mRNA_H-elongata_contig66691.14272.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66691.14272.1
Unique NamemRNA_H-elongata_contig66691.14272.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66691.14272.1 vs. uniprot
Match: A0A6P4Q2V2_GOSAR (uncharacterized protein LOC108485355 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4Q2V2_GOSAR)

HSP 1 Score: 57.0 bits (136), Expect = 1.810e-6
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    1 KSWIFDSGSSGHMTPNADQLRNL-RTCNRFLRVANGTQLPIEGYGDLTVDCRSGQGVVRVELINGAYVPCLSYHLLSLPTFAKQGYS 258
            K W+FDSG + HM+P+A   + L R+C   +++ +G  +  EG GD+ +   SG  ++     N  +VP +  +LLS+    K+GY+
Sbjct:  189 KGWLFDSGCTNHMSPDATIFKTLDRSCKTRVKIGDGHCIQAEGIGDVIICTPSGNKLIP----NVLFVPEIDRNLLSIAQLLKKGYT 271
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BLAST of mRNA_H-elongata_contig66691.14272.1 vs. uniprot
Match: A0A6A4ZGC5_9STRA (DDE-1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGC5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.010e-5
Identity = 31/82 (37.80%), Postives = 41/82 (50.00%), Query Frame = 1 
Query:    7 WIFDSGSSGHMTPNADQLRNLRTCNRFLRVANGTQLPIEGYGDLTV----DCRSGQGVVR---VELINGAYVPCLSYHLLSL 231
            WI DSG+S   TPN D   N   C   L V NG QLP+ GYG L++      R     +R   + L  G + P L ++L S+
Sbjct:  567 WIVDSGASASCTPNRDYFSNYVPCALSLTVGNGAQLPVLGYGPLSLAVDMSSRDQADDIRPCALRLTFGLHCPELQFNLFSV 648
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66691.14272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6P4Q2V2_GOSAR1.810e-633.33uncharacterized protein LOC108485355 n=1 Tax=Gossy... [more]
A0A6A4ZGC5_9STRA8.010e-537.80DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66691contigH-elongata_contig66691:2806..3348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue7.3e-07
Seed eggNOG ortholog67593.Physo143243
KEGG koko:K04911
KEGG TC1.A.1.20
EggNOG free text desc.DNA binding
EggNOG OGs3Q9XS@4776,COG2801@1,KOG0017@2759,KOG3105@1,KOG3105@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.0052533-CDS-H-elongata_contig66691:2805..33481622931057.0052533-CDS-H-elongata_contig66691:2805..3348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66691 2806..3348 +
1691679680.2400556-CDS-H-elongata_contig66691:2805..33481691679680.2400556-CDS-H-elongata_contig66691:2805..3348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66691 2806..3348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66691.14272.1prot_H-elongata_contig66691.14272.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66691 2806..3348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66691.14272.1

>prot_H-elongata_contig66691.14272.1 ID=prot_H-elongata_contig66691.14272.1|Name=mRNA_H-elongata_contig66691.14272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
KSWIFDSGSSGHMTPNADQLRNLRTCNRFLRVANGTQLPIEGYGDLTVDC
RSGQGVVRVELINGAYVPCLSYHLLSLPTFAKQGYSFFGDCRGIHLNLRS
GKKVLAPFVGNLNLQFGIRIDSDEKKACATLAPGLMPTTDVGINAYHRST
AHTHPRILLYSAKQQGVTFKKGVKLQPCVGC
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mRNA from alignment at H-elongata_contig66691:2806..3348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66691.14272.1 ID=mRNA_H-elongata_contig66691.14272.1|Name=mRNA_H-elongata_contig66691.14272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig66691:2806..3348+ (Himanthalia elongata Himel1 dioecious)
AAGAGTTGGATCTTCGACAGCGGGTCGTCTGGTCATATGACACCCAACGC
TGATCAATTGAGGAATCTCCGCACTTGCAACAGATTTCTGCGTGTAGCTA
ATGGTACGCAACTCCCGATTGAGGGCTACGGCGATCTCACCGTTGACTGC
CGATCCGGCCAGGGCGTTGTGCGTGTAGAGCTGATAAACGGAGCCTACGT
ACCTTGCCTTAGCTACCACCTTCTCTCGCTCCCTACTTTCGCAAAGCAAG
GTTACTCCTTCTTTGGCGATTGTAGGGGTATTCATTTGAACCTCCGATCT
GGCAAAAAAGTGCTTGCGCCCTTCGTCGGAAACTTGAACCTTCAATTTGG
TATTCGAATTGATAGTGATGAGAAGAAAGCTTGCGCAACCCTTGCCCCCG
GTCTTATGCCCACTACCGATGTAGGCATTAACGCCTACCATCGGTCGACT
GCCCACACCCACCCTCGGATACTGCTGTACTCCGCCAAGCAACAAGGTGT
GACGTTCAAGAAGGGAGTCAAGCTGCAGCCATGCGTGGGATGC
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Coding sequence (CDS) from alignment at H-elongata_contig66691:2806..3348+

>mRNA_H-elongata_contig66691.14272.1 ID=mRNA_H-elongata_contig66691.14272.1|Name=mRNA_H-elongata_contig66691.14272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig66691:2806..3348+ (Himanthalia elongata Himel1 dioecious)
AAGAGTTGGATCTTCGACAGCGGGTCGTCTGGTCATATGACACCCAACGC
TGATCAATTGAGGAATCTCCGCACTTGCAACAGATTTCTGCGTGTAGCTA
ATGGTACGCAACTCCCGATTGAGGGCTACGGCGATCTCACCGTTGACTGC
CGATCCGGCCAGGGCGTTGTGCGTGTAGAGCTGATAAACGGAGCCTACGT
ACCTTGCCTTAGCTACCACCTTCTCTCGCTCCCTACTTTCGCAAAGCAAG
GTTACTCCTTCTTTGGCGATTGTAGGGGTATTCATTTGAACCTCCGATCT
GGCAAAAAAGTGCTTGCGCCCTTCGTCGGAAACTTGAACCTTCAATTTGG
TATTCGAATTGATAGTGATGAGAAGAAAGCTTGCGCAACCCTTGCCCCCG
GTCTTATGCCCACTACCGATGTAGGCATTAACGCCTACCATCGGTCGACT
GCCCACACCCACCCTCGGATACTGCTGTACTCCGCCAAGCAACAAGGTGT
GACGTTCAAGAAGGGAGTCAAGCTGCAGCCATGCGTGGGATGCAAGAGTT
GGATCTTCGACAGCGGGTCGTCTGGTCATATGACACCCAACGCTGATCAA
TTGAGGAATCTCCGCACTTGCAACAGATTTCTGCGTGTAGCTAATGGTAC
GCAACTCCCGATTGAGGGCTACGGCGATCTCACCGTTGACTGCCGATCCG
GCCAGGGCGTTGTGCGTGTAGAGCTGATAAACGGAGCCTACGTACCTTGC
CTTAGCTACCACCTTCTCTCGCTCCCTACTTTCGCAAAGCAAGGTTACTC
CTTCTTTGGCGATTGTAGGGGTATTCATTTGAACCTCCGATCTGGCAAAA
AAGTGCTTGCGCCCTTCGTCGGAAACTTGAACCTTCAATTTGGTATTCGA
ATTGATAGTGATGAGAAGAAAGCTTGCGCAACCCTTGCCCCCGGTCTTAT
GCCCACTACCGATGTAGGCATTAACGCCTACCATCGGTCGACTGCCCACA
CCCACCCTCGGATACTGCTGTACTCCGCCAAGCAACAAGGTGTGACGTTC
AAGAAGGGAGTCAAGCTGCAGCCATGCGTGGGATGC
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