mRNA_H-elongata_contig66495.14246.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66495.14246.1
Unique NamemRNA_H-elongata_contig66495.14246.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66495.14246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66495contigH-elongata_contig66495:2520..3228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size343
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.0644765-CDS-H-elongata_contig66495:2521..27241622931054.0644765-CDS-H-elongata_contig66495:2521..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66495 2522..2724 -
1691679679.1415703-CDS-H-elongata_contig66495:2521..27241691679679.1415703-CDS-H-elongata_contig66495:2521..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66495 2522..2724 -
1622931054.0843315-CDS-H-elongata_contig66495:3092..32281622931054.0843315-CDS-H-elongata_contig66495:3092..3228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66495 3093..3228 -
1691679679.1515646-CDS-H-elongata_contig66495:3092..32281691679679.1515646-CDS-H-elongata_contig66495:3092..3228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66495 3093..3228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66495.14246.1prot_H-elongata_contig66495.14246.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66495 2522..3228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66495.14246.1

>prot_H-elongata_contig66495.14246.1 ID=prot_H-elongata_contig66495.14246.1|Name=mRNA_H-elongata_contig66495.14246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
IVRQPRLHCHRHCHCLPATRSQSRSHIIISLSQRLRGLDFHPVLKCPDAS
MQHKAVMKTIIIFRSSWVDILLATVILNSLLGATMLTDQSFTDDDNWETL
ASENEIRSFDGTG
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mRNA from alignment at H-elongata_contig66495:2520..3228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66495.14246.1 ID=mRNA_H-elongata_contig66495.14246.1|Name=mRNA_H-elongata_contig66495.14246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at H-elongata_contig66495:2520..3228- (Himanthalia elongata Himel1 dioecious)
ATAGTACGGCAGCCTCGACTTCACTGCCATCGCCATTGCCATTGCCTCCC
AGCGACACGTAGCCAGAGCAGGTCTCACATTATAATAAGCTTATCCCAAC
GTTTACGCGGTCTGGACTTTCACCCGGTCCTAAAATGTGCGGATATTCGA
GAATAGCGAATATAGATTATGGAGGCGAGCGCGTTGAGATTTTTCAGAGA
TTTTCAAGAAATAGATACGTGATGCTGAGCTAGGACCGTGTAACTTCCTT
TGTTGCTCTTCTCCTGCAAACATACCAGCAGCAGCGTGGCTTGTTTTCGC
TGGTCCTTCAAGCGATTAGCGTAGTATTTCTTGCACATACAATGGTGCCA
GCAGCGTGCTTTCTGACTTACTCTGGAAGCGGTAGTGAGTCGCGTAATGG
AACCAACGGTGTATTGACGGAGGGGGTATATCGGCACTGAATGAAACCTC
CTTTTAAGAGCCTCGTCGGCCGTACTTCGCCCACTTGCCTTCTGCCCTGA
ACAGGTCCTGACGCATCCATGCAGCACAAAGCAGTTATGAAGACCATCAT
CATCTTCCGTTCGTCGTGGGTCGATATACTTCTTGCTACAGTCATACTCA
ACAGCCTTTTGGGGGCGACCATGTTGACGGATCAAAGCTTCACAGACGAC
GACAATTGGGAAACGCTAGCCTCAGAGAATGAGATTCGGAGTTTTGATGG
AACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig66495:2520..3228-

>mRNA_H-elongata_contig66495.14246.1 ID=mRNA_H-elongata_contig66495.14246.1|Name=mRNA_H-elongata_contig66495.14246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig66495:2520..3228- (Himanthalia elongata Himel1 dioecious)
ATAGTACGGCAGCCTCGACTTCACTGCCATCGCCATTGCCATTGCCTCCC
AGCGACACGTAGCCAGAGCAGGTCTCACATTATAATAAGCTTATCCCAAC
GTTTACGCGGTCTGGACTTTCACCCGGTCCTAAAATATAGTACGGCAGCC
TCGACTTCACTGCCATCGCCATTGCCATTGCCTCCCAGCGACACGTAGCC
AGAGCAGGTCTCACATTATAATAAGCTTATCCCAACGTTTACGCGGTCTG
GACTTTCACCCGGTCCTAAAATGTCCTGACGCATCCATGCAGCACAAAGC
AGTTATGAAGACCATCATCATCTTCCGTTCGTCGTGGGTCGATATACTTC
TTGCTACAGTCATACTCAACAGCCTTTTGGGGGCGACCATGTTGACGGAT
CAAAGCTTCACAGACGACGACAATTGGGAAACGCTAGCCTCAGAGAATGA
GATTCGGAGTTTTGATGGAACAGGTGTCCTGACGCATCCATGCAGCACAA
AGCAGTTATGAAGACCATCATCATCTTCCGTTCGTCGTGGGTCGATATAC
TTCTTGCTACAGTCATACTCAACAGCCTTTTGGGGGCGACCATGTTGACG
GATCAAAGCTTCACAGACGACGACAATTGGGAAACGCTAGCCTCAGAGAA
TGAGATTCGGAGTTTTGATGGAACAGGT
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