mRNA_H-elongata_contig66753.14277.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66753.14277.1
Unique NamemRNA_H-elongata_contig66753.14277.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66753.14277.1 vs. uniprot
Match: D7FV10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV10_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.000e-38
Identity = 85/141 (60.28%), Postives = 100/141 (70.92%), Query Frame = 1 
Query:    4 ENYFGHLALH-VQQEDDGDEDFEPSLLDVDLEEEXXXEEAGVRRRNIQSRELSDLLQDAYKQLGPSIVSPGLKERVLDQLSMHFQLLVQTSILALQARTQTSADRCDRGRNISLGMLEHLACRPNNAAKKGQGRRTRARGK 423
            E+ + H  L  + +EDDGDEDFEP ++D D E     EEAGVRRRNIQ+REL+DL+QDAYKQLG S VSPGL+ERVLDQLSMHFQLLVQT +LA +A + T  D+        +GMLEHLAC     A     RRTRARGK
Sbjct:   35 EDLYRHFLLDDMPEEDDGDEDFEPPVVDEDEE----GEEAGVRRRNIQARELNDLVQDAYKQLGTSAVSPGLRERVLDQLSMHFQLLVQTGVLASKAPS-TYRDQ----ETACVGMLEHLACGSGKHA-----RRTRARGK 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66753.14277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV10_ECTSI1.000e-3860.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66753contigH-elongata_contig66753:654..1860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-13_002110.1
Exons3
Model size423
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66753.14277.1prot_H-elongata_contig66753.14277.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66753 654..1860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.4286988-CDS-H-elongata_contig66753:653..7801622931057.4286988-CDS-H-elongata_contig66753:653..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66753 654..780 -
1691679680.3843784-CDS-H-elongata_contig66753:653..7801691679680.3843784-CDS-H-elongata_contig66753:653..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66753 654..780 -
1622931057.4474776-CDS-H-elongata_contig66753:1117..12271622931057.4474776-CDS-H-elongata_contig66753:1117..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66753 1118..1227 -
1691679680.3930662-CDS-H-elongata_contig66753:1117..12271691679680.3930662-CDS-H-elongata_contig66753:1117..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66753 1118..1227 -
1622931057.46277-CDS-H-elongata_contig66753:1674..18601622931057.46277-CDS-H-elongata_contig66753:1674..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66753 1675..1860 -
1691679680.4030035-CDS-H-elongata_contig66753:1674..18601691679680.4030035-CDS-H-elongata_contig66753:1674..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66753 1675..1860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66753.14277.1

>prot_H-elongata_contig66753.14277.1 ID=prot_H-elongata_contig66753.14277.1|Name=mRNA_H-elongata_contig66753.14277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
FENYFGHLALHVQQEDDGDEDFEPSLLDVDLEEEEEDEEAGVRRRNIQSR
ELSDLLQDAYKQLGPSIVSPGLKERVLDQLSMHFQLLVQTSILALQARTQ
TSADRCDRGRNISLGMLEHLACRPNNAAKKGQGRRTRARGK
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mRNA from alignment at H-elongata_contig66753:654..1860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66753.14277.1 ID=mRNA_H-elongata_contig66753.14277.1|Name=mRNA_H-elongata_contig66753.14277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-elongata_contig66753:654..1860- (Himanthalia elongata Himel1 dioecious)
TTTGAAAATTACTTTGGGCATTTGGCACTCCATGTTCAACAGGAGGACGA
TGGGGACGAGGACTTCGAGCCGTCCCTCCTGGACGTCGACCTTGAAGAGG
AAGAGGAGGACGAGGAAGCTGGTGTCCGACGCCGCAACATCCAATCACGG
GAGTTGAGCGACCTCCTCCAAGACGCCTACAAGCAGGTGACGTGAAGACT
TGATGCACTCACTCTGCTCAATTTGGACCATACTGCATCATCAACAAACT
AGTGCACTGGTCCCCTTTTCGTATAAACAAGAGACCAAACGACCATTAAG
AATGAGTCGGACTGCTCCTACTGGACCCTGTGCCCTGGACCCCTCATTCG
AATTATTATTTTTCTCGGAGGTGGCAGGTGAGCGTAACCATGCATTACAT
TACATTATTTAGTACATTCAGGATGAGAGACAGCACAACAATGCTTTTCC
CACCGTAGGTCTGCGTGTACCTTCTTCGATAATAATACTAATAATAGTAC
AAAGTCGGTGCTCGTTAGCATAACTAGGCTGTCGAGGTATGATTTCATTG
AGCACTCAACTCCTAACAGAGTAGTTATAATCTATCGTGCGTGCCTTTTG
TGCATCGTGTCTATTCCGTCCGTATTGTATCAGTTGGGGCCCTCGATCGT
CTCTCCAGGCTTGAAGGAAAGGGTGCTCGATCAGTTATCGATGCATTTCC
AGCTTCTCGTCCAAACATCGATTCTAGCTCTGCAGGCAAGGACGTTTATG
CGGTATTAGAACACAGCAGTGGCAGCAGTCGCAAAAGAAAATATATGAAG
GTGTTACCCGCGCATTGAACACTTCAAAACGAAGAACGTGGTTGATTCCT
AGATTGCATTGCTACATACAGGGGCGCGAAACGAAGTGTCGGTCTATTAG
CACGGAACAGTAACAAAGGGCCAAGATCTCAACATCCATCTCTCAAGAAG
ATCTGCAGGGAGAACTCTTGCAGAGAGTCGGAAAATCGGTAGATATAGTC
AAACCTTCGAGCGTTCCTCAATCTCGTCCGTCTATCCCGGCGGCCTCAAT
CTCGCCCAACATTTCCTCGTTGGCTTCGAGGCAGACGTCGGCAGACCGCT
GTGATCGAGGCCGCAACATTTCCCTCGGCATGCTGGAACATCTCGCTTGC
AGACCGAATAACGCTGCAAAAAAAGGGCAAGGGCGAAGAACACGCGCACG
GGGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig66753:654..1860-

>mRNA_H-elongata_contig66753.14277.1 ID=mRNA_H-elongata_contig66753.14277.1|Name=mRNA_H-elongata_contig66753.14277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig66753:654..1860- (Himanthalia elongata Himel1 dioecious)
TTTGAAAATTACTTTGGGCATTTGGCACTCCATGTTCAACAGGAGGACGA
TGGGGACGAGGACTTCGAGCCGTCCCTCCTGGACGTCGACCTTGAAGAGG
AAGAGGAGGACGAGGAAGCTGGTGTCCGACGCCGCAACATCCAATCACGG
GAGTTGAGCGACCTCCTCCAAGACGCCTACAAGCAGTTTGAAAATTACTT
TGGGCATTTGGCACTCCATGTTCAACAGGAGGACGATGGGGACGAGGACT
TCGAGCCGTCCCTCCTGGACGTCGACCTTGAAGAGGAAGAGGAGGACGAG
GAAGCTGGTGTCCGACGCCGCAACATCCAATCACGGGAGTTGAGCGACCT
CCTCCAAGACGCCTACAAGCAGTTGGGGCCCTCGATCGTCTCTCCAGGCT
TGAAGGAAAGGGTGCTCGATCAGTTATCGATGCATTTCCAGCTTCTCGTC
CAAACATCGATTCTAGCTCTGCAGGCAAGGACTTGGGGCCCTCGATCGTC
TCTCCAGGCTTGAAGGAAAGGGTGCTCGATCAGTTATCGATGCATTTCCA
GCTTCTCGTCCAAACATCGATTCTAGCTCTGCAGGCAAGGACGCAGACGT
CGGCAGACCGCTGTGATCGAGGCCGCAACATTTCCCTCGGCATGCTGGAA
CATCTCGCTTGCAGACCGAATAACGCTGCAAAAAAAGGGCAAGGGCGAAG
AACACGCGCACGGGGGAAGGCAGACGTCGGCAGACCGCTGTGATCGAGGC
CGCAACATTTCCCTCGGCATGCTGGAACATCTCGCTTGCAGACCGAATAA
CGCTGCAAAAAAAGGGCAAGGGCGAAGAACACGCGCACGGGGGAAG
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