mRNA_H-elongata_contig66706.14273.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI) HSP 1 Score: 137 bits (344), Expect = 1.220e-35 Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1
Query: 4 QVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
+VSLRFADA TLD VLGVVQGAVSPLAVVND EG+A LAMDK +++A E+LVHPLRNDRSVR+ AADLVK+VT CGHAP VLDFS
Sbjct: 267 KVSLRFADAATLDSVLGVVQGAVSPLAVVNDVEGVARLAMDKSVMEAEEVLVHPLRNDRSVRIKAADLVKYVTACGHAPTVLDFS 351
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A835YT63_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT63_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.520e-21 Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 10 SLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
+LRFAD ETL +LGV QG+V PLAV+ND+EG AT +DK L A + HPLRNDR+ ++A DL+ + C H P +LDF+
Sbjct: 275 NLRFADEETLSAILGVKQGSVGPLAVLNDTEGQATFVLDKKLAQADIINSHPLRNDRTTAVSAKDLIAYANACNHPPTILDFA 357
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A2E4H0N0_9PROT (tRNA_edit domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4H0N0_9PROT) HSP 1 Score: 85.9 bits (211), Expect = 3.030e-19 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 1 SQVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
+Q +L F +E+L+++LGVV GAV+PL+V+ND T +DK+L+DA + HPLRND + L+A DL+ F+ H+P +LDFS
Sbjct: 83 AQGTLSFGSSESLNELLGVVPGAVTPLSVINDKGSAVTAFIDKELLDADLVNAHPLRNDMTTALSARDLITFMETVHHSPNILDFS 168
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A1V9YDF7_9STRA (Proline--tRNA ligase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YDF7_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.720e-18 Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 1 SQVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
++V+LRFA + L L V QG+VSPLAV+ND+EG L +D+ L+ A ++ HPL+ND++V L ADL+KFV GH P ++DFS
Sbjct: 79 NKVNLRFASEDVLHDTLKVKQGSVSPLAVMNDTEGQVKLVLDETLLKAEKINCHPLQNDKTVSLTPADLLKFVRHYGHEPLIVDFS 164
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A7S3ANH3_9EUKA (Proline--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANH3_9EUKA) HSP 1 Score: 86.7 bits (213), Expect = 5.990e-18 Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 10 SLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
+ RFA AE L ++LGV QG+VSPLAV+ND+ G TL +DK+L+ A+ + VHPLRND + +++ DL KFV+ H KV+DF
Sbjct: 88 NFRFATAEVLQELLGVQQGSVSPLAVMNDTTGAVTLCIDKELMQANYVGVHPLRNDMTNQISPDDLTKFVSHFKHDAKVIDF 169
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: W7TR23_9STRA (Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR23_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.190e-18 Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 4 QVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
+ +LRFAD ETL+ +L V +GAVS LAV+ND+ TLAMDK L++ + +HPLRNDR+V + A L++FV GH P +LDF
Sbjct: 114 KANLRFADEETLEGLLKVKRGAVSALAVLNDTGNAVTLAMDKALMEQPIVNLHPLRNDRTVAIPTAALLQFVHAAGHEPTMLDF 197
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A0F5PUX7_9HYPH (Ala-tRNA(Pro) hydrolase n=1 Tax=Devosia psychrophila TaxID=728005 RepID=A0A0F5PUX7_9HYPH) HSP 1 Score: 82.0 bits (201), Expect = 9.190e-18 Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
FA +ETL + LGV+QG+VSPLA++ND+ L + KD++ + VHPL N +V L + +LVKFVT GH+P ++DF
Sbjct: 85 FASSETLLEALGVIQGSVSPLALINDTANAVQLVLAKDMLAQPRITVHPLVNTATVSLTSDELVKFVTATGHSPDIVDF 163
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: UPI0015F3C2C6 (prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Aureimonas sp. ME7 TaxID=2744252 RepID=UPI0015F3C2C6) HSP 1 Score: 80.5 bits (197), Expect = 3.660e-17 Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
FA AETL + LGVVQG+VSPLA+VND +L +DK ++ L VHPLRN +V L +ADL++ V GH +++DF
Sbjct: 84 FASAETLLEALGVVQGSVSPLALVNDKAKAVSLVLDKRMLSHPRLTVHPLRNTATVSLASADLLRVVEATGHEAQIVDF 162
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A6N6TGD3_9GAMM (Prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Candidatus Contendobacter sp. TaxID=2651161 RepID=A0A6N6TGD3_9GAMM) HSP 1 Score: 79.7 bits (195), Expect = 6.520e-17 Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVL 249
FA+ E L ++LGVV GAVSP A +ND++G A + +D+ ++DA L HPL+NDR+ + DL++F+ GH P+++
Sbjct: 84 FANEEELGRILGVVPGAVSPFAAINDADGRACIVLDRRVLDADLLNCHPLQNDRTTTIATGDLLRFLEAVGHPPRII 160
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A433I4J6_9GAMM (Prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A433I4J6_9GAMM) HSP 1 Score: 77.8 bits (190), Expect = 3.670e-16 Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVL 249
FA+AE LD++LGV GAVSP A VND EG + +++ ++D L HPLRNDR+ + +L++F+ GH P+++
Sbjct: 84 FANAEALDRLLGVQPGAVSPFAAVNDVEGQVCVVLEQQVLDTERLNCHPLRNDRTTTIATTELLRFLDQIGHPPRII 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66706.14273.1 >prot_H-elongata_contig66706.14273.1 ID=prot_H-elongata_contig66706.14273.1|Name=mRNA_H-elongata_contig66706.14273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp SQVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASEback to top mRNA from alignment at H-elongata_contig66706:1310..2329+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66706.14273.1 ID=mRNA_H-elongata_contig66706.14273.1|Name=mRNA_H-elongata_contig66706.14273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-elongata_contig66706:1310..2329+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66706:1310..2329+ >mRNA_H-elongata_contig66706.14273.1 ID=mRNA_H-elongata_contig66706.14273.1|Name=mRNA_H-elongata_contig66706.14273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig66706:1310..2329+ (Himanthalia elongata Himel1 dioecious)back to top |