mRNA_H-elongata_contig66733.14275.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66733.14275.1
Unique NamemRNA_H-elongata_contig66733.14275.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66733.14275.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 2.250e-91
Identity = 186/291 (63.92%), Postives = 211/291 (72.51%), Query Frame = 1 
Query:   25 CGVCGTKAGDLVCRGCVTREAERRKDERTERLKALNDIRKAAAKAINERRITVEREVRLEKETSDERRLKDQVREVTQRVAEERIMVASASFALRHQRELLAAAESHLGRETSLAVEMKPALLNGLRRHAEDAARTLRQRRWRRVVQLFVLLPVAPSFPPMND------RSTAPEGVDIGDIESVRSRQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALMDLPLPNNGDYSQVPADVLMAALALLARLVDGIASCLGVSLPHPLVPTASTRYAAVTVDSSLPER 879
            CGVC  KAGDLVC  CVTREAERR+ ER +RL AL  +R+AA  A  ER + V+ + RL+KE +DE RLKD VREV +RVAEERI VASA+FAL+H R+LLAAAESHL RE + AVEM  ALL GLRRHAEDAARTLRQRRWR+VVQLFVLLPV PS PP  +      ++        G   S    +E            XXXXXXXXXXXXXXX      S L+DLPLPNNGDYSQVPADVLMA+LAL+ARLV  +ASCLGVSLPHPL P ASTRYA ++VDSS  ER
Sbjct:   10 CGVCNAKAGDLVCGACVTREAERRRAERAKRLGALESVREAATVAAQERGVAVQHDARLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLIGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRREWPLRGKKNLGGGDHSPGTAPSTAESEEG----REVTRLPXXXXXXXXXXXXXXXEVVSGVSTLVDLPLPNNGDYSQVPADVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRER 296
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BLAST of mRNA_H-elongata_contig66733.14275.1 vs. uniprot
Match: A0A7S3GZ98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZ98_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.000e-7
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  676 SALMDLPLPNNGDYSQVPADVLMAALALLARLVDGIASCLGVSLPHPLVPTAST 837
            S+++ +PLPN+GDYS  P DV+  A A +A LVD +++ L + LPHPL+P  ST
Sbjct:   40 SSILSVPLPNSGDYSGTPVDVVAMAFAHIALLVDALSATLNIPLPHPLLPFQST 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66733.14275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT64_ECTSI2.250e-9163.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3GZ98_9STRA5.000e-750.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66733contigH-elongata_contig66733:13..2057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.4
Seed ortholog evalue9.3e-76
Seed eggNOG ortholog2880.D8LT64
EggNOG OGs2E6RT@1,2SDEH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUV radiation resistance protein/autophagy-related protein 14
Ec32 orthologEc-12_005410.1
Exons3
Model size882
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66733.14275.1prot_H-elongata_contig66733.14275.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66733 13..2057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.228319-CDS-H-elongata_contig66733:12..1731622931057.228319-CDS-H-elongata_contig66733:12..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66733 13..173 -
1691679680.3084745-CDS-H-elongata_contig66733:12..1731691679680.3084745-CDS-H-elongata_contig66733:12..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66733 13..173 -
1622931057.248599-CDS-H-elongata_contig66733:619..10691622931057.248599-CDS-H-elongata_contig66733:619..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66733 620..1069 -
1691679680.3174896-CDS-H-elongata_contig66733:619..10691691679680.3174896-CDS-H-elongata_contig66733:619..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66733 620..1069 -
1622931057.268245-CDS-H-elongata_contig66733:1786..20571622931057.268245-CDS-H-elongata_contig66733:1786..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66733 1787..2057 -
1691679680.3251681-CDS-H-elongata_contig66733:1786..20571691679680.3251681-CDS-H-elongata_contig66733:1786..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66733 1787..2057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66733.14275.1

>prot_H-elongata_contig66733.14275.1 ID=prot_H-elongata_contig66733.14275.1|Name=mRNA_H-elongata_contig66733.14275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
MPTARQSNCGVCGTKAGDLVCRGCVTREAERRKDERTERLKALNDIRKAA
AKAINERRITVEREVRLEKETSDERRLKDQVREVTQRVAEERIMVASASF
ALRHQRELLAAAESHLGRETSLAVEMKPALLNGLRRHAEDAARTLRQRRW
RRVVQLFVLLPVAPSFPPMNDRSTAPEGVDIGDIESVRSRQEAGSVGARR
KNRNGQGGIRGMGLQGASAAAVSGVSALMDLPLPNNGDYSQVPADVLMAA
LALLARLVDGIASCLGVSLPHPLVPTASTRYAAVTVDSSLPER*
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mRNA from alignment at H-elongata_contig66733:13..2057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66733.14275.1 ID=mRNA_H-elongata_contig66733.14275.1|Name=mRNA_H-elongata_contig66733.14275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2045bp|location=Sequence derived from alignment at H-elongata_contig66733:13..2057- (Himanthalia elongata Himel1 dioecious)
ATGCCGACGGCGCGCCAATCAAATTGTGGGGTTTGCGGCACCAAGGCAGG
CGACCTCGTCTGTCGTGGGTGTGTCACGCGGGAAGCGGAGCGACGAAAGG
ACGAGCGTACCGAGAGGCTCAAGGCACTGAATGATATCCGCAAGGCCGCG
GCAAAGGCGATAAACGAGCGTCGTATCACCGTTGAGAGAGAAGTGCGGCT
CGAAAAGGAAACTTCGGATGAGCGCCGCCTCAAGGATCAAGTTCGAGAGG
TCACCCAGAGGGTTGCAGAAGGTTTGGCCACGCTACCTTGGTAGCGATGA
GTGATGCCGTCGCCGGCGAGATAGAATGCCAAAATTCGCCCAGGACGCGT
CGCCATCGGTTGGGTGCCTGGAGAAAATATCATTGGAGGGGATTTGGGAC
TCTTCTTGAGATTGTAGACAGATGTACCTCGTTACGATTTTTGTTGTGGT
GTACAATTCCTCGCGCTTCGCCGCTCAAAAGCAGCGCGACCCAAGAGTCT
CTCGCGGCACTCTATCGGAATCAGTCCACCCTGCACCTACGCGCGGTTGG
CAATAATGACTACTGGTCGTTTTCTTCCTCTTCTCCCTCTTTCCTTTGCA
GTATGTGGAATGTAATCGCGCGCCAGCTGAATTGTGCGATATTTATTTAA
CCTGCGTGTCTAGTTAACCCATGGTATATCCGGTTTGGTGGAGCAAACTC
AAGGATAGTGACTAAAATATATGACCATCCTTGCGGAACGAACGTATCCT
GGCCGGCAAAAAAAACGGCACATCGCTTCGTCCCAGCATCGTTGGGATGC
GTTGTCACAACGCGCGTTTACCGTCAGTACAACCCTCCCCCTCCCCCCTT
CTTTAGAGCTCTTTGAGGGCGGCGTCGCGCCCCACGGCTATCAATGTCCC
CTATTTTTCCTCCGTCCGCCTCGTCGTCTGTTTCTGTCTTTGTCTCTGCG
TCTTGGCTTGTACGCGACCAAAACACGGGACAAGGAAGAGCGCATCATGG
TCGCGAGCGCTTCGTTCGCCTTGAGGCATCAGCGCGAGCTTCTCGCCGCC
GCCGAGTCCCACCTCGGGCGGGAAACATCCCTGGCCGTGGAAATGAAGCC
TGCGCTGCTCAACGGACTGCGGCGACACGCAGAAGACGCTGCGCGCACGC
TTAGACAGCGGCGCTGGCGTAGGGTCGTGCAGCTGTTCGTTCTTTTGCCC
GTGGCGCCGTCGTTTCCGCCGATGAACGATCGTTCCACGGCTCCAGAGGG
GGTGGATATCGGTGACATCGAAAGTGTCCGGTCGCGGCAAGAAGCAGGCA
GCGTAGGAGCCAGGCGAAAAAACAGGAACGGTCAAGGGGGAATCCGCGGG
ATGGGTCTGCAAGGGGCGTCAGCGGCTGCCGTTAGTGGTGTCAGCGCTCT
AATGGACCTCCCATTGCCAAACAATGGAGATTACAGCCGTAAGTTCCGGG
CAGATTGTTCGCGTTGGAGCTATTTTTCCTGCCGTCGAAGTTCCCATGAT
CTGATATGAATTGCAGTCTCTATTTTGTAGGCCACATCTTCCATGATTGC
GCGGTCGAAAATTTATTGGGGTTCAATCAAACAACAAGTTTGCTTTTGCG
GCCGAGGTTTTAGCTCTATGCCTCAACTCGTTACCCTACACCCTCCCAAT
TGAAGTTATCGAAAGACTCGATCTCTCGCCTTCCGCCTTCTATACCTCGA
GATTGTGTCCAAGGTAAGATTGCTTTCAGAAGATCGTGAGAGAACAATCA
ATCTGGTGTTTCCGTGACATAAATTATATCGCACGCTGCCCACCCCCCCT
TACGTGTAATGCCTCGACGTTTCTTTCCTGGTTCAAAAAACGAAATTTCA
AATCGTGGATGTTCTCCGCATCGAGCGCCGGCAGAGGTGCCTGCAGACGT
TCTCATGGCCGCGCTTGCCCTACTTGCGCGGCTCGTCGACGGCATCGCGT
CGTGTCTGGGCGTGTCGTTGCCGCACCCGCTCGTACCAACAGCGTCGACG
CGGTACGCGGCAGTCACGGTGGATTCATCGCTGCCAGAAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig66733:13..2057-

>mRNA_H-elongata_contig66733.14275.1 ID=mRNA_H-elongata_contig66733.14275.1|Name=mRNA_H-elongata_contig66733.14275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig66733:13..2057- (Himanthalia elongata Himel1 dioecious)
ATGCCGACGGCGCGCCAATCAAATTGTGGGGTTTGCGGCACCAAGGCAGG
CGACCTCGTCTGTCGTGGGTGTGTCACGCGGGAAGCGGAGCGACGAAAGG
ACGAGCGTACCGAGAGGCTCAAGGCACTGAATGATATCCGCAAGGCCGCG
GCAAAGGCGATAAACGAGCGTCGTATCACCGTTGAGAGAGAAGTGCGGCT
CGAAAAGGAAACTTCGGATGAGCGCCGCCTCAAGGATCAAGTTCGAGAGG
TCACCCAGAGGGTTGCAGAAGATGCCGACGGCGCGCCAATCAAATTGTGG
GGTTTGCGGCACCAAGGCAGGCGACCTCGTCTGTCGTGGGTGTGTCACGC
GGGAAGCGGAGCGACGAAAGGACGAGCGTACCGAGAGGCTCAAGGCACTG
AATGATATCCGCAAGGCCGCGGCAAAGGCGATAAACGAGCGTCGTATCAC
CGTTGAGAGAGAAGTGCGGCTCGAAAAGGAAACTTCGGATGAGCGCCGCC
TCAAGGATCAAGTTCGAGAGGTCACCCAGAGGGTTGCAGAAGAGCGCATC
ATGGTCGCGAGCGCTTCGTTCGCCTTGAGGCATCAGCGCGAGCTTCTCGC
CGCCGCCGAGTCCCACCTCGGGCGGGAAACATCCCTGGCCGTGGAAATGA
AGCCTGCGCTGCTCAACGGACTGCGGCGACACGCAGAAGACGCTGCGCGC
ACGCTTAGACAGCGGCGCTGGCGTAGGGTCGTGCAGCTGTTCGTTCTTTT
GCCCGTGGCGCCGTCGTTTCCGCCGATGAACGATCGTTCCACGGCTCCAG
AGGGGGTGGATATCGGTGACATCGAAAGTGTCCGGTCGCGGCAAGAAGCA
GGCAGCGTAGGAGCCAGGCGAAAAAACAGGAACGGTCAAGGGGGAATCCG
CGGGATGGGTCTGCAAGGGGCGTCAGCGGCTGCCGTTAGTGGTGTCAGCG
CTCTAATGGACCTCCCATTGCCAAACAATGGAGATTACAGCCAGCGCATC
ATGGTCGCGAGCGCTTCGTTCGCCTTGAGGCATCAGCGCGAGCTTCTCGC
CGCCGCCGAGTCCCACCTCGGGCGGGAAACATCCCTGGCCGTGGAAATGA
AGCCTGCGCTGCTCAACGGACTGCGGCGACACGCAGAAGACGCTGCGCGC
ACGCTTAGACAGCGGCGCTGGCGTAGGGTCGTGCAGCTGTTCGTTCTTTT
GCCCGTGGCGCCGTCGTTTCCGCCGATGAACGATCGTTCCACGGCTCCAG
AGGGGGTGGATATCGGTGACATCGAAAGTGTCCGGTCGCGGCAAGAAGCA
GGCAGCGTAGGAGCCAGGCGAAAAAACAGGAACGGTCAAGGGGGAATCCG
CGGGATGGGTCTGCAAGGGGCGTCAGCGGCTGCCGTTAGTGGTGTCAGCG
CTCTAATGGACCTCCCATTGCCAAACAATGGAGATTACAGCCAGGTGCCT
GCAGACGTTCTCATGGCCGCGCTTGCCCTACTTGCGCGGCTCGTCGACGG
CATCGCGTCGTGTCTGGGCGTGTCGTTGCCGCACCCGCTCGTACCAACAG
CGTCGACGCGGTACGCGGCAGTCACGGTGGATTCATCGCTGCCAGAAAGG
TGAAGGTGCCTGCAGACGTTCTCATGGCCGCGCTTGCCCTACTTGCGCGG
CTCGTCGACGGCATCGCGTCGTGTCTGGGCGTGTCGTTGCCGCACCCGCT
CGTACCAACAGCGTCGACGCGGTACGCGGCAGTCACGGTGGATTCATCGC
TGCCAGAAAGGTGA
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