mRNA_H-elongata_contig66528.14251.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 268 bits (684), Expect = 1.790e-79 Identity = 139/227 (61.23%), Postives = 169/227 (74.45%), Query Frame = 1
Query: 4 VQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
VQHPDS+ LLT I+ AW+ HY RLA DVTGNS+ +KW W QR RH+T LD EEMV AL R+KRHK PG+DG+PAD +LA G+E SPMGK +L ++NL+W +VIP ESTVV IPKKG++TDMN++RGISLM T LKVL+++IS RL++A ER +LFS +QAGFR +EEC TQ ACLLEI + RK R K +YL FVDLKKAYDTVP EAL
Sbjct: 441 VQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQR-RHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEAL 666
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A2R5FJC4_9STRA (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FJC4_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.160e-46 Identity = 85/194 (43.81%), Postives = 128/194 (65.98%), Query Frame = 1
Query: 1 SVQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAI-GDEIS--PMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVA 573
+++ PDS LL E IA AW HYGRLA D TG+S+ + W + P+++ I GL+ + EE+ A+ +K ++ PG DG+PA++++L + G E + P KA+ V+N ++ +P+ W STVVSIPKKG+L DMN+YRGISLM T LK++M +++ R+ A E + +++ Q GFRR+EECA QVA
Sbjct: 189 ALRDPDSGELLLEAPEIAGAWATHYGRLAADATGHSRDDDHWAQLWPEAEEREEIEGLNDWISREEIASAILGMKNNRAPGDDGVPAELWRLLVRGAEATEAPAMKAIENVINALFFKAFVPECWCTSTVVSIPKKGDLEDMNNYRGISLMSTFLKIIMRVVARRIDRAFETQSMWAREQGGFRRREECAAQVA 382
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG) HSP 1 Score: 171 bits (434), Expect = 2.050e-45 Identity = 91/211 (43.13%), Postives = 124/211 (58.77%), Query Frame = 1
Query: 52 AEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
+EAW H+ LA+D TGNS+S KW S+ + T D + TW E+ AL +K PGSDGIP++V+KL +E SP K +VN +W + IP S +V IPKKG++ D N+YRGISL+ T KVL +I+ RLS + + QAGFR +EEC Q L E+ + RKI G +++ F+D KAYD VPH+AL
Sbjct: 1037 SEAWAAHFEELAKDSTGNSRSAEKWSNMGLGSEAV--YTECDAILTWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQAL 1245
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A498SLY1_ACAVI (Reverse transcriptase domain-containing protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SLY1_ACAVI) HSP 1 Score: 168 bits (426), Expect = 6.160e-45 Identity = 89/216 (41.20%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 49 IAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGD------EISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
IAE W+ HY L ED TG+SK+ W ++ + ++ ++ F+W E+V A+ L +K G DGIPA+ +KL D + +GK L ++ +WV IP+ W + ++SIPKKG+LT ++YRGISL+ K+L ++S R+S +E + QAGFR++EEC QV L+E + RK +G+P+YLAF+D KKAYD V HEAL
Sbjct: 314 IAEVWREHYRNLFEDSTGHSKNKEYWSKFPIHIRSTVELS--NIPFSWSEIVLAVRSLSTNKAAGPDGIPAEFFKLINNDMDTGLAPCTKLGKFLFSIFEKVWVSGKIPNSWNLAKIISIPKKGDLTITDNYRGISLIPVISKILSKMLSSRISYHLESNGIICKEQAGFRKREECLGQVIALVEAIQRRKHKGEPTYLAFIDFKKAYDMVAHEAL 527
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG) HSP 1 Score: 168 bits (425), Expect = 3.060e-44 Identity = 92/222 (41.44%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 19 SKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
S+ L+T+ AE W H+ LA D TGNS+S KWR S + T D +W E+ AL +K PGSDGIP++ +KL ++ SP K LL ++N +W + IP S VV IPKKG++ + N+YRGISL+ T KV+ +IS RL + + + QAGFR +EEC Q L E+ + RKI G +++ F+D KAYD VPH+AL
Sbjct: 402 SRQLVTDSETKAEVWAAHFEELARDSTGNSRSAEKWRDIGSDSTEV--FTECDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQAL 621
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM) HSP 1 Score: 167 bits (424), Expect = 4.390e-44 Identity = 96/244 (39.34%), Postives = 137/244 (56.15%), Query Frame = 1
Query: 4 VQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDEI---------------SPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPK-KGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERE---RLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
++HP SK +LT+ IA+AW +++G LAED TG+ W R L + GL+ W+E+ AL +K K PG DG+ AD KL G + +PM L ++ MW + +P VW + VV I K +G+ +M +YRGISL+ LK+L +I+ RL++ ++ + RL QAGFR +EEC + L E+ + R+I PSYLAF+DLKKAYDTVPH AL
Sbjct: 618 IKHPHSKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNPMAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKE-QAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGAL 860
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG) HSP 1 Score: 167 bits (423), Expect = 5.900e-44 Identity = 88/220 (40.00%), Postives = 131/220 (59.55%), Query Frame = 1
Query: 28 LLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDEI---SPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
L+T+ AE W H+ +LA+D TGNS+S +KW+ + D +W E+ AL +K PGSDGIP++V+KL + +EI SP+ K + ++N +W + +P S VV IPKKG++ D N+YRGISL+ T KV+ +++ RL A + + + QAGFR +EEC Q L E+ + RKI G +++ F+D KAYD VPH+AL
Sbjct: 582 LITDTDAKAEVWATHFEKLAKDSTGNSRSADKWKNMGTIAAVFPEC---DAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKL-VQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQAL 797
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG) HSP 1 Score: 166 bits (420), Expect = 1.430e-43 Identity = 89/219 (40.64%), Postives = 126/219 (57.53%), Query Frame = 1
Query: 28 LLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
L+T+ AE W H+ LA+D TGNS+S KWR T D +W E+ AL +K PGSDGIP++V+K+ ++ SP+ K +L ++ +W + IP S V+ IPKKG++ D N+YRGISL+ T KVL +I+ RL + + + QAGFR +EEC Q L E+ + RKI G +++ F+D KAYD VPHEAL
Sbjct: 343 LITDSEAKAEVWASHFEELAKDSTGNSRSAKKWR--DIGKNYTAEFTECDTPLSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEAL 559
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R0GS88_9FUNG (LINE-1 reverse transcriptase-like protein n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GS88_9FUNG) HSP 1 Score: 162 bits (411), Expect = 1.820e-43 Identity = 87/222 (39.19%), Postives = 129/222 (58.11%), Query Frame = 1
Query: 22 KILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDEISP---MGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 678
K L+ + + W+ H+ LA D TGNS++ +KW + D W E+ AL + +K G+DGIP +V+KL I EISP M K + ++ +W IP++ S VV +PKKGNL+D N+YRGISL+ T +K+L +++ +LSA E+ ++ + Q GFR +EEC +Q L EI K RK+ G +++ F+D KAYD VPH AL
Sbjct: 265 KNLIVDSESRLKVWENHFKNLATDTTGNSRTADKWEPMLDYD--IESFPECDEPIKWSEITTALKEIPNNKASGTDGIPNEVWKL-IKSEISPTSKMAKIVFKILKSIWDTGNIPEIMSTSIVVPVPKKGNLSDPNNYRGISLIPTFIKILAKVLANKLSAISEKYKIIAKEQGGFRTREECVSQATILYEIVKRRKLMGLETWIGFIDFSKAYDLVPHMAL 483
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1XRD3_9FUNG (Transposon TX1 uncharacterized (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XRD3_9FUNG) HSP 1 Score: 160 bits (404), Expect = 5.540e-43 Identity = 87/212 (41.04%), Postives = 122/212 (57.55%), Query Frame = 1
Query: 28 LLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYD 657
L+T+ +EAW H+ LA+D TGNS+S KW + KS + D TW+E+ GAL +K PG DGIP++++KL +E SP K L +V MW + +P S VV IPKKG++ D N+YRGISL+ T KV+ +I+ RL + + + QAGFR +EEC Q L EI + RKI G +++ F+D KAYD
Sbjct: 262 LITDAEAKSEAWAAHFEELAKDNTGNSRSKEKWSKIVNKSVGV--FPDCDAPLTWKEICGALKATPNNKSPGCDGIPSEIWKLVQHEEEPTSPFAKLLSRLVKGMWQAERMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIQTLAKVVSKIIARRLCIIDRKHDILAKEQAGFRSREECVAQATTLYEIVRRRKISGLSTWIGFIDFAKAYD 471 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66528.14251.1 >prot_H-elongata_contig66528.14251.1 ID=prot_H-elongata_contig66528.14251.1|Name=mRNA_H-elongata_contig66528.14251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp SVQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQback to top mRNA from alignment at H-elongata_contig66528:2579..3256+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66528.14251.1 ID=mRNA_H-elongata_contig66528.14251.1|Name=mRNA_H-elongata_contig66528.14251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=678bp|location=Sequence derived from alignment at H-elongata_contig66528:2579..3256+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66528:2579..3256+ >mRNA_H-elongata_contig66528.14251.1 ID=mRNA_H-elongata_contig66528.14251.1|Name=mRNA_H-elongata_contig66528.14251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig66528:2579..3256+ (Himanthalia elongata Himel1 dioecious)back to top |