mRNA_H-elongata_contig66478.14245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66478.14245.1
Unique NamemRNA_H-elongata_contig66478.14245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66478.14245.1 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 9.700e-36
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 GCLQVWYVAHHVGHVMKTLRGGRLDELHRRMKRNPHVLDARVCRAVLWWNLLGEAMEVAREVEKRRSNRRENRESVVALAITQRR 255
            G  QVW+ AHHVGHV+KTLR GRLD+LHRRMKRNPHVLDARVCRAV+WW++L EAME A+E E+RR+  RE R  VV LA++QRR
Sbjct:   41 GVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRR 125
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BLAST of mRNA_H-elongata_contig66478.14245.1 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.980e-30
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:   13 VWYVAHHVGHVMKTLRGGRLDELHRRMKRNPHVLDARVCRAVLWWNLLGEAMEVAREVEKRRSNRRENRESVVALAITQRR 255
            VW+ AHHVGHV+KTLR GRLD+LHRRMKRNPHVLDARVCRAV+WW++L EAME A+E         E R  VV LA++QRR
Sbjct:   36 VWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRR 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66478.14245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI9.700e-3671.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE5.980e-3067.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66478contigH-elongata_contig66478:2553..3146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006110.1
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.9795425-CDS-H-elongata_contig66478:2552..27211622931053.9795425-CDS-H-elongata_contig66478:2552..2721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66478 2553..2721 -
1691679679.1220908-CDS-H-elongata_contig66478:2552..27211691679679.1220908-CDS-H-elongata_contig66478:2552..2721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66478 2553..2721 -
1622931054.0005646-CDS-H-elongata_contig66478:3060..31461622931054.0005646-CDS-H-elongata_contig66478:3060..3146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66478 3061..3146 -
1691679679.1321251-CDS-H-elongata_contig66478:3060..31461691679679.1321251-CDS-H-elongata_contig66478:3060..3146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66478 3061..3146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66478.14245.1prot_H-elongata_contig66478.14245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66478 2553..3146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66478.14245.1

>prot_H-elongata_contig66478.14245.1 ID=prot_H-elongata_contig66478.14245.1|Name=mRNA_H-elongata_contig66478.14245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
GCLQVWYVAHHVGHVMKTLRGGRLDELHRRMKRNPHVLDARVCRAVLWWN
LLGEAMEVAREVEKRRSNRRENRESVVALAITQRR
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mRNA from alignment at H-elongata_contig66478:2553..3146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66478.14245.1 ID=mRNA_H-elongata_contig66478.14245.1|Name=mRNA_H-elongata_contig66478.14245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at H-elongata_contig66478:2553..3146- (Himanthalia elongata Himel1 dioecious)
GGATGCCTGCAGGTGTGGTACGTGGCTCACCATGTCGGCCACGTGATGAA
AACGCTACGAGGGGGAAGATTGGACGAGCTGCACAGGTGAGAAGAGGTAG
GGCAAAAGCACGGGGGCTCTCCGGAGGTCGTATCGTCGGTGCGTTCCGGA
GCCTAGCTTCGCCGATCTCCCCCAGACGGGTTAAGGTTCCTCTTTCCGAG
CTCCCGAGAGTCGGATGCGAAATGAGCAGCGCGCAAGATGAAGACGAGAT
GTGATGCTAGAATTTTCTCTTCTTTGTGCCGCGGGTGAACTTAGCTCTAA
CTATGGCCGATTTTTGTGCGCTCGGCTTGATGGCGAGCGCCGAGAGAGAG
AGATAGGTATTGGAAGCTTTCCTTTTAAGGGCATCCCAACGAGACGCGTG
CTATCCCATCCCTTCCCGATAACAGGAGAATGAAACGCAACCCTCACGTT
CTCGACGCGAGGGTTTGCCGGGCGGTTCTGTGGTGGAACTTGCTGGGGGA
AGCGATGGAGGTGGCGCGGGAAGTCGAGAAACGCCGCTCCAATCGACGGG
AAAACCGAGAATCAGTGGTCGCCCTCGCAATAACCCAGCGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig66478:2553..3146-

>mRNA_H-elongata_contig66478.14245.1 ID=mRNA_H-elongata_contig66478.14245.1|Name=mRNA_H-elongata_contig66478.14245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig66478:2553..3146- (Himanthalia elongata Himel1 dioecious)
GGATGCCTGCAGGTGTGGTACGTGGCTCACCATGTCGGCCACGTGATGAA
AACGCTACGAGGGGGAAGATTGGACGAGCTGCACAGGGATGCCTGCAGGT
GTGGTACGTGGCTCACCATGTCGGCCACGTGATGAAAACGCTACGAGGGG
GAAGATTGGACGAGCTGCACAGGAGAATGAAACGCAACCCTCACGTTCTC
GACGCGAGGGTTTGCCGGGCGGTTCTGTGGTGGAACTTGCTGGGGGAAGC
GATGGAGGTGGCGCGGGAAGTCGAGAAACGCCGCTCCAATCGACGGGAAA
ACCGAGAATCAGTGGTCGCCCTCGCAATAACCCAGCGGCGAGAGAATGAA
ACGCAACCCTCACGTTCTCGACGCGAGGGTTTGCCGGGCGGTTCTGTGGT
GGAACTTGCTGGGGGAAGCGATGGAGGTGGCGCGGGAAGTCGAGAAACGC
CGCTCCAATCGACGGGAAAACCGAGAATCAGTGGTCGCCCTCGCAATAAC
CCAGCGGCGA
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