mRNA_H-elongata_contig66549.14257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66549.14257.1
Unique NamemRNA_H-elongata_contig66549.14257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66549.14257.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.730e-15
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:  269 GEDGRESGEDTSSTSGGHGRDPQTGEGMWIDDEDEPLVLEKPKKIQKFCGKVVSDKMDKSITVLDCYRSY 478
            GE G E  +    +SG + RDP TGEG+W+D+EDEPL LEKPKK+QKFCGKV+SD MDK+I V   Y  Y
Sbjct:   97 GEGGGEGQQGEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYY 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66549.14257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ53_ECTSI7.730e-1560.00Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66549contigH-elongata_contig66549:724..2616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-02_006320.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1129
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66549.14257.1prot_H-elongata_contig66549.14257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66549 1385..2396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.257662-UTR-H-elongata_contig66549:723..9591622931055.257662-UTR-H-elongata_contig66549:723..959Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66549 724..959 -
1691679679.5905256-UTR-H-elongata_contig66549:723..9591691679679.5905256-UTR-H-elongata_contig66549:723..959Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66549 724..959 -
1622931055.2704666-UTR-H-elongata_contig66549:975..13841622931055.2704666-UTR-H-elongata_contig66549:975..1384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66549 976..1384 -
1691679679.603835-UTR-H-elongata_contig66549:975..13841691679679.603835-UTR-H-elongata_contig66549:975..1384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66549 976..1384 -
1622931055.316513-UTR-H-elongata_contig66549:2396..26161622931055.316513-UTR-H-elongata_contig66549:2396..2616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66549 2397..2616 -
1691679679.6343257-UTR-H-elongata_contig66549:2396..26161691679679.6343257-UTR-H-elongata_contig66549:2396..2616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66549 2397..2616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.2848446-CDS-H-elongata_contig66549:1384..14951622931055.2848446-CDS-H-elongata_contig66549:1384..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66549 1385..1495 -
1691679679.6131015-CDS-H-elongata_contig66549:1384..14951691679679.6131015-CDS-H-elongata_contig66549:1384..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66549 1385..1495 -
1622931055.297809-CDS-H-elongata_contig66549:2243..23961622931055.297809-CDS-H-elongata_contig66549:2243..2396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66549 2244..2396 -
1691679679.6233175-CDS-H-elongata_contig66549:2243..23961691679679.6233175-CDS-H-elongata_contig66549:2243..2396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66549 2244..2396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66549.14257.1

>prot_H-elongata_contig66549.14257.1 ID=prot_H-elongata_contig66549.14257.1|Name=mRNA_H-elongata_contig66549.14257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MCSASNRSKPTGDQPRGEDGRESGEDTSSTSGGHGRDPQTGEGMWIDDED
EPLVLEKPKKIQKFCGKVVSDKMDKSITVLDCYRSYF*
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mRNA from alignment at H-elongata_contig66549:724..2616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66549.14257.1 ID=mRNA_H-elongata_contig66549.14257.1|Name=mRNA_H-elongata_contig66549.14257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-elongata_contig66549:724..2616- (Himanthalia elongata Himel1 dioecious)
AATTGCCTTGTCTTCCGTCTCTGGAAGGGTTGCGGTTGCCAGAAGGACAC
TGGCGCCAGCGATCGCTCGCCGCACAACCCTTGCTGCTTTTGGACCCTCC
TGCCGAGCCGGACACGATGCCACCTCTGCCGACCGCGCCAGCACTGTCCC
TGTAGCTGCTCTTGATGTTTCTTCGTCTCTCGTCAGATTTCCTCAACAAA
AGCAGCGCTTCTGCCGGAGTATGTGTTCGGCAAGCAATCGTTCAAAGCCG
ACCGGCGACCAGCCGCGAGGGGAAGACGGGAGGGAGAGTGGGGAGGATAC
GAGCAGCACCAGCGGGGGGCACGGTAGGGATCCACAGACAGGGGAGGGGA
TGTGGATCGATGATGAGGACGAGGTATGTTCATTTTCCATCGAATGTTAG
TTGTCGCCCTAGACGTGCAGAGAGAGAGAGAGAGAGAGAGAGATTTCTGT
AGTCTGATACGAAGGTTTTGATCTCGAAATCATCAGCCCATTCGGTGCTT
CTAGAACCAATGTGCCAATATTACCGGTATAGTAGGAAGAAGCTGGCCCG
ATTAATTTATCGTAGATCTATGAAAGGGGATTGACCACCCAATGAACACG
TGCTTCATTCGTGGAGCAGATTGTCGTTAAGCACCATGTAGAGTATTTCT
CGTACTCTCGAAGCCACTCGTTGCTCCGCAGCTCTTGGCTTGTAGACTGC
GAGAACCGCGCAAGACAGTGGCAGCCTAGCCGAGCTCCTGCGGTAGGAAC
TACGCATTTTTATTTTAAAACATATGAACTCATTCAAACCCTTCGAACAT
CCGCACCTTCTTAACTATGCGAGGTGTAGTCCAGGGGACCGTTATACCTT
GCCGCCCGATCAGCATGACGAAACCTTCGGGAGGCTTGAATGGTGTACCG
AATACTGTAATATAGTATCGGATCGTAGGTTCGGGTACCACGCCTACCGA
ACCAAAAATGTGGAGAGTGGACCATGGGGAACACTCTGTCGTACCGCGGC
GCGTGTCAAAACTATACTGCTGTTGACGAAGTATCACAAACACGGACAGT
TTCAACGCGCGCTCGTTCCCTTCCGTCCTTGTATCCCCTGACACGCTCTT
ATGGGGGGGGAAACGCCTCAGCCGTTAGTGCTAGAGAAGCCGAAGAAGAT
TCAGAAGTTCTGCGGGAAAGTGGTTTCGGACAAGATGGACAAAAGCATCA
CGGTACTTGACTGCTATCGTTCGTATTTTTAGTGAAAATGTTTTTTTTCT
GAACGTAGTAAATCCCTCTTTGTCCCGACACAATCCGCCGCGGTGCGCGG
TCTTTCGCCTCGCTCGGAGGAAATATTTTCCAGCGGGTGGGGAAAGGTGG
GGACACGTACTCAAGTTTTTTACGTCTTTATCTGTTGAACGATTGGGCAG
ACTTCCGATATTTTCCCCGTGTTTTTCTCCGCGGCGTCGCGACTAGTCAC
TGTCAAACAATTCGGTGTTGTTGAAATCTTGCGGACGGCTCTTCAAAACG
TTACTTTCCCACGGCAGTACTACCCACTGCATTTGGGAGAAAATGAGAGG
AGGGAGAGGGGTTGTTAACGGGGAGCGTCCTTTTTCTAACATCACGTTAC
TTTATCAGCAAACGTCTACGTTCTAACTTGGTAATAAGAGCGTGTACGGC
GTCAAAGTAAGCCTAGAGCTGCTTTACGCATTCCGCGGTACGCTGTGGCG
GTTAGAGCTCTTCCCCGGTGCGGCGCTGACAAGCGCGGAACTAGGCGCGA
ACCTGGGTGCGGTGGAGGTTCCGACACGTCTTGACGACAAACACGGCCCG
GTCGGGTCCCCGTATCATAAACATCCCGCGGAATCCAGTGGCACTGATTT
ATAGAGGGAAAAAAACGCTTGAAACGCTGATAGATCACCTTGC
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Coding sequence (CDS) from alignment at H-elongata_contig66549:724..2616-

>mRNA_H-elongata_contig66549.14257.1 ID=mRNA_H-elongata_contig66549.14257.1|Name=mRNA_H-elongata_contig66549.14257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig66549:724..2616- (Himanthalia elongata Himel1 dioecious)
ATGTGTTCGGCAAGCAATCGTTCAAAGCCGACCGGCGACCAGCCGCGAGG
GGAAGACGGGAGGGAGAGTGGGGAGGATACGAGCAGCACCAGCGGGGGGC
ACGGTAGGGATCCACAGACAGGGGAGGGGATGTGGATCGATGATGAGGAC
GAGATGTGTTCGGCAAGCAATCGTTCAAAGCCGACCGGCGACCAGCCGCG
AGGGGAAGACGGGAGGGAGAGTGGGGAGGATACGAGCAGCACCAGCGGGG
GGCACGGTAGGGATCCACAGACAGGGGAGGGGATGTGGATCGATGATGAG
GACGAGCCGTTAGTGCTAGAGAAGCCGAAGAAGATTCAGAAGTTCTGCGG
GAAAGTGGTTTCGGACAAGATGGACAAAAGCATCACGGTACTTGACTGCT
ATCGTTCGTATTTTTAGCCGTTAGTGCTAGAGAAGCCGAAGAAGATTCAG
AAGTTCTGCGGGAAAGTGGTTTCGGACAAGATGGACAAAAGCATCACGGT
ACTTGACTGCTATCGTTCGTATTTTTAG
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