignment at H-elongata_contig6676:7079..9377+ (Himanthalia elongata Himel1 dioecious)
AGATCATTGTGAACACTTGTGCGGTTCATAACTTTAAGAAGAATGAGTGA
CTTCGCCAGCAAGAGGTGCGCTAGCGATGGATGCTTTAAGCGGCCAGGCT
ATGGCGTGGCCGGCAGCAAGAAAGCAAGGTACTGCGCGGTGCATGCTTTG
GAAGGGATGGTCGACGTTGTAAGTAAGAGGTGTGCTGGTACTGGATGCTC
TAAGCATCCGAGTTATGGCATAATCGGCAGCAAGAAACCGGAATATTGCG
CGTTGCATGCTTTGGAAGGAATGATGAACGTTCAGAACAAGGATTGTGCT
ATTGATGGATGCTTTAAACGTCATAGCTATGGCGTGGCCGGTACCAAGAA
AGCGGAATACTGTTCGGTACATGCTTTAGAAGGGATGGTCGACGTTGTGA
GCAAGAGGTGTGCTGGTAATGGATGCCTTACGCATCCAAGTTATGGCGTG
GCCGGCAGTAGGAAACCGGAATACTGCGCGATACATGCTATGGATGGGAT
GGTCCACATTGGGGAAAGCTGCGGGAGTGATGGATGCTCTAAGCAACCGA
GCTACGGAGTCGCCGGTAGCAGAAAACGTGAGTACTGCGCGGTGCATGCT
CTCCAAGGGATGATCAACATTGTAAGGAAAATGTGTTCTAGTGATGGATG
CTTCAAGCTTCCAAGTTATGGCGTGGCCTACAGCAAAAAAGCGGAATATT
GCGTAGTGCATGCTTTGCAAGGGATGGTCAACGTTGTAAGCAAGAGGTGT
TCCAGTGATGGATGCTATAAGCATCCGAGTTATGGTATGATTGGCAGCAA
GAAGGCGGAATATTGCGCGGTGCATGCTTTGGAAGGAATGATCCACGTTC
CGAGCAAGGGTTGTGCTATTGATGGATGCTTTAAACGTCACAGCTATGGC
GTGGCTGGTACCAAGAAAGCGGAATACTGTTCGGTACATGCTTTAGAAGG
GATGGTCGACGTTGTAAGTAGGCGGTGTGCTGGTATTGGATGCTATAAGC
ATCCGAGTTATGGTATGATTGGCAGCAAGAAGGCGGAATATTGCGTGGTG
CATGCTTTGGAAGGAATGATAAACGTTCAGAACAAGGGTTGTGCTGTTGA
TGGATGCTTTAAACGTCACAGTCATGGTATGGCCGGTACTAAGAAAGCGG
AATATTGTTCGGTGCATGCTATAAATGGGATGGTCGACGTTGTGAGCAAG
AGATGTGCTAGTACTGGATGCTCTAAACATCCGAGTTATGGCATAATCGG
CAGCAAGAAGCCGGAATATTGCGCGATACATGCTATGAATGGGATGGTCC
GCGTTGGGGAAAGGTGCGGGAGTGATGGATGCTCTAAGCGTCCAAGCTAC
GGAGTCGCCGGCAGCAGAAAACGCGAGTACTGCGCGGTGCATGCTCTCCA
AGGAATGATCAATGTTGTAAGGAAAATGTGTTCTAGTGATAAATGCTTCA
AGCATCCAAGTTATGGTGTAGCCGACAGCAAAAAAGCAGAATACTGCGCG
GTGCATGCTTCAAAGGGGATGGTCAATTTCGCGAGAAAGAGGTGTGCAGG
TGAGGGATGTTTTAAGCAACCTATGTATAGCGTGGCTGGCAGCAAGAAAT
CGGAATACTGCGCGATGCATTCCTTAGAAGGGATGATCAACGTTAAACGC
AAGATGTGTGCGGAGGATGAAAGCTGTAAGCAACAGAGTTATGGCGTGGC
TGGCAGCAAGAACCCGGAGTACTGTGCGGTGCATGCTTTGGAAGGGATGA
CCGATGTTGTGAATAATAGATGCGCTAGTGATGGATGCATTGAGCGTCCG
AGTTATGGCCTAGCCGGTAGCAAGAAAGCGGAATACTGCGTGGTGCATGC
TTTGCAAGGGATGATTGACGTTGCGATCAAGAGGTGTGATGGTGGTATTT
TGGCTGCACAAAATCAGGCTAAGGCCAGGAAGCGAATGCCCGAGACTGCT
GCACGTGAAGTATCTATTCTCGAGAGAAAAAGCACAACTAAGTTTCAACG
CCTCTGTTATAAAGCAGTATCAGATGCAGAGAGGGTCAAAATTGAGATGC
CACTATCTCTATCCTAGTATATAACTTCTTCGAAGTTAAAGGTTGTAAAG
AATATGCTAAAGACCATACAGGGTTTCTGCGCTCCGGGTTTACCATGCCT
CCAAAGTGGTCTCAAATTACATGTTGCAACCAACAGTTGACAGGGAGGCT
TATTTGTTTGATCTGGTTAGAGGCCGAAAGAAATGAAGATGCCAAACTTT
GTTGTATTTGGTGCATTTAAATTAAAAAAAAATACGCACGAGTGCCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig6676:7079..9377+

>mRNA_H-elongata_contig6676.14278.1 ID=mRNA_H-elongata_contig6676.14278.1|Name=mRNA_H-elongata_contig6676.14278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4050bp|location=Sequence derived from alignment at H-elongata_contig6676:7079..9377+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGACTTCGCCAGCAAGAGGTGCGCTAGCGATGGATGCTTTAAGCG
GCCAGGCTATGGCGTGGCCGGCAGCAAGAAAGCAAGGTACTGCGCGGTGC
ATGCTTTGGAAGGGATGGTCGACGTTGTAAGTAAGAGGTGTGCTGGTACT
GGATGCTCTAAGCATCCGAGTTATGGCATAATCGGCAGCAAGAAACCGGA
ATATTGCGCGTTGCATGCTTTGGAAGGAATGATGAACGTTCAGAACAAGG
ATTGTGCTATTGATGGATGCTTTAAACGTCATAGCTATGGCGTGGCCGGT
ACCAAGAAAGCGGAATACTGTTCGGTACATGCTTTAGAAGGGATGGTCGA
CGTTGTGAGCAAGAGGTGTGCTGGTAATGGATGCCTTACGCATCCAAGTT
ATGGCGTGGCCGGCAGTAGGAAACCGGAATACTGCGCGATACATGCTATG
GATGGGATGGTCCACATTGGGGAAAGCTGCGGGAGTGATGGATGCTCTAA
GCAACCGAGCTACGGAGTCGCCGGTAGCAGAAAACGTGAGTACTGCGCGG
TGCATGCTCTCCAAGGGATGATCAACATTGTAAGGAAAATGTGTTCTAGT
GATGGATGCTTCAAGCTTCCAAGTTATGGCGTGGCCTACAGCAAAAAAGC
GGAATATTGCGTAGTGCATGCTTTGCAAGGGATGGTCAACGTTGTAAGCA
AGAGGTGTTCCAGTGATGGATGCTATAAGCATCCGAGTTATGGTATGATT
GGCAGCAAGAAGGCGGAATATTGCGCGGTGCATGCTTTGGAAGGAATGAT
CCACGTTCCGAGCAAGGGTTGTGCTATTGATGGATGCTTTAAACGTCACA
GCTATGGCGTGGCTGGTACCAAGAAAGCGGAATACTGTTCGGTACATGCT
TTAGAAGGGATGGTCGACGTTGTAAGTAGGCGGTGTGCTGGTATTGGATG
CTATAAGCATCCGAGTTATGGTATGATTGGCAGCAAGAAGGCGGAATATT
GCGTGGTGCATGCTTTGGAAGGAATGATAAACGTTCAGAACAAGGGTTGT
GCTGTTGATGGATGCTTTAAACGTCACAGTCATGGTATGGCCGGTACTAA
GAAAGCGGAATATTGTTCGGTGCATGCTATAAATGGGATGGTCGACGTTG
TGAGCAAGAGATGTGCTAGTACTGGATGCTCTAAACATCCGAGTTATGGC
ATAATCGGCAGCAAGAAGCCGGAATATTGCGCGATACATGCTATGAATGG
GATGGTCCGCGTTGGGGAAAGGTGCGGGAGTGATGGATGCTCTAAGCGTC
CAAGCTACGGAGTCGCCGGCAGCAGAAAACGCGAGTACTGCGCGGTGCAT
GCTCTCCAAGGAATGATCAATGTTGTAAGGAAAATGTGTTCTAGTGATAA
ATGCTTCAAGCATCCAAGTTATGGTGTAGCCGACAGCAAAAAAGCAGAAT
ACTGCGCGGTGCATGCTTCAAAGGGGATGGTCAATTTCGCGAGAAAGAGG
TGTGCAGGTGAGGGATGTTTTAAGCAACCTATGTATAGCGTGGCTGGCAG
CAAGAAATCGGAATACTGCGCGATGCATTCCTTAGAAGGGATGATCAACG
TTAAACGCAAGATGTGTGCGGAGGATGAAAGCTGTAAGCAACAGAGTTAT
GGCGTGGCTGGCAGCAAGAACCCGGAGTACTGTGCGGTGCATGCTTTGGA
AGGGATGACCGATGTTGTGAATAATAGATGCGCTAGTGATGGATGCATTG
AGCGTCCGAGTTATGGCCTAGCCGGTAGCAAGAAAGCGGAATACTGCGTG
GTGCATGCTTTGCAAGGGATGATTGACGTTGCGATCAAGAGGTGTGATGG
TGGTATTTTGGCTGCACAAAATCAGGCTAAGGCCAGGAAGCGAATGCCCG
AGACTGCTGCACGTGAAGTATCTATTCTCGAGAGAAAAAGCACAACTAAG
TTTCAACGCCTCTGTTATAAAGCAGTATCAGATGCAGAGAGGGTCAAAAT
TGAGATGCCACTATCTCTATCCTAGATGAGTGACTTCGCCAGCAAGAGGT
GCGCTAGCGATGGATGCTTTAAGCGGCCAGGCTATGGCGTGGCCGGCAGC
AAGAAAGCAAGGTACTGCGCGGTGCATGCTTTGGAAGGGATGGTCGACGT
TGTAAGTAAGAGGTGTGCTGGTACTGGATGCTCTAAGCATCCGAGTTATG
GCATAATCGGCAGCAAGAAACCGGAATATTGCGCGTTGCATGCTTTGGAA
GGAATGATGAACGTTCAGAACAAGGATTGTGCTATTGATGGATGCTTTAA
ACGTCATAGCTATGGCGTGGCCGGTACCAAGAAAGCGGAATACTGTTCGG
TACATGCTTTAGAAGGGATGGTCGACGTTGTGAGCAAGAGGTGTGCTGGT
AATGGATGCCTTACGCATCCAAGTTATGGCGTGGCCGGCAGTAGGAAACC
GGAATACTGCGCGATACATGCTATGGATGGGATGGTCCACATTGGGGAAA
GCTGCGGGAGTGATGGATGCTCTAAGCAACCGAGCTACGGAGTCGCCGGT
AGCAGAAAACGTGAGTACTGCGCGGTGCATGCTCTCCAAGGGATGATCAA
CATTGTAAGGAAAATGTGTTCTAGTGATGGATGCTTCAAGCTTCCAAGTT
ATGGCGTGGCCTACAGCAAAAAAGCGGAATATTGCGTAGTGCATGCTTTG
CAAGGGATGGTCAACGTTGTAAGCAAGAGGTGTTCCAGTGATGGATGCTA
TAAGCATCCGAGTTATGGTATGATTGGCAGCAAGAAGGCGGAATATTGCG
CGGTGCATGCTTTGGAAGGAATGATCCACGTTCCGAGCAAGGGTTGTGCT
ATTGATGGATGCTTTAAACGTCACAGCTATGGCGTGGCTGGTACCAAGAA
AGCGGAATACTGTTCGGTACATGCTTTAGAAGGGATGGTCGACGTTGTAA
GTAGGCGGTGTGCTGGTATTGGATGCTATAAGCATCCGAGTTATGGTATG
ATTGGCAGCAAGAAGGCGGAATATTGCGTGGTGCATGCTTTGGAAGGAAT
GATAAACGTTCAGAACAAGGGTTGTGCTGTTGATGGATGCTTTAAACGTC
ACAGTCATGGTATGGCCGGTACTAAGAAAGCGGAATATTGTTCGGTGCAT
GCTATAAATGGGATGGTCGACGTTGTGAGCAAGAGATGTGCTAGTACTGG
ATGCTCTAAACATCCGAGTTATGGCATAATCGGCAGCAAGAAGCCGGAAT
ATTGCGCGATACATGCTATGAATGGGATGGTCCGCGTTGGGGAAAGGTGC
GGGAGTGATGGATGCTCTAAGCGTCCAAGCTACGGAGTCGCCGGCAGCAG
AAAACGCGAGTACTGCGCGGTGCATGCTCTCCAAGGAATGATCAATGTTG
TAAGGAAAATGTGTTCTAGTGATAAATGCTTCAAGCATCCAAGTTATGGT
GTAGCCGACAGCAAAAAAGCAGAATACTGCGCGGTGCATGCTTCAAAGGG
GATGGTCAATTTCGCGAGAAAGAGGTGTGCAGGTGAGGGATGTTTTAAGC
AACCTATGTATAGCGTGGCTGGCAGCAAGAAATCGGAATACTGCGCGATG
CATTCCTTAGAAGGGATGATCAACGTTAAACGCAAGATGTGTGCGGAGGA
TGAAAGCTGTAAGCAACAGAGTTATGGCGTGGCTGGCAGCAAGAACCCGG
AGTACTGTGCGGTGCATGCTTTGGAAGGGATGACCGATGTTGTGAATAAT
AGATGCGCTAGTGATGGATGCATTGAGCGTCCGAGTTATGGCCTAGCCGG
TAGCAAGAAAGCGGAATACTGCGTGGTGCATGCTTTGCAAGGGATGATTG
ACGTTGCGATCAAGAGGTGTGATGGTGGTATTTTGGCTGCACAAAATCAG
GCTAAGGCCAGGAAGCGAATGCCCGAGACTGCTGCACGTGAAGTATCTAT
TCTCGAGAGAAAAAGCACAACTAAGTTTCAACGCCTCTGTTATAAAGCAG
TATCAGATGCAGAGAGGGTCAAAATTGAGATGCCACTATCTCTATCCTAG
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