mRNA_H-elongata_contig66597.14265.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66597.14265.1
Unique NamemRNA_H-elongata_contig66597.14265.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: A0A6H5KZD4_9PHAE (DUF4201 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-15
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENGV 183
            LIDFEQLKIENQTV+EKIEE+ +ELLKL+KK+TTTVQ      ILTHT+EKLQ +AAEN V
Sbjct: 1030 LIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQ------ILTHTKEKLQFVAAENSV 1084
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: A0A7S3D8H4_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D8H4_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 3.260e-14
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENGV 183
            +IDFEQLKIENQT++EKIEE+ +ELLKL+KK TTTVQ      +LTH +EKLQ +AAEN V
Sbjct:   85 VIDFEQLKIENQTLNEKIEERNEELLKLRKKTTTTVQ------VLTHLKEKLQFVAAENKV 139
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: A0A7S3VT03_DUNTE (Hypothetical protein n=3 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VT03_DUNTE)

HSP 1 Score: 72.8 bits (177), Expect = 1.590e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENG 180
            LIDFEQLKIENQ+++EKIEE+ +ELLKL+KK TTTVQ      ILTH REKLQC+  EN 
Sbjct:  373 LIDFEQLKIENQSLNEKIEERNEELLKLRKKTTTTVQ------ILTHVREKLQCVEKENN 426
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: A0A7S0E726_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E726_9CRYP)

HSP 1 Score: 69.7 bits (169), Expect = 4.030e-13
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAEN 177
            LIDFEQLKIENQT++EKIEE+ +ELLKL+KK TTTVQ      +LTH +EKLQ + AEN
Sbjct:   56 LIDFEQLKIENQTLNEKIEERNEELLKLRKKTTTTVQ------VLTHLKEKLQFVQAEN 108
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: A0A7S3D8P2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D8P2_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 4.070e-13
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENGV 183
            +IDFEQLKIENQT++EKIEE+ +ELLKL+KK TTTVQ      +LTH +EKLQ +AAEN V
Sbjct:  530 VIDFEQLKIENQTLNEKIEERNEELLKLRKKTTTTVQ------VLTHLKEKLQFVAAENKV 584
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: A0A7S0Z123_9CRYP (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0Z123_9CRYP)

HSP 1 Score: 69.7 bits (169), Expect = 4.570e-13
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAEN 177
            LIDFEQLKIENQT++EKIEE+ +ELLKL+KK TTTVQ      +LTH +EKLQ + AEN
Sbjct:   63 LIDFEQLKIENQTLNEKIEERNEELLKLRKKTTTTVQ------VLTHLKEKLQFVQAEN 115
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: UPI00109B9FF2 (coiled-coil domain-containing protein 96 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B9FF2)

HSP 1 Score: 71.2 bits (173), Expect = 5.520e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENG 180
            LIDFEQLKIENQT +EKIEE+ +ELLKL+KK TTTVQ      +LTH +EKLQ + AENG
Sbjct:  356 LIDFEQLKIENQTYNEKIEERNEELLKLRKKITTTVQ------VLTHLKEKLQFVQAENG 409
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: UPI00138FDAA5 (coiled-coil domain-containing protein 96 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FDAA5)

HSP 1 Score: 71.2 bits (173), Expect = 5.540e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENG 180
            LIDFEQLKIENQT +EKIEE+ +ELLKL+KK TTTVQ      +LTH +EKLQ + AENG
Sbjct:  406 LIDFEQLKIENQTYNEKIEERNEELLKLRKKITTTVQ------VLTHLKEKLQFVQAENG 459
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: I7M6D6_TETTS (DUF4201 domain-containing protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M6D6_TETTS)

HSP 1 Score: 71.2 bits (173), Expect = 5.580e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENG 180
            LIDFEQLKIENQT++EKIEE+ +EL KLKKK+TTT+Q      ILTHTREKL  +  ENG
Sbjct:  635 LIDFEQLKIENQTLNEKIEERNEELHKLKKKNTTTIQ------ILTHTREKLGFVQGENG 688
[Close]
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Match: A0A7S4MHU1_9EUKA (Hypothetical protein n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MHU1_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 5.780e-13
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTREKLQCIAAENGV 183
            LIDFEQLKIENQT++EKIEE+ +ELLKL+KK TTTVQ      +LTH +EKLQ + AEN V
Sbjct:  191 LIDFEQLKIENQTLNEKIEERNEELLKLRKKTTTTVQ------VLTHLKEKLQFVQAENQV 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66597.14265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZD4_9PHAE1.490e-1573.77DUF4201 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S3D8H4_9EUKA3.260e-1467.21Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3VT03_DUNTE1.590e-1368.33Hypothetical protein n=3 Tax=Dunaliella tertiolect... [more]
A0A7S0E726_9CRYP4.030e-1367.80Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3D8P2_9EUKA4.070e-1367.21Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S0Z123_9CRYP4.570e-1367.80Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
UPI00109B9FF25.520e-1368.33coiled-coil domain-containing protein 96 n=1 Tax=E... [more]
UPI00138FDAA55.540e-1368.33coiled-coil domain-containing protein 96 n=2 Tax=N... [more]
I7M6D6_TETTS5.580e-1368.33DUF4201 domain-containing protein n=1 Tax=Tetrahym... [more]
A0A7S4MHU1_9EUKA5.780e-1367.21Hypothetical protein n=2 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66597contigH-elongata_contig66597:1..382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue8.8e-13
Seed eggNOG ortholog2880.D7FPR3
Preferred nameCCDC96
EggNOG free text desc.Domain of unknown function (DUF4201)
EggNOG OGs28MPJ@1,2QS75@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931056.1150794-CDS-H-elongata_contig66597:0..1291622931056.1150794-CDS-H-elongata_contig66597:0..129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66597 1..129 +
1691679679.9980528-CDS-H-elongata_contig66597:0..1291691679679.9980528-CDS-H-elongata_contig66597:0..129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66597 1..129 +
1622931056.1301546-CDS-H-elongata_contig66597:328..3821622931056.1301546-CDS-H-elongata_contig66597:328..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66597 329..382 +
1691679680.0102448-CDS-H-elongata_contig66597:328..3821691679680.0102448-CDS-H-elongata_contig66597:328..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66597 329..382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66597.14265.1prot_H-elongata_contig66597.14265.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66597 1..382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66597.14265.1

>prot_H-elongata_contig66597.14265.1 ID=prot_H-elongata_contig66597.14265.1|Name=mRNA_H-elongata_contig66597.14265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
LIDFEQLKIENQTVSEKIEEKKQELLKLKKKHTTTVQARDAQRILTHTRE
KLQCIAAENGV
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mRNA from alignment at H-elongata_contig66597:1..382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66597.14265.1 ID=mRNA_H-elongata_contig66597.14265.1|Name=mRNA_H-elongata_contig66597.14265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=382bp|location=Sequence derived from alignment at H-elongata_contig66597:1..382+ (Himanthalia elongata Himel1 dioecious)
TTAATCGACTTCGAGCAGCTCAAGATCGAGAATCAAACAGTAAGCGAAAA
GATCGAGGAAAAAAAACAGGAGCTGCTTAAGCTCAAAAAGAAACACACGA
CCACGGTCCAGGCGAGAGATGCCCAACGGGTCTATTTACCGCTTGATCAA
AGAAATGTCAATCTTCCTACTGGTTATCGTAAGAAAGGTATAGATATATA
GACAAGGGAGCAATCGCGAAATCCGCATCCCAGTAGTAATACCGCAAATT
TCCTGTCGATACGCACGACGGACCGTTCGTTCGTGTGTCATGACGATTCT
GCATTATTGTTATCGTGGTGCTGTACAGATTCTGACTCATACCAGGGAGA
AGCTTCAGTGTATTGCAGCTGAGAATGGTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig66597:1..382+

>mRNA_H-elongata_contig66597.14265.1 ID=mRNA_H-elongata_contig66597.14265.1|Name=mRNA_H-elongata_contig66597.14265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig66597:1..382+ (Himanthalia elongata Himel1 dioecious)
TTAATCGACTTCGAGCAGCTCAAGATCGAGAATCAAACAGTAAGCGAAAA
GATCGAGGAAAAAAAACAGGAGCTGCTTAAGCTCAAAAAGAAACACACGA
CCACGGTCCAGGCGAGAGATGCCCAACGGTTAATCGACTTCGAGCAGCTC
AAGATCGAGAATCAAACAGTAAGCGAAAAGATCGAGGAAAAAAAACAGGA
GCTGCTTAAGCTCAAAAAGAAACACACGACCACGGTCCAGGCGAGAGATG
CCCAACGGATTCTGACTCATACCAGGGAGAAGCTTCAGTGTATTGCAGCT
GAGAATGGTGTCATTCTGACTCATACCAGGGAGAAGCTTCAGTGTATTGC
AGCTGAGAATGGTGTC
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