mRNA_H-elongata_contig6651.14248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6651.14248.1
Unique NamemRNA_H-elongata_contig6651.14248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6651.14248.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.120e-15
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:    9 YATGNLGEPIAWLFLYAQRPHTR*GPTMPESRRLRAAKLAHERGGITKAARVLVPPNAAPRNGITLGILQGKHPREDPAAIA 254
            +A G+L EPIAWL +Y +    R      ++R+ RA +LAHE GGITKAA  L+ P  +PRN  TL  L+  HP EDP  IA
Sbjct:   10 FANGDLSEPIAWLMMYEKNRRLRYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIA 91
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BLAST of mRNA_H-elongata_contig6651.14248.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.180e-14
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:    9 YATGNLGEPIAWLFLYAQRPHTR*GPTMPESRRLRAAKLAHERGGITKAARVLVPPNAAPRNGITLGILQGKHPREDPAAIA 254
            +A G+L EPIAWL +Y +    +      ++R+ RA +LAHE GGITKAA  L+ P  +PRN  TL  L+  HP EDP  IA
Sbjct:   10 FANGDLSEPIAWLMMYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIA 91
[Close]
BLAST of mRNA_H-elongata_contig6651.14248.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.700e-14
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:    9 YATGNLGEPIAWLFLYAQRPHTR*GPTMPESRRLRAAKLAHERGGITKAARVLVPPNAAPRNGITLGILQGKHPREDPAAIA 254
            +A G+L EPIAWL +Y +    +      ++R+ RA +LAHE GGITKAA  L+ P  +PRN  TL  L+  HP EDP  IA
Sbjct:   10 FANGDLSEPIAWLMMYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIA 91
[Close]
BLAST of mRNA_H-elongata_contig6651.14248.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.780e-14
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:    9 YATGNLGEPIAWLFLYAQRPHTR*GPTMPESRRLRAAKLAHERGGITKAARVLVPPNAAPRNGITLGILQGKHPREDPAAIA 254
            +A G+L EPIAWL +Y +    +      ++R+ RA +LAHE GGITKAA  L+ P  +PRN  TL  L+  HP EDP  IA
Sbjct:   10 FANGDLSEPIAWLMMYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIA 91
[Close]
BLAST of mRNA_H-elongata_contig6651.14248.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 69.3 bits (168), Expect = 1.980e-11
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 3 
Query:    9 YATGNLGEPIAWLFLYAQRPHTR*GPTMPESRRLRAAKLAHERGGITKAARVLVPPNAAPRNGITLGILQGKHPREDPAAIAEVKARAEKYVHEPP 296
            +A G+L   +AWL  YA++P          S+  RA  LAH+RGG++KAA  L+ P + PRN  TL  L+ KHP E    IAE    A   +  PP
Sbjct: 1050 FAAGDLEMMLAWLLSYAKQPTRSPRQGEEASKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPP 1145
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6651.14248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LN63_9PHAE8.120e-1548.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE2.180e-1447.56Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE2.700e-1447.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE2.780e-1447.56Reverse transcriptase domain-containing protein (F... [more]
A0A6P0N5L4_9CYAN1.980e-1140.63Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6651contigH-elongata_contig6651:8378..8713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.247417-CDS-H-elongata_contig6651:8377..87131622931054.247417-CDS-H-elongata_contig6651:8377..8713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6651 8378..8713 +
1691679679.1925395-CDS-H-elongata_contig6651:8377..87131691679679.1925395-CDS-H-elongata_contig6651:8377..8713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6651 8378..8713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6651.14248.1prot_H-elongata_contig6651.14248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6651 8378..8713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6651.14248.1

>prot_H-elongata_contig6651.14248.1 ID=prot_H-elongata_contig6651.14248.1|Name=mRNA_H-elongata_contig6651.14248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MTDTLRATWASPSPGYFFTRNGPTQGEDRPCPKADGCERRSWRTSGEGSP
KQHVYSYPPTRPRETESPSAFCKASTPERTPLPSPKSKRGPRSMSTSRRR
RHRPQSPTSTNT
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mRNA from alignment at H-elongata_contig6651:8378..8713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6651.14248.1 ID=mRNA_H-elongata_contig6651.14248.1|Name=mRNA_H-elongata_contig6651.14248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig6651:8378..8713+ (Himanthalia elongata Himel1 dioecious)
ATGACGGATACGCTACGGGCAACCTGGGCGAGCCCATCGCCTGGCTATTT
CTTTACGCGCAACGGCCCCACACAAGGTGAGGACCGACCATGCCCGAAAG
CCGACGGCTGCGAGCGGCGAAGTTGGCGCACGAGCGGGGAGGGATCACCA
AAGCAGCACGTGTACTCGTACCCCCCAACGCGGCCCCGAGAAACGGAATC
ACCCTCGGCATTCTGCAAGGCAAGCACCCCAGAGAGGACCCCGCTGCCAT
CGCCGAAGTCAAAGCGAGGGCCGAGAAGTATGTCCACGAGCCGCCGGAGG
AGACATCGCCCCCAATCGCCGACATCGACCAACACT
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Coding sequence (CDS) from alignment at H-elongata_contig6651:8378..8713+

>mRNA_H-elongata_contig6651.14248.1 ID=mRNA_H-elongata_contig6651.14248.1|Name=mRNA_H-elongata_contig6651.14248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig6651:8378..8713+ (Himanthalia elongata Himel1 dioecious)
ATGACGGATACGCTACGGGCAACCTGGGCGAGCCCATCGCCTGGCTATTT
CTTTACGCGCAACGGCCCCACACAAGGTGAGGACCGACCATGCCCGAAAG
CCGACGGCTGCGAGCGGCGAAGTTGGCGCACGAGCGGGGAGGGATCACCA
AAGCAGCACGTGTACTCGTACCCCCCAACGCGGCCCCGAGAAACGGAATC
ACCCTCGGCATTCTGCAAGGCAAGCACCCCAGAGAGGACCCCGCTGCCAT
CGCCGAAGTCAAAGCGAGGGCCGAGAAGTATGTCCACGAGCCGCCGGAGG
AGACATCGCCCCCAATCGCCGACATCGACCAACACTATGACGGATACGCT
ACGGGCAACCTGGGCGAGCCCATCGCCTGGCTATTTCTTTACGCGCAACG
GCCCCACACAAGGTGAGGACCGACCATGCCCGAAAGCCGACGGCTGCGAG
CGGCGAAGTTGGCGCACGAGCGGGGAGGGATCACCAAAGCAGCACGTGTA
CTCGTACCCCCCAACGCGGCCCCGAGAAACGGAATCACCCTCGGCATTCT
GCAAGGCAAGCACCCCAGAGAGGACCCCGCTGCCATCGCCGAAGTCAAAG
CGAGGGCCGAGAAGTATGTCCACGAGCCGCCGGAGGAGACATCGCCCCCA
ATCGCCGACATCGACCAACACT
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